ID:

dsi_7635

 Coordinate:

x:11749219-11749368 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-0.3 0.0

Flybase annnotation

CDS [x_11749198_11749218_+]; five_prime_UTR [x_11748780_11749197_+]; exon [x_11748780_11749218_+]; intron [x_11749219_11765840_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTCACAGCAAAATAAAACTTTTCGTCAAAATGCAGCAGAAAGTCGAAGAGGTTAGTAAATAATCAAATCTTAGTAATAAGTTAATATTATAAGAAAATTGAATAGTGTTTAATAAAATATAAATGAATAAAGAAAGATAAAGAAATAGTTTCAAAATCAGCAAGTGAAGAAAGTTTTACATAATTTCAGAAGCATTAAAAAGACATTAAGTAGGAACTTAAAAGTTCGCAAAAACTAGAGCATTTTATAT
****************************************************************************************........(((((((...)))))))..............................*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
....................TTCGTCAAAATGCAGCAGAAAGTCGAA........................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................CAGCAGAAAGTCGAAGAG........................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATGAATAAAGAAAGATAAAGA........................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................CGTCAAAATGCAGCAGAAAGTCGAAGA......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................CAAAATGCAGCAGAAAGTCGAAG.......................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............AAACTTTTCGTCAAAATGCATCAG.................................................................................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................ATAAGAAAATTGAATAGTGTT............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........AAATAAAACTTTTCGTCAAAATGCAGC...................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................GCAGCAGAAAGTCGAAGAGAA...................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................TGCAGCAGAAAGTCGA............................................................................................................................................................................................................ 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..................TTTTCGTCAAAATGCAGCA..................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................CAGCAGAAAGTCGAAGAGG....................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................GACATTAAGTAGGAACTT............................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........AAAATAAAACTTTTCGTC................................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................TCGTCAAAATGCAGCAGAAAGTCGAAGAG........................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................AATGCAGCAGAAAGTCGAAGAG........................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........AAATAAAACTTTTCGTCAAAAT........................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTAGGAACTTAAAAGTTC....................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTCAAAATCAGCAAGTGAAGAAAGG............................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................AGCAGAAAGTCGAAGAGA....................................................................................................................................................................................................... 18 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AAGAAAAAGAGATAGTTTGAAA............................................................................................... 22 3 10 0.20 2 0 0 0 0 0 0 0 0 2 0 0
............................................................................................................................................................TCAGCAAGTGAAGAAACTG........................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................TAATGAATAATGAAAGATAATG............................................................................................................ 22 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................TTCAGCAAGTGAAGAAACTG........................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0
...................................CAGAGAGTCGGAAAGGTTA.................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 1 0
......................................AAATTCGAAGAGGGTAG................................................................................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.................................AGCAGAAAGTCGTAG.......................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CAGTGTCGTTTTATTTTGAAAAGCAGTTTTACGTCGTCTTTCAGCTTCTCCAATCATTTATTAGTTTAGAATCATTATTCAATTATAATATTCTTTTAACTTATCACAAATTATTTTATATTTACTTATTTCTTTCTATTTCTTTATCAAAGTTTTAGTCGTTCACTTCTTTCAAAATGTATTAAAGTCTTCGTAATTTTTCTGTAATTCATCCTTGAATTTTCAAGCGTTTTTGATCTCGTAAAATATA
***********************************************************************************************************........(((((((...)))))))..............................**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body
............................................................................................................................CGTATATCTTTCTATTGCTTTAT....................................................................................................... 23 3 1 1.00 1 0 1 0 0
.................................TCGTCTTTCAGCTTCTCCA...................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................................................GTTATTGATCTCGTAAACTGT. 21 3 2 0.50 1 0 0 1 0
............................................................................................................................CTTATTTCTATCTATTGGTTT......................................................................................................... 21 3 11 0.09 1 0 1 0 0
..................................................................................................................................................TCAAAGTTCTAGTCGTTG...................................................................................... 18 2 12 0.08 1 0 0 0 1
...........................................................................................................................................TTCTTTATCAAAGTCT............................................................................................... 16 1 15 0.07 1 1 0 0 0
