ID:

dsi_7629

 Coordinate:

2l:16955327-16955624 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.6 -3.1 -2.9

Flybase annnotation

Antisense to intron [2l_16955210_16955283_-]; Antisense to CDS [2l_16955284_16955336_-]; Antisense to five_prime_UTR [2l_16955337_16955400_-]; Antisense to exon [2l_16955284_16955400_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+

Sense Strand Reads

TACTCACTTTTTCTCGCCTTCATACAGCAGAAATGACTCAAAGGTCGGTGGTGCGTTCATTTTGATGTCTTACTTTTCGTTAGTTACTGCAAACTATATAAATTGTTTATTAAAATCAACAGCACGCTCAGCAAAATTCTCCGGTACAGTGTTGAACAACGTGCAAGTGCAAGAAACGCTAAACTAGCTATATATAGCTAAAAGTAGCTAGAACGCCCCGCTAATATATTTTATTATTTTATAAATCATTTCGAATATAAGCATCTAAGTAAAATAAAACTTTTGCTTTGAATTTAAAATTGAAAATAATTAAATTTAATTATGTTTTTTTGGCCATTAAATAAATAGCTCAATCCTTCTTGCAACCAACACTGCCAGCCGATAGCTATCGCATAGAC
**************************************************.((((......((((((..........))))))....))))...............**************************************************************************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 SRR902008
ovaries
....................................CTCAAAGGTCGGTGGTGCGTT..................................................................................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.....................................TCAAAGGTCGGTGGTGCGTTT.................................................................................................................................................................................................................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0
...................................ACTCAAAGGTCGGTGGTGTAT...................................................................................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................TTACTTTTCGTTAGTTACTGT.................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................ACTGCAAACTATATAAATTGT.................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................AATGACTCAAAGGTCG............................................................................................................................................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................TACTTTTCGTTAGTTACTGC.................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................GTGCGTTCATTTTGATGTCTT....................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................ACTCAAAGGTCGGTGGTGCGT...................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................CTCAAAGGTCGGTGGTGTTT...................................................................................................................................................................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................AATCAACAGCACGCTCAGCAA........................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................TATTAAAATCAACAGCAC................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................CAGAAATGACTCAAGGGTCGG.............................................................................................................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................TATTAAAATCAACAGCACGC............................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................AAATCAACAGCACGCTCAGCAAA....................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................ACTCAAAGGTCGGTGGTGTTT...................................................................................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................TTCGTTAGTTACTGCAAACTA.............................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................AAATTCTCCGGTACAGTGTTG.................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................CAAAGGTCGGTGGTGCGTTT.................................................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................TTACTTTTCGTTAGTTACTGC.................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................AAAGGTTGGTGGTTCGTCCA................................................................................................................................................................................................................................................................................................................................................... 20 3 6 0.50 3 0 0 1 0 0 1 1 0
................................................................................................................................................................................................................................................................................................................................................................ATCCTTCTCGCAACCA.............................. 16 1 2 0.50 1 0 0 0 1 0 0 0 0
