ID:

dsi_763

 Coordinate:

3l:11647443-11647592 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.2 -38.1 -38.1

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_763  3l:11647491-11647508 +
  2. 3l:11647809-11647826 +
  3. 3l:11648127-11648144 +
  4. node_47988:90-107 -
star

Sense Strand Reads

GTGCGCCGACGGAGCTTACTTCAATGTCACCTTGGAATCTTGTGTACCAGACGACGAGGGAATATGCGTCAATTGTAACGAGGGATCTACAAAACCCTTGGCCGACTGTACCATGTATGAGATCTGTTCCGGCGGCAAGTATGTGACCAAGTCCTGCGACAGTGGTTACTACTGGAACAACCAGACAGAGGTCTGCGAAGTGGATGAAGGTCAGTGCAACGGAAATGGAACGACGTGCACTGATGGCGAA
**************************************************...........(((((.((((.(((...((((((..........))))))..))).)).)))))))........((((((.......((((.(((((((.(((....)))..)))))))))))))))))..(((((....))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
......................................................................................................................................................................................ACACAGGGCTCTGCGAAGT................................................. 19 3 16 2.00 32 11 1 5 6 6 1 0 2
........................................................................................................................................................................................ACAGGGCTCTGCGAAGT................................................. 17 2 12 1.08 13 7 0 3 0 0 3 0 0
...........................CACCTTGGAAGCTTGT............................................................................................................................................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0 0 0
..................................................................................................TGGCCGACTGTACCATGT...................................................................................................................................... 18 0 4 0.25 1 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................CGAATTGGATGAAGG........................................ 15 1 9 0.11 1 0 1 0 0 0 0 0 0
...........................CACCTTGGAAACTTGTTT............................................................................................................................................................................................................. 18 2 14 0.07 1 0 1 0 0 0 0 0 0
..............................CTTGGAATCTTGTTT............................................................................................................................................................................................................. 15 1 20 0.05 1 0 1 0 0 0 0 0 0
..............................................................................................CCCGTGGCCGACTGCGCCA......................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

CACGCGGCTGCCTCGAATGAAGTTACAGTGGAACCTTAGAACACATGGTCTGCTGCTCCCTTATACGCAGTTAACATTGCTCCCTAGATGTTTTGGGAACCGGCTGACATGGTACATACTCTAGACAAGGCCGCCGTTCATACACTGGTTCAGGACGCTGTCACCAATGATGACCTTGTTGGTCTGTCTCCAGACGCTTCACCTACTTCCAGTCACGTTGCCTTTACCTTGCTGCACGTGACTACCGCTT
**************************************************...........(((((.((((.(((...((((((..........))))))..))).)).)))))))........((((((.......((((.(((((((.(((....)))..)))))))))))))))))..(((((....))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 SRR553488
RT_0-2 hours eggs
.....................................................................................................................................................TCGGGCCGCTGTAACCAATG................................................................................. 20 3 7 0.29 2 0 2 0 0 0 0
.............................................................................................................................CAAGGCCGCCGTTCATACA.......................................................................................................... 19 0 4 0.25 1 1 0 0 0 0 0
................................................................................................................................................CTGGTTTAGGACGCT........................................................................................... 15 1 12 0.08 1 0 0 1 0 0 0
...............................................................................................................GCACATACTCTAGCCA........................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1
.........GTCTCGAATGAACTTACAGA............................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 1 0
................................................TCTGATGCTGCCATATAC........................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 1 0 0
.....................................................................................................................................................................................................................CACATTGCCTTTACCTTAG.................. 19 3 20 0.05 1 1 0 0 0 0 0

Generated: 04/24/2015 at 10:35 AM