...........................................................................................................................................TTCTTTATCGAAGTTT............................................................................................... 16 1 16 0.06 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:11749169-11749418 + dsi_7635 GTCA---------CAGC---AAAATAAAA----------CTTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTCGAAGAGGTTAGTAAATAATCAAA---TCTTAGTAATAAGTTAATATTA---------T----------------------------------------------------------------------------------------------------------------------------------AAG-----------------------------------------AAAATTGAATAGTGTTTAATAAAATATAAATGAATAAAGAA----------AGATAAAGAAATAGTTTCAAAATCAGCAAGT--------GAAGAAAGTTTTACATAATTTCAGAAGCATTAAAAAGACATTAAGTAGGAACTTAAAAGTTCG-----------CAAAAACTAGAGCATTTT--------A-------------------------TAT
droSec2 scaffold_21:148106-148355 + GCCA---------CAGC---AAAATAAAA----------CTTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTCGAAGAGGTTAGTAAATAATCAAA---TCTTAGTAATAAGTTAATATTA---------T----------------------------------------------------------------------------------------------------------------------------------AAG-----------------------------------------AAAATTGAATAGTGTTTAATAAAATATAAATGAATAAAGAA----------AGATAAAGAAATAGTTTCAAAATCACCAAGT--------GAAGAAAGTTTTACATAATTTTAGAAGCATTAAAAAGACATTAAGTAGGAACTTAAAAATTCG-----------CAAAAACTAGAGCATTTT--------A-------------------------TAT
dm3 chrX:12391577-12391826 + GCCA---------CAGC---AAACTAAAA----------CTTT--TC-----------------------------------------------------------------------------ATCAAAATGCAGCAGAAAGTCGAAGAGGTTAGTAAATAATAAAA---ACATAATAATAAGTTAATAATA---------TCTAAGATCTTGGTG---------------------------------TATATGAAATCAAGACAGACTGTTGAA---------------------AATACATG--------------------------------------------------------------------CTATGTTT-----------------------------------GTTTGTT------------------------CTTCACCAAAT--------GAAGAAAGTTTTAGGTAATTTCAGAAGCATTAAAAAGACATTAAGTAGGAACCTAAAAGTAAG-----------CAAAAACTAGTGCATTTT--------A-------------------------TAT
droEre2 scaffold_4690:14467162-14467530 - GCCA---------CAGC---AAAGTAAAA----------AGTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTTGAAGAGGTTAGTAAATATTTCAT---TCTTACTAGTAGGTTAATGTCAACAA-TTAC----------------ATATT---TGATTCTAACTTGCCAATATGTTGTAT---AAATCAAGACGTACTCTTAAA---------------------AATACATGTGTTAAAAACTAGAAGTCTGGCAGAGAATG-----------------------------------------AAATCAGGATAATGTTTAATTAAATATGATCAAATTTCGGGTCTGCTTTCATACAAATGAAATATTTCCAGGATATGCTGATCCAGAAACCAAGAAACTACA--ATACATTCAGAAGCATTAAGTAGACTTTTA---GGTGACTAAAAGTGAGTTCTATATTTTTTAAAATTAGAGCAGTTT--------A-------------------------TAT
droYak3 X:6666856-6667109 + AAAA---------CAGC---AAAGTAAAA----------CTAC--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTTGAAGAGGTAAGTAAACATATAAA---TCTTAGCAGTAAGCTAATAT---------------------------ATATTTTTTGATTCTAACTTGGCT------------------------AAAAAGAT---AATACTATTTTTTATTTATTGAATAAATATGTTCAAACCTAGAACTCTAGCAG------------------------------------------------------------------------------------AGAA----------TGCAAATGAAAT-----------------------------AGAAACTATAAGATAATTTCAGATGCATTAATTCGAGTTTCA---GGCGACTAAGAGTATG-------------------------TTCT--------A-------------------------AAT
droEug1 scf7180000409110:768450-768527 + GTCA---------ACGC---AAAAAGAAA----------CTTT--TA-----------------------------------------------------------------------------AGCAAAATGCAGCAGAAAGTTGAAGAGGTTAGTAAATGTTTATG---GATAAATAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302075:1181104-1181160 + GCGA---------ACGC---AATATAAAC-----------TTTTACA-----------------------------------------------------------------------------AACAAAATGCAGCAGAAAGTTGAAGAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415659:152689-152808 - AAAG---------AGAA---AGGATTCAAACTTCAAAATTAAT--TTTTTAAAATACAATACGTAATTGATAAGAAAATATAGAACTTAGAACTTCGCTCGAATTAAAAACTAAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTT--------A-------------------------TTT
droEle1 scf7180000490546:415476-415691 + GCCA---------ACGC---AAAATAA-A----------CTTT--TG-----------------------------------------------------------------------------ATCAAAATGCAGCAGAAAGTTGAAGAGGTTAGTAAATTCTACTA---CC-----------------AAAACTAT----TTTAAAATCTCAGTGA---------------------------------ATA---------------------------------------------------------------------ATTGCAGATATTCAAAATGAATATATATTAAAATTTGAAATGATATCCAAATTCTTATTTA-----------------------------------TTGTACC-----------------------------------------------------------------------TCATAAGACATTAAGAATAAAATAATTAATCTG-----------TCAT--ATTGAATATTTA--------T-------------------------TAA
droRho1 scf7180000777786:3931-4080 + GCAA---------CCGC---AAAACAA-A----------TTTT--TA-----------------------------------------------------------------------------AACAAAATGCAGCAAAAAGTTGAAGAGGTTAGTAAATGTACTTAAAT---AAAGTCTACC---ATTTAAAGTGT----TTTAAATGCATTGTAA---------------------------------CTA---------------------------------------------------------------------GTTGCATA-----------------------------------------------------------------------------------------TGTACA-----------------------------------------------------------------------TCAGAAAAG--------------AA----------------------------------------------------------TAAATATAATTTTAAA
droFic1 scf7180000453882:124602-124747 + GCAA---------CCGC---AAAATAA-A----------CTTT--TA-----------------------------------------------------------------------------AACAAAATGCAACAAAAAGTTGAAGAGGTGAGTCTACGTGATTGGAT---AAGTGTTATT---TCTTTAAATGT----TCTAACATTTTGGTAA---------------------------------ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGATATATAAAAAAATAAGTAAATATAAGTAAATA
droKik1 scf7180000302696:10116-10174 + GTCG---------CCAC---AGATAAAAA-------G--GATT--CA-----------------------------------------------------------------------------CGGAAAATGCAGCAGAAAGTAGAAGAGGTAAGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12929:2610616-2610668 - CAGA-------AGCACT---AATTCAAAA---------ACTAT--AA-----------------------------------------------------------------------------ACAAAAATGCAGCAGAAAGTTGAAGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395540:19679-19822 - AAAATTAAGGAAGCACTAATAAAATAAGA------AAAATTAA--CC-----------------------------------------------------------------------------AACAAAATGCAGCAGAAAGTTGAAGAGGTGAGTGAAGAAACTTG---A-------------TAATCTAAAAAA-TTAT----------------ATATT---TCA--------------------------------------------A---AACAATATTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAA--------------------ATTTTCAAAAATCT--------A-------------------------TAT