....................................CTCTAAGGTCGTTGGTTCG....................................................................................................................................................................................................................................................................................................................................................... 19 3 16 0.19 3 0 0 0 0 3 0 0 0
..........................................................................................................................................................................................................AGTATCTAGAACGGCACGC................................................................................................................................................................................. 19 3 7 0.14 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................GCTATTTATAGCTAAA.................................................................................................................................................................................................... 16 1 11 0.09 1 0 0 1 0 0 0 0 0
..............................................GGTGGTTCGTTAAGTTTGA............................................................................................................................................................................................................................................................................................................................................. 19 3 12 0.08 1 0 0 0 0 1 0 0 0
......................................CAAAGGTCGGCGGTTCG....................................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................AAGTTTTGCTTTGAA.......................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0
..............................................................................................................................................GGTACAGTGGTTAACAA............................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1
.................................TGACTCAAACGTCGCT............................................................................................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

-------#####################################################################################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATGAGTGAAAAAGAGCGGAAGTATGTCGTCTTTACTGAGTTTCCAGCCACCACGCAAGTAAAACTACAGAATGAAAAGCAATCAATGACGTTTGATATATTTAACAAATAATTTTAGTTGTCGTGCGAGTCGTTTTAAGAGGCCATGTCACAACTTGTTGCACGTTCACGTTCTTTGCGATTTGATCGATATATATCGATTTTCATCGATCTTGCGGGGCGATTATATAAAATAATAAAATATTTAGTAAAGCTTATATTCGTAGATTCATTTTATTTTGAAAACGAAACTTAAATTTTAACTTTTATTAATTTAAATTAATACAAAAAAACCGGTAATTTATTTATCGAGTTAGGAAGAACGTTGGTTGTGACGGTCGGCTATCGATAGCGTATCTG
****************************************************************************************************************************************************************************************************************************************************************************************************.((((......((((((..........))))))....))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 O001
Testis
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M053
female body
 GSM343915
embryo
...........AGAGCGGAAGCATCTCGTCTTTACTGAGT...................................................................................................................................................................................................................................................................................................................................................................... 29 2 1 6.00 6 4 0 0 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................................AGGCCATGTCACAACTGATT............................................................................................................................................................................................................................................... 20 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GAGGCCATGTCACAACTGATT............................................................................................................................................................................................................................................... 21 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................................CCACCACTCAAGTAAAACTACAGA........................................................................................................................................................................................................................................................................................................................................ 24 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.........................................................GTAAAACTACAGAATGAA................................................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AAGAGGCCATGTCACA...................................................................................................................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............AGGGGAAGCATCTCGTCTTTACTGAGTTT.................................................................................................................................................................................................................................................................................................................................................................... 29 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................CCAGCCACCACGCAAGTAAGACTA............................................................................................................................................................................................................................................................................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........AGAGCGGAAGCATCTCGTCTTTACTGAGTT..................................................................................................................................................................................................................................................................................................................................................................... 30 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AACAGAATGAAAAGCAATCAATGACGT................................................................................................................................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................AACCGGTAATTTATTTAT................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................TTCCAGCCACCACGCAAGTAAAACT............................................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................GTGCGAGTCGTTTTAAGAGGCCATG........................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............AGGGGAAGCATCTCGTCTTTACTGAGT...................................................................................................................................................................................................................................................................................................................................................................... 27 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........AGAGGGGAAGCATCTCGTCTTTACTGAGT...................................................................................................................................................................................................................................................................................................................................................................... 29 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................CATATTTAGTCAAGATTATATTC......................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................CTACAGAATGAAAAGCAATCAATGACGT................................................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............CGGAAGTATCTCGTCTTTACTGAGT...................................................................................................................................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................AGAATGAAAAGCAATCAATGACGTTTTAT.............................................................................................................................................................................................................................................................................................................. 29 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................CCACCACGCAAGTAAAACTA............................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GTCGTGCGAGTCGTTTTAAGA.................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TTCATCGATCTTGCGGGGCGA................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........AGAGCGGAAGCATCTCGTCTTTACTGAGTTT.................................................................................................................................................................................................................................................................................................................................................................... 