dp5 XL_group1a:3133358-3133422 + GTGA---------CACC---AACGAGACA----------CT-----------------------------------------------------------------------CGATCAACTTTGACCAAAATGCAGCAAAAGGTTGAAGAGGTTAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_12:144722-144795 - GCTTG--------CAGC---G---TGA----------------------------------------------------------------------CACCAACGAGACACTTAATCAACTTTGACCAAAATGCAGCAAAAGGTTGAAGAGGTTAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004590:4181342-4181454 + AACC----------------AAAAGAA-A----------CTT-----------------------------------------------------------------------------------CAAATATGCAGCAAAAGGTTGAAGAGGTTAGTATCAACACTAAGGG---AAATACTGTGTGAAACT---------------------------ATATTTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA--------------------TTGTTACTAAGA--AATGACAAA-------------------------TAA
droVir3 scaffold_12928:921620-921754 + GCAA---------TAAA---CAAC-AA----------------------------------------------------------------------CAGCAACAA-ATACACAAACAACTAC-GACAAAATGCAGCAAAAGGCCGATGAGGTGAGTGCAAA-CCAAG---C---------------------------------------------------------------------C------------------------AAATAGAT---TA-------------------AAT----------------------------------------------------------------------------------------------------------------------------------AAATAATGCAAATCTAA--------------------------------------------------------------------------AAA--------------------GTGCTGAAAAAAAA--------A-------------------------AAA
droMoj3 scaffold_6328:1901049-1901156 + GCGA---------AAAC---CGAATAAAA----------AAAA--TA-----------------------------------------------------------------------------CACAAAATGCAGCAAAAAGCCGATGAGGTGAGTAGCAAAATAGG---AAATAGAAC-AAAATAATAGCA---------T----------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------------ACGATCGCAGCATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTCA---------CAGC---AAAATAAAA----------CTTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTCGAAGAGGTTAGTAAATAATCAAA---TCTTAGTAATAAGTTAATATTA---------T----------------------------------------------------------------------------------------------------------------------------------AAG-----------------------------------------AAAATTGAATAGTGTTTAATAAAATATAAATGAATAAAGAA----------AGATAAAGAAATAGTTTCAAAATCAGCAAGT--------GAAGAAAGTTTTACATAATTTCAGAAGCATTAAAAAGACATTAAGTAGGAACTTAAAAGTTCG-----------CAAAAACTAGAGCATTTT--------A-------------------------TATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................T--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTCGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.....................................................................................................................................CAGCAGAAAGTCGAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAAAGAA----------AGATAAAGA...............................................................................................................................................................2111.00100010000000000000
..............................................C-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTCGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
..............................................................................................................................CAAAATGCAGCAGAAAGTCGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
................................................................................................................................................................................................A---------T----------------------------------------------------------------------------------------------------------------------------------AAG-----------------------------------------AAAATTGAATAGTGTT...........................................................................................................................................................................................................2111.00100000000001000000
.....................AAATAAAA----------CTTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
....................................................................................................................................GCAGCAGAAAGTCGAAGAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...................................................................................................................................TGCAGCAGAAAGTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
........................................TTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
.....................................................................................................................................CAGCAGAAAGTCGAAGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAAGTAGGAACTT...........................................................................1811.00101000000000000000
....................AAAATAAAA----------CTTT--TC-----------------------------------------------------------------------------GTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.............................................TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTCGAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
.................................................................................................................................AATGCAGCAGAAAGTCGAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.....................AAATAAAA----------CTTT--TC-----------------------------------------------------------------------------GTCAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGAACTTAAAAGTTC...................................................................1811.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAAATCAGCAAGT--------GAAGAAAGG........................................................................................................................2511.00100100000000000000