31 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CTACATCGATCTTGCGGGG................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................TTCGTCGTGCGAGTCGTTTTAA.................................................................................................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........AGAGCGGAAGCATCTCGTCTTTACTG......................................................................................................................................................................................................................................................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GAGCGAGTCGTTTTCAGAGCC............................................................................................................................................................................................................................................................... 21 3 3 0.67 2 0 0 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................AGGCCATGTCACGACTGATTG.............................................................................................................................................................................................................................................. 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GAGGCCATGTCACAAATGATT............................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................TTGTTTGTGACGGTCGGC................. 18 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................TGACATATTTAACGAATA................................................................................................................................................................................................................................................................................................ 18 2 20 0.25 5 0 0 0 0 0 0 0 0 2 0 2 1 0
..............................................................................................................................................................TGCACGTTCACGTTCGT............................................................................................................................................................................................................................... 17 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................AGCGAGTCGTTTTCAGAG................................................................................................................................................................................................................................................................. 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................TGGTGCGGGGCGATTAT............................................................................................................................................................................ 17 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................CAGCCACCACGCTAGTAAG................................................................................................................................................................................................................................................................................................................................................ 19 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................GCAGCCACCACGCTAGTAAG................................................................................................................................................................................................................................................................................................................................................ 20 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................ATCAGTGACCTTTGATAT............................................................................................................................................................................................................................................................................................................ 18 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................GTCGTGCGAGAAGTTTT...................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................TGCAATTTGCTCGATATCT............................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................................................................................................................GTCGAGTTTGGAAGAATG................