......................................................................................................................................AGCAGAAAGTCGAAGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.25101000000000000000
droSec2
GCCA---------CAGC---AAAATAAAA----------CTTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTCGAAGAGGTTAGTAAATAATCAAA---TCTTAGTAATAAGTTAATATTA---------T----------------------------------------------------------------------------------------------------------------------------------AAG-----------------------------------------AAAATTGAATAGTGTTTAATAAAATATAAATGAATAAAGAA----------AGATAAAGAAATAGTTTCAAAATCACCAAGT--------GAAGAAAGTTTTACATAATTTTAGAAGCATTAAAAAGACATTAAGTAGGAACTTAAAAATTCG-----------CAAAAACTAGAGCATTTT--------A-------------------------TATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................AAAATGCAGCAGAAAGTCGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0021100
..............................................................................................................................CAAAATGCAGCAGAAAGTCGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.........................................TT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
........................TAAAA----------CTTT--TC-----------------------------------------------------------------------------GTCAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
............................................................................................................................GTCAAAATGCAGCAGAAAGTCGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
...............................................................................................................................AAAATGCAGCAGAAAGTCGAAGAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
..................................................................................................................................ATGCAGCAGAAAGTCGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
................................................................................................................................AAATGCAGCAGAAAGTCGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...................................................................................................................................TGCAGCAGAAAGTCGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
...............................................................................................................................AAAATGCAGCAGAAAGTCGAAGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.............CAGC---AAAATAAAA----------CTTT--TC-----------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.......................ATAAAA----------CTTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.........................................TT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..................................................................................................................................ATGCAGCAGAAAGTCGAAGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.......................................CTTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
...............................................................................................................................AAAATGCAGCAGAAAGTCGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.......................ATAAAA----------CTTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
.......................ATAAAA----------CTTT--TC-----------------------------------------------------------------------------GTCAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
dm3
GCCA---------CAGC---AAACTAAAA----------CTTT--TC-----------------------------------------------------------------------------ATCAAAATGCAGCAGAAAGTCGAAGAGGTTAGTAAATAATAAAA---ACATAATAATAAGTTAATAATA---------TCTAAGATCTTGGTG---------------------------------TATATGAAATCAAGACAGACTGTTGAA---------------------AATACATG--------------------------------------------------------------------CTATGTTT-----------------------------------GTTTGTT------------------------CTTCACCAAAT--------GAAGAAAGTTTTAGGTAATTTCAGAAGCATTAAAAAGACATTAAGTAGGAACCTAAAAGTAAG-----------CAAAAACTAGTGCATTTT--------A-------------------------TATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................AAATGCAGCAGAAAGTCGAAGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000011000000
..................................................................................................................................ATGCAGCAGAAAGTCGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000
...........................................................................................................................................................................................................................................................................................................ATACATG--------------------------------------------------------------------CTATGTTT-----------------------------------GTTTGT.............................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
.............................................................................................................................TCAAAATGCAGCAGAAAGTCGAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATCAAAATGCAGCAGAAAGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CTTT--TC-----------------------------------------------------------------------------ATCAAAATGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................AATGCAGCAGAAAGTCGAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATGCAGCAGAAAGTCGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................C-----------------------------------------------------------------------------ATCAAAATGCAGCAGAAAGTCGAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................AATGCAGCAGAAAGTCGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAAT--------GAAGAAAGTT.......................