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:16955277-16955674 + dsi_7629 TACTCACTTTTTCTCGCCTTCATACAGCAGAAATGACTCAAAGGTCGGTGGTGCGTTCATTTTGATGTCTTAC--------TTTTCGTT-AGTTACTGCAAA--CT-ATAT--AAA-TTGTTTATTA----AAATCAACAGCACGC---TCAG----CAAAATTCTCCGGTACAGTGTTGAACAACGTGCAAGT-GCAA----------------GAAACGCTAAA----------------C---TAGCTATA--------TATA----------GCTAAAAGTA-GCTAGAA-CGC-CCC----------------G-CTAATATATTTTATTATTTTATAAATCATTTCGAATAT--AAGC---------------------A-TC--T------------AAGTAAAATAAAA-------CTTTTGCTT------------------------------------------------------------------------------------------------TGAATTTAAAATTG--------------------------------------------------------------------------------------------------AAAATAATTAAA-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------AATTATGTTTT---------------------------TTTGGCCATTAAA-------TAAATAGC---------------------------------------------------T----------------------CAATC-CTTCTTG-CAACCAACACTGCCAGCCGATAGCTATCGCATAGAC
droSec2 scaffold_7:1051887-1052283 + TACTCACTTTTTTTCGCCTTCGTAGAGGAGAAATGACTCAAAGGTCGGTGGTGCGTTCATTTTGATGTCTTAC--------TTTTCGTT-AGTTACTGCAA---AATATAT--AAA-TTGTTTATTA----AAATCAGCAGTACGC---TCAG----CAAAATTCACCGGTACAGTGTTGAACAACGCCCAAGT-GCAA----------------GAAACGCTAAA----------------C---TAGCTATA--------TATA----------GCTAAAAGTA-GCTAGAA-CGC-CCC----------------G-CTAATATATTTTATTATTTTATAAATCATTTCGAATAT--AAGC---------------------A-TA--T------------AAGTTAATTAAAA-------CTTGTGCTT------------------------------------------------------------------------------------------------TGAAATTGAAATTG--------------------------------------------------------------------------------------------------AAAATATTTGAC-----TAT---------------------------------------------------------------------------------------------------------------------------------------------------GCTTATGTT-T---------------------------TTTGGCCATTAAA-------TAAATAGC---------------------------------------------------T----------------------CAATC-CTTCTTG-CAACCAACACTGCCAGCCGATAGCTATCGCATAGAC
dm3 chr2L:17410245-17410639 + TACTCACTTTTTCTCGCCTTCATAGAGCAGAAATGACTCAAAGGTAGGTGGTGCGTTCATTTTGATGTCTTAC--------TTTTCGTT-AGTTACTGCAA---AACTTAT--AAA-TTGTTTATTA----AAATCAGCAGCACGC---TCAG----CAAAATTCTCCGGTACAGTGTTGACTAACGCCCAAGT-GCAA----------------CACAAGCTAAA----------------G---TAGCTATA--------TCTA----------GCAAAAAGTA-GCTAGAA-CGC-CTA----------------G-CTAATTTATTTTAGTATTTTATAAATCATTTTTAATGT--GAGC---------------------A-TCTAT-----------TAAATAAAATAAAA-------CTTGTACTT------------------------------------------------------------------------------------------------TGAA------TTTG--------------------------------------------------------------------------------------------------AAAATAATTTAA-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------GCTTATGTT-T---------------------------TTTGGTCATTAAA-------TAAATAGC---------------------------------------------------T----------------------TAATCACTTCTTG-CAACCAACACTGGCAGCCGATACCTATCGCATAGAC
droEre2 scaffold_4845:6840085-6840478 - TACTCACTTTTTCTCGCCTTCATAGAGCAGAAATGACTCGAAGGTCGGCGGTGCGTTCATTTTGATGCCTTAT--------TTTTCGTT-AGCTACAGCAA----A-TTAT--TAA-TTGTTTATTA----AATTCAGCAGCACGC---TCAG----CCAAATTCTGCGGTACAGTGTTGAATAACGTGCCAGT-GCAC----------------GGCACGCTAGA----------------G---TAGCTATA--------TCTA----------GCTAAAAGTA-GCTAGAA-ACC-CTC----------------A-CCTAATTGCTTTAGCATACTAAATTTAATTTGCAATATATAAAC---------------------A-TTTAT------------AAATTGAAAATGA-------CATGTCTTC------------------------------------------------------------------------------------------------TAAAATGTTAATTG--------------------------------------------------------------------------------------------------AAAATAATTTAA-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------GC-TCTGTT-T---------------------------TACGGCCATGCATAA--------------------CACGTACTTT--------------------------------------------------GC-AA-------------CG-CAACCAAAATTG-CAGCCGATAGCTATCGCGTAAAC
droYak3 2R:3691907-3692324 - TACTCACTTTTTCTCGCCCTCATAGAGCAGAAATGACTCGAAGGTCGGAGGTGCGTTCATTTTGATGCCTTAT--------TTTTCGTT-AGTTAAAGCAA---AT-ATAA--AAA-TTGTTTATTA----AAATCAGCAGCACGC---TCAG----CCAAATTCTCCGGCACAGTGTTGAACAACGTCCAAGT-GCGA----------------GGCACGCTGGA----------------G---AAGCTATGTATT----TCTA----------GCTAAAAGTA-GCTAGAA-ACTACCC--ATA-----------G-CTAAT-TCTTTTGGCATTCTACATCTCATTTTTAACAT--ACGC---------------------AATGTAT------------AAATGAAATATAA-------CTTGTTTTT------------------------------------------------------------------------------------------------AAAAATTGTAATTG--------------------------------------------------------------------------------------------------GAAATAATTGAA-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------GC-TATGTT-T---------------------------TATGGCCTTTCAA-------AACACGGCTGTTCCC---------T--------------------------------------------------GC-AACTCAACCACTTCTTG-CTACTAACATTT-CAGTCGATAGCTATCGCATAATC