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATCAAAATGCAGCAGAAAGTCGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..................................................................................................................................ATGCAGCAGAAAGTCGAAGAGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................A----------CTTT--TC-----------------------------------------------------------------------------ATCAAAATGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................AAAATGCAGCAGAAAGTCGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................ATA---------TCTAAGATCTTGGTG---------------------------------TATATG....................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................CAAAATGCAGCAGAAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................AGTTAATAATA---------TCTAAGATCT................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................TGCAGCAGAAAGTCGAAGAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GCAGAAAGTCGAAGAGGTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................GTAAATAATAAAA---ACATAA...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTAAG-----------CAAAAACTA..............................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------GAAGAAAGTTTTAGGAG................................................................................................................18110.4550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000
........................TAAAA----------CTTT--TC-----------------------------------------------------------------------------ATCAAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
droEre2
GCCA---------CAGC---AAAGTAAAA----------AGTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTTGAAGAGGTTAGTAAATATTTCAT---TCTTACTAGTAGGTTAATGTCAACAA-TTAC----------------ATATT---TGATTCTAACTTGCCAATATGTTGTAT---AAATCAAGACGTACTCTTAAA---------------------AATACATGTGTTAAAAACTAGAAGTCTGGCAGAGAATG-----------------------------------------AAATCAGGATAATGTTTAATTAAATATGATCAAATTTCGGGTCTGCTTTCATACAAATGAAATATTTCCAGGATATGCTGATCCAGAAACCAAGAAACTACA--ATACATTCAGAAGCATTAAGTAGACTTTTA---GGTGACTAAAAGTGAGTTCTATATTTTTTAAAATTAGAGCAGTTT--------A-------------------------TATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
GCCA---------CAGC---AAAGTAAAA----------AGTT--TC-----------------------------------------------------------------------------GT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
........................................GTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
........................................GTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...................................................................................................................................................................TTCAT---TCTTACTAGTAGGTTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000
.......................................................................................................................................................................T---TCTTACTAGTAGGTTAATGTC....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.......................................AGTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.................................................................................................................................AATGCAGCAGAAAGTTGAAGAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
..............................................C-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...........................................................................................................................................................................................................................................................................................................................CTAGAAGTCTGGCAGAGAAT.....................................................................................................................................................................................................................................................................2011.0010000100
.........................................TT--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
..............................................C-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
.........................AAAA----------AGTT--TC-----------------------------------------------------------------------------GTCAAAATGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
droYak3
AAAA---------CAGC---AAAGTAAAA----------CTAC--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTTGAAGAGGTAAGTAAACATATAAA---TCTTAGCAGTAAGCTAATAT---------------------------ATATTTTTTGATTCTAACTTGGCT------------------------AAAAAGAT---AATACTATTTTTTATTTATTGAATAAATATGTTCAAACCTAGAACTCTAGCAG------------------------------------------------------------------------------------AGAA----------TGCAAATGAAAT-----------------------------AGAAACTATAAGATAATTTCAGATGCATTAATTCGAGTTTCA---GGCGACTAAGAGTATG-------------------------TTCT--------A-------------------------AATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................ATGCAGCAGAAAGTTGAAGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA---GGCGACTAAGAGTATG-------------------------TT.......................................2212.00201000010000
...................................................................................................................................................................ATAAA---TCTTAGCAGTAAGCTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCAGATGCATTAATTCGAGT.........................................................................................2411.00100000010000
..................................................................................................................................ATGCAGCAGAAAGTTGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.......................................CTAC--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.................................................................................................................................AATGCAGCAGAAAGTTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.......................GTAAAA----------CTAC--TC-----------------------------------------------------------------------------GTCAAAATGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.........................................AC--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGAAAGTTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