droEug1 scf7180000409016:32846-33249 + TACTCACTTCTTCTCGCCTTCATAGAGCAGAAATGACTCAAAGGTGGGTGGCGCATTCATTTTGATCTAAACG--------TTTTCTTTAAAATACGACAA---AA-ATCA--AAA-TTGTTTATTA----AAATCAGCAGCACGC---TCCG-----AAAATTCGCTGGTATAGTGTTGAAAAACGCTTAAAC-ACCA----------------TA-CTGCTAAT----------------G---TAGCTATGTATG----TTAATAGAC----------AACTA-GCTAT--------TAAT--G----TTAATTTC-TT-------------------------------------GAAACTGTGCAAGCTCA---------------------------------------------------------------------------CAC--AAAA--AAAGTAT------------------------------------TATATA---TCCGCA------------------------------------------------------------------T-----------------------------------GTTATTTATATAT-----------TAT-----------------------------------------------------TTTGTTATTACTACACTAGC---------C-----------TT--------------------------------------------------TTA-----TATTT-CATATATATT---------------------------TCTGGCTATTAAA-------AATCTAGCTTCTTTT---------AT-----------------A----------------------------TAC--AA------------AG-GCTCACCAGCACAG-CAAACGATAGATATCGCATAGAC
droBia1 scf7180000302422:6312074-6312350 - TACTCACTTTTTCTCGCCTTCATAGAGCAGGAATGACTCAAAGGTGGGTGGCGCATTCATTTTTTATAGT---------TATATTCGTTAAATTACAACCA----A-ATCG--AAA-TTGTTTATTA----AATTCGCCACCACGC---TCAG-----AAAACTCGCAGGTTTAGTGTTGGAAAACGCTGTAAC-GCATTT---CA---------GGGGTGCTGTT----------------G---TAGCTAAA--------TCAA----------GCTGGAATTA-GCTAGGA-AAAT-TAA-AAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TACAT--------------------------------------------------------------TTTAAATG----------------------------------------------------------------------AAAAT-----ATAAA----T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGTATGTT--------------------------------------------------TA-AA-------------CA-AAACA-----------------------AAATAAAA
droTak1 scf7180000415079:180808-181345 - TACTCACTTTTTCTCGCCTTCATAGAGCAGGAATGACTCAAAGGTGGGTGGCGCATTCATTTTGGACGCT---------TATATTGGGTAAATTACAGGCT---AA-ATCG--AAA-TTGTTTATTG----AAATCAGCACCACGC---TCAG-----AAAATTCGCTTGTCTAGTGTTGAAAAACGCGTTAAA-GCTAGA---TA---------GAGATGCTAAA----------------T---CAGCTATTTATATATATTTA----------GCCAAAACTC-GCCATATTTATAAATAG--G----TTGGTTACAGT-------------------------------------GAAACCCTGTATGTTCAAATATTTCGAAAG-------------------------------------------------------------------------------------------------------GACGAACTGAAATTAA---AATTACAG------------------------------------------------------------------AAAATTCTTAAAAGAAGAATTTTGTAAATTACATCATGGTTTTCAT----------------------------------------------------AACTTATGAATCATAAGACTTTTTCCTTTCTA-------------CACC-----------ATATAGTATACACCTTAGTTCAAAACTTATTAAGAATAACTAAATTAGTTTGTATAATTTAATTC-CTTACATTTC---------------------------TTTGGCTTTTTAA-------AATCTAGCTAGTTTT---------T--------------------------------------------------GA-AAGTCTTCCACA-AT-GTTGGTCATCTGTG-CATGCGATAGGTATCGCATAGGT
droEle1 scf7180000491046:97348-97791 + AACTCACTTTTTCTCGCCTTCGTACAGCAGGAATGACTCAAAGGTAGGCGGCGCATTCATTTTGTATATT---------TATTTTTGTTAAATTACAGCAA---AA-ACCG--AAA-TTGTTTATTA----TAAACAGCAGCACGC---TCAG-----AAAATTCCGTGGTGTAGTGTTGGAAAACGCAATAAG-GCATTG---TG---------GTTCTGGCCAT----------------T---TAACTATT--------TTAA----------GCTAAAAAAAGGCTAGGA-AAAT-CAA-ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAATTTAACATGTTTTTGAAAGCA--TATTCAAGTTAT---ATATCCAG------------------------------------------------------------------ATAGTTTTTAAA-----------------------------------TTTATGTTTGTCT--------------------------------------AACTCTTTAAGCATATGGCCAATTT-----------------------------------------------------------------------------------------------ATTGT-CAT-TATATC-----TGCTACTAG-------------TTTGGGTATTTA--------AATCTAGCTTTTCAT---------TCCAAACGGTAATT----------------------AAAAAACCGCTGTACGAAT------------CG-GTTTGCCAGCACTG-CAACCGATAAGTATCGCATAGAC
droRho1 scf7180000771542:16792-17286 + TACCCACTTTTTCTCGCCTTCGTAGAGTAGGAATGACTCAAAGGTGGGTGGCGCATTCATTTTATATATT---------TATTTTTGTTAAATTACACCAA---AA-ATCG--AAA-TTGTTTATTA----TAAACAGCAGCACGC---TCAG-----GAAATTCGCTGGGATAGTGTTGAACAACGCAAAAAC-GCATTG---GT---------GTACTGCCAAC----------------T---GAGATATT--------TCTA----------GC-AAAACTA-GCTGAAA-AATAATAAG--A----TT---------------------------------AATTTTTAGAACTAAAACG----ATGTTAAAATATAGCTGAAGTCTAAGAGGAATGTTAAATAAACTAGAA------------------------------------------------------------------------------------------AAATTTATCCGG---AATAATTTAAA------TTTA--------------------------------------------------------------------------------------------------AAACTAGTTAAAATTTT-----------------------G-TGTCCTTCA----------TTTGTTATTATTTACCTAGCGGTGTTCTCTAAATTGTGTTTAT--------------------------------------------------T-----------------TATT-T---------------------------TTTGGCTATCTAA-------AATCTAGCTATTTTT---------ATTTGTCGGTAATT----------------------TG-AAACCGCTATCTGAAA------------GA-GTTTGTCAGAACTG-CAATCGATAACTATCGCAAAGGC