..................................................................................................................................ATGCAGCAGAAAGTTGAAGAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
................................................................................................................................AAATGCAGCAGAAAGTTGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA---GGCGACTAAGAGTAT...................................................................1911.00100000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCA---GGCGACTAAGAGT.....................................................................1911.00100000010000
.........................................................................................................................................................................................................................................................................................................................ACCTAGAACTCTAGCAG------------------------------------------------------------------------------------A.....................................................................................................................................................................................1811.00101000000000
......................................................................................................................................AGCAGAAAGTTGAAGAGGTAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...............................................................................................................................................................................................................................................................................................................ATATGTTCAAACCTAGAACT.................................................................................................................................................................................................................................................................................2011.00110000000000
...................................................................................................................................................................................................................................................................................................................................CTAGCAG------------------------------------------------------------------------------------AGAA----------TGCAAATG................................................................................................................................................................1911.00101000000000
.......................................CTAC--TC-----------------------------------------------------------------------------GTCAAAATGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..................................................................................................................................................................................................................................................................................................ATTTATTGAATAAATATGTTCAAACCTA......................................................................................................................................................................................................................................................................................2811.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTTTCA---GGCGACTAAGAGTATG-------------------------TT.......................................2711.00100000010000
.......................GTAAAA----------CTAC--TC-----------------------------------------------------------------------------GTCAAAATGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.......................GTAAAA----------CTAC--TC-----------------------------------------------------------------------------GTCAAAATGCAGCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
......................................................................................................................................AGCAGAAAGTTGAAGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.33100000010000
droEug1
GTCA---------ACGC---AAAAAGAAA----------CTTT--TA-----------------------------------------------------------------------------AGCAAAATGCAGCAGAAAGTTGAAGAGGTTAGTAAATGTTTATG---GATAAATAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCGA---------ACGC---AATATAAAC-----------TTTTACA-----------------------------------------------------------------------------AACAAAATGCAGCAGAAAGTTGAAGAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAAG---------AGAA---AGGATTCAAACTTCAAAATTAAT--TTTTTAAAATACAATACGTAATTGATAAGAAAATATAGAACTTAGAACTTCGCTCGAATTAAAAACTAAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTT--------A-------------------------TTTSizeHit CountTotal NormTotal
No Reads
droEle1
GCCA---------ACGC---AAAATAA-A----------CTTT--TG-----------------------------------------------------------------------------ATCAAAATGCAGCAGAAAGTTGAAGAGGTTAGTAAATTCTACTA---CC-----------------AAAACTAT----TTTAAAATCTCAGTGA---------------------------------ATA---------------------------------------------------------------------ATTGCAGATATTCAAAATGAATATATATTAAAATTTGAAATGATATCCAAATTCTTATTTA-----------------------------------TTGTACC-----------------------------------------------------------------------TCATAAGACATTAAGAATAAAATAATTAATCTG-----------TCAT--ATTGAATATTTA--------T-------------------------TAASizeHit CountTotal NormTotal
No Reads
droRho1
GCAA---------CCGC---AAAACAA-A----------TTTT--TA-----------------------------------------------------------------------------AACAAAATGCAGCAAAAAGTTGAAGAGGTTAGTAAATGTACTTAAAT---AAAGTCTACC---ATTTAAAGTGT----TTTAAATGCATTGTAA---------------------------------CTA---------------------------------------------------------------------GTTGCATA-----------------------------------------------------------------------------------------TGTACA-----------------------------------------------------------------------TCAGAAAAG--------------AA----------------------------------------------------------TAAATATAATTTTAAASizeHit CountTotal NormTotal
No Reads
droFic1
GCAA---------CCGC---AAAATAA-A----------CTTT--TA-----------------------------------------------------------------------------AACAAAATGCAACAAAAAGTTGAAGAGGTGAGTCTACGTGATTGGAT---AAGTGTTATT---TCTTTAAATGT----TCTAACATTTTGGTAA---------------------------------ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGATATATAAAAAAATAAGTAAATATAAGTAAATASizeHit CountTotal NormTotal
No Reads
droKik1
GTCG---------CCAC---AGATAAAAA-------G--GATT--CA-----------------------------------------------------------------------------CGGAAAATGCAGCAGAAAGTAGAAGAGGTAAGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CAGA-------AGCACT---AATTCAAAA---------ACTAT--AA-----------------------------------------------------------------------------ACAAAAATGCAGCAGAAAGTTGAAGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................A-----------------------------------------------------------------------------ACAAAAATGCAGCAGAAAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
......................................ACTAT--AA-----------------------------------------------------------------------------ACAAAAATGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.............................................................................................................................CAAAAATGCAGCAGAAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
..GA-------AGCACT---AATTCAAAA---------ACTAT--AA-----------------------------------------------------------------------------AC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.......................................CTAT--AA-----------------------------------------------------------------------------ACAAAAATGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
AAAATTAAGGAAGCACTAATAAAATAAGA------AAAATTAA--CC-----------------------------------------------------------------------------AACAAAATGCAGCAGAAAGTTGAAGAGGTGAGTGAAGAAACTTG---A-------------TAATCTAAAAAA-TTAT----------------ATATT---TCA--------------------------------------------A---AACAATATTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAA--------------------ATTTTCAAAAATCT--------A-------------------------TATSizeHit CountTotal NormTotal
No Reads
dp5
GTGA---------CACC---AACGAGACA----------CT-----------------------------------------------------------------------CGATCAACTTTGACCAAAATGCAGCAAAAGGTTGAAGAGGTTAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................GATCAACTTTGACCAAAATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020110000000
................................................................................................................................AAATGCAGCAAAAGGTTGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
......................CGAGACA----------CT-----------------------------------------------------------------------CGATCAACTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................AGACA----------CT-----------------------------------------------------------------------CGATCAACTTTGACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................................................................................................................CAAAATGCAGCAAAAGGTTGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
.............CACC---AACGAGACA----------CT-----------------------------------------------------------------------CGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................CGATCAACTTTGACCAAAATGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.................................................................................................................GATCAACTTTGACCAAAATGCAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
.........................GACA----------CT-----------------------------------------------------------------------CGATCAACTTTGACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................ACTTTGACCAAAATGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.................................................................................................................GATCAACTTTGACCAAAATGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.TGA---------CACC---AACGAGACA----------CT-----------------------------------------------------------------------CG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................GACCAAAATGCAGCAAAAGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................TGACCAAAATGCAGCAAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
GTGA---------CACC---AACGAGACA----------CT-----------------------------------------------------------------------CGATCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
....................................................................................................................CAACTTTGACCAAAATGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................CAACTTTGACCAAAATGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
GCTTG--------CAGC---G---TGA----------------------------------------------------------------------CACCAACGAGACACTTAATCAACTTTGACCAAAATGCAGCAAAAGGTTGAAGAGGTTAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................CAACTTTGACCAAAATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
............................................................................................................CACTTAATCAACTTTGACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
..............................................................................................................CTTAATCAACTTTGACCAAAATGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.CTTG--------CAGC---G---TGA----------------------------------------------------------------------CACCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
....................................................................................................................CAACTTTGACCAAAATGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................AATCAACTTTGACCAAAATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.........................................................................................................AGACACTTAATCAACTTTGACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droWil2
AACC----------------AAAAGAA-A----------CTT-----------------------------------------------------------------------------------CAAATATGCAGCAAAAGGTTGAAGAGGTTAGTATCAACACTAAGGG---AAATACTGTGTGAAACT---------------------------ATATTTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA--------------------TTGTTACTAAGA--AATGACAAA-------------------------TAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................A-A----------CTT-----------------------------------------------------------------------------------CAAATATGCAGCAAAAGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00201010
..........................A-A----------CTT-----------------------------------------------------------------------------------CAAATATGCAGCAAAAGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00201010
..................................................................................................................................ATGCAGCAAAAGGTTGAAGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
...................................................................................................................................................................ACTAAGGG---AAATACTGTGTGAAACT---------------------------..........................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
....................................................................................................................................................................CTAAGGG---AAATACTGTGTGAAACT---------------------------..........................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
...............................................................................................................................AATATGCAGCAAAAGGTTGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..............................................................................................................................AAATATGCAGCAAAAGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.......................................................................................................................................GCAAAAGGTTGAAGAGGTTAGTATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
........................................TT-----------------------------------------------------------------------------------CAAATATGCAGCAAAAGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
............................A----------CTT-----------------------------------------------------------------------------------CAAATATGCAGCAAAAGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
...................................................................................................................................TGCAGCAAAAGGTTGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.............................................................................................................................................................ATCAACACTAAGGG---AAATACTGTGTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
......................................................................................................................................AGCAAAAGGTTGAAGAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................19150.07100100
droVir3
GCAA---------TAAA---CAAC-AA----------------------------------------------------------------------CAGCAACAA-ATACACAAACAACTAC-GACAAAATGCAGCAAAAGGCCGATGAGGTGAGTGCAAA-CCAAG---C---------------------------------------------------------------------C------------------------AAATAGAT---TA-------------------AAT----------------------------------------------------------------------------------------------------------------------------------AAATAATGCAAATCTAA--------------------------------------------------------------------------AAA--------------------GTGCTGAAAAAAAA--------A-------------------------AAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................ATACACAAACAACTAC-GACAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002002000000000000000000000000000000000000000000000000000000000000
...........................................................................................................ATACACAAACAACTAC-GACAAAATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................AA-ATACACAAACAACTAC-GACAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................AA-ATACACAAACAACTAC-GACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................ACAACTAC-GACAAAATGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................AC-GACAAAATGCAGCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................ACACAAACAACTAC-GACAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ACAAACAACTAC-GACAAAATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTAA--------------------------------------------------------------------------AAA--------------------GTGCTGAG...........................................1820.501000000000000000000010000000000000000000000000000000000000000000
..AA---------TAAA---CAAC-AA----------------------------------------------------------------------CAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331001000000000000000000000000000000000000000000000000000000000000
...............AA---CAAC-AA----------------------------------------------------------------------CAGCAACAA-AT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000001000000000000000000000000000000000000000000000
droMoj3
GCGA---------AAAC---CGAATAAAA----------AAAA--TA-----------------------------------------------------------------------------CACAAAATGCAGCAAAAAGCCGATGAGGTGAGTAGCAAAATAGG---AAATAGAAC-AAAATAATAGCA---------T----------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------------ACGATCGCAGCATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................A-----------------------------------------------------------------------------CACAAAATGCAGCAAAAAGCCGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.................................................................................................................................AATGCAGCAAAAAGCCGATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000

Generated: 05/18/2015 at 12:06 PM