droFic1 scf7180000453855:175223-175614 + TACTCACTTTTTCTCGCCTTCGTACAGCAAAAATGACTCAAAGGTTGGTGGCGCATTCATTTTGTATGGG---------TATTTGCG-CAAATTTCAGCTA---AA-ATGG--AAA-TTGTTTATTA----AAATCAGCAGCACGC---TCAG-----AAAATTGGCTCGAGTAGTGTTGGGAAACGGCTAAAA-ACGTTG---GA---------GTGTTGATAGT----------------G---TTGCTATT--------TTAC----------CCTAAATATA-GTTAGGA-TAAA-GAA-ATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAT------------------------------------------------------------------------------------------------------------------------------------TTTGTGAGTAAAA-----ATTTT----T------------------------------------------------GTTGCCCATCA----------TTCATTGTTCTTTACTT-CCAGACTCCACC-----------AT--------------------------------------------------T-----------------TGTA-T---------------------------TTT------------GAGTACGTCTAGCTATTTTT---------GT-----------------AATCTAAGTAAACAGCTGG-TAACCCCA-AAC--AA------------AG-GCTTCGCAACACTG-CAACCGATAGATATCGCGGAGCC
droKik1 scf7180000302472:714331-714743 + TACTCACTTCTTCTCGCCTTCGTACAGCAGGAACGATTCGAAGGTTGGTGGCGCATTCATTGTTTAAGGT---------TTATTTAGTTAATATTTTGAGA---AA-ATTG--CAA-TTGTTTATAA----AAATCAGCCGCACGC----CAG-----AAAATTCGCTGTTTTAGTGTTGGAAAACGAATAAAACGAAT-CT---G------------------------------------A---TAGCTATT--------TTAG----------ACTAAATATG-GC-------------------GGTTT-TTTAG-CT-------------------------------------AAGATTTTG------------------------------------------------------------TAT---------AGATTTGTTTAAATGAAATG--AAATTAT------------------------------------AAGATT---ATGACCCTAATTA-----A------TTAAACACTAGTTA-ATTCTTCTTTAAAGAATACATTGTCTATATAATAGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----AATTAAATTATATTTT-----TCCCT----GTAGATTTAGCTT---------------TAACAAATCTAGCTAAT-------------------------TTAAAAA-----------------------CGCA----------------------------------GTT-TGGTATTTTCGTATTGCATAGTA
droAna3 scaffold_12916:3464199-3464341 - TACTCACTTCTTCTCGCCTTCATACAGCAGGAATGATTCGAATGTGGGTGGTGCGTTCATTTTGTTTAGT---------TTATTTGTTC-AATTTCAGAAA----A-ATAC--GAA-TTGTTTACTA----TATTCT---GCACGC---TTAG-----A-TATTTTTTAGCTTAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396737:1306900-1307027 + AACTTACTTCTTCTCGCCTTCATACAGCAGGAATGACTCGAATGTGGGTGGCGCATTCATTTTGCTTAGT---------AAATTTGTTT-AATTTCTGAAA----A-ATGC--GAA-TTGTTTACGA----TATTCTG---CACGCTTCTCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 4_group3:3503272-3503635 + TACTCACTTCTTCTCGCCCTCGTACAGCAGGAAAGATTCGAATGTTGGTGGCGCATTCATTTTGTATGCG---------TT-TCTATCTAGTTTTTAGTCA---AACTTGT--AAT-TTGTTTATGAA--AAAATCAGCCGCACGC------------CAAATGCGTATGTCCAGTGTTGGTAAAGTACTAAAAAAAA-TGT---A---------T------------------------------TAG-----------------TAAAAATCGGAC-----------TAT--------TTAA-GGAGGATTTATTTT-CT-------------------------------------AAAACTGTG------------------------------------------------------------TGC---------AAAACTTC---CACGAAAAA--AAAGTGG------------------------------------GAGCTC---TCGGCTCTC---------------------------------------------------------------T-----------------------------------GCTGTATGAAAAT-----------AAA------------AGAGTTATTTTTACTTCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------ACATTTTCAGCAC---------------TGATACGGTCAGCTAC--------------------------CGATAAA-----------------------CGCT----------------------------------GAG-CTATCGATAGCTATCGCTC-GGC
droPer2 scaffold_1:4982635-4982998 + TACTCACTTCTTCTCGCCCTCGTACAGCAGGAAAGATTCGAATGTTGGTGGCGCATTCATTTTATATGCG---------TT-TCTATCTAGTTTTTAGTCA---AATTTGT--AAT-TTGTTTATGAA--AAAATCAGCCGCACGC------------CAAATGCGTATGTCCAGTGTTGGTAAAGTACTAAAAAAAA-TGT---A---------T------------------------------TAG-----------------TAAAAATCTGAC-----------TAT--------TTAA-GGAGGATTTATTTT-CT-------------------------------------AAAACTGTG------------------------------------------------------------TGC---------AAAACTTC---CACGAAAAA--AAAGTGG------------------------------------GAGCTC---TCGGCTCTC---------------------------------------------------------------T-----------------------------------GCTGTATGAAAAT-----------AAA------------AGAGTTATTTTTACTTCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------ACATTTTCAGCAC---------------TGATACGGTCAGCTAC--------------------------CGATAAA-----------------------CGCT----------------------------------GAG-CTATCGATAGCTATCGCTC-GGC
droWil2 scf2_1100000004585:8003215-8003277 - TACTTACTTCTTTTCACCCTCGTACAGCAAAAATGATTCAAAGGTTGGCGGGGCATTCATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13246:574090-574494 - TACTCACTTTTTCTCGCCTTCATAGAGCAAAAACGACTCAAAAGTGGGTGGCGCATTCATTTTGACGTTTTAA--------TTATGAAC-AACAGAAAGAA---TA-AATA--CAA-TTGTTTATAA----AAATGAGACGCAAAC----AAG-----AAAATGGAACGCGCGTGTGTTGGAAAATATATGAAATACATT-TACCAGCACTGTAACTATCGATAATTCATCGCATTGCTTGCGAATTCATTTTG--------CCCA----------TCTCTGTTGGTGTTGAAA-AACT-TC----------------------------------------ATTTCATCTTCA-------AGAACCATTAGTTCGTGC-----------------------------AAAACAAAAATCTAATTTTGTGT---------TTATTTTGTTAAATGAAATGTGAAATACT------------------------------------CAGC-----------------------A------ACAAACGATAGCCAAATTGTT--------------------------------------------------------CACCAAAGTTTTAA--------------------------------------------------------------------------------TTCTT-------------CA-T-----------ATATAGTGTACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGTGTCT
droMoj3 scaffold_6500:539518-539951 - TACTTACTTTTTCTCGCCTTCGTAGAGCAGAAACGATTCAAATGTGGGTGGGGCATTCATTTTGTATTTT-AT--------TTATAAGCAA----ATGCAATTCAA-ATAAAAAATTTTGTTTAGAAAACAAAATCAGTCGTACAC---A-AGAAAATGTAATGC-GCGAGACACTGCCACACTTAGCAGCACT-GCAA----------------CTATCGATAAGTCATCGTATTGCTGGCGA--TAGTTCTG--------TTTA----------GCGATGATAGTGTTGCGA-AAAT-TC----------------------------------------ATTTCATTGGAA-------AGCATTACTAGTTCATAG-----------------------------ATATCAAAA-------TATGCGCTGAGAAACAT---------------------------TATT--------------------------------TTAT---ATATGATA------------------------------------------------------------------ATAGATTTTAAA-----------------------------------TA-ATGTG-GACAAAATTAAA-----TTT--------------------------------------------------------------------------------------------------------------------------------------------------------TGTA-AAGTGCCCCTT---A-------------TACGCATACAATA-------TAACTACC---------------------------------------------------A----------------------CTACCACTGCATG-CGAACAAAAT---CCGATAAAACCACTCAAATGAAC
droGri2 scaffold_15252:16666636-16666764 + GACTCACTTTTTCTCGCCCTCATACAGCAGAAACGATTCAAATGTGGGCGGTGCATTCATTTTGCTGTTTTAATTTACTTA-TTTATTT-ATGTTTTAT-A---AA-ATTG--CAA-TTGTTTGTGA----AAATCAACTGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TACTCACTTTTTCTCGCCTTCATACAGCAGAAATGACTCAAAGGTCGGTGGTGCGTTCATTTTGATGTCTTAC--------TTTTCGTT-AGTTACTGCAAA--CT-ATAT--AAA-TTGTTTATTA----AAATCAACAGCACGC---TCAG----CAAAATTCTCCGGTACAGTGTTGAACAACGTGCAAGT-GCAA----------------GAAACGCTAAA----------------C---TAGCTATA--------TATA----------GCTAAAAGTA-GCTAGAA-CGC-CCC----------------G-CTAATATATTTTATTATTTTATAAATCATTTCGAATAT--AAGC---------------------A-TC--T------------AAGTAAAATAAAA-------CTTTTGCTT------------------------------------------------------------------------------------------------TGAATTTAAAATTG--------------------------------------------------------------------------------------------------AAAATAATTAAA-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------AATTATGTTTT---------------------------TTTGGCCATTAAA-------TAAATAGC---------------------------------------------------T----------------------CAATC-CTTCTTG-CAACCAACACTGCCAGCCGATAGCTATCGCATAGACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................CTCAAAGGTCGGTGGTGCGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
.....................................TCAAAGGTCGGTGGTGCGTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
.....................................................................TTAC--------TTTTCGTT-AGTTACTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..............................................................................................ACTGCAAA--CT-ATAT--AAA-TTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
...............................AATGACTCAAAGGTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
......................................................................TAC--------TTTTCGTT-AGTTACTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
..................................................GTGCGTTCATTTTGATGTCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
...................................ACTCAAAGGTCGGTGGTGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
....................................................................................................................................AATCAACAGCACGC---TCAG----CAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
..........................................................................................................................TATTA----AAATCAACAGCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
..........................................................................................................................TATTA----AAATCAACAGCACGC---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
...................................................................................................................................AAATCAACAGCACGC---TCAG----CAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001000000000000
...................................................................................TTCGTT-AGTTACTGCAAA--CT-A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
...............................................................................................................................................................AAATTCTCCGGTACAGTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
......................................CAAAGGTCGGTGGTGCGTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
.....................................................................TTAC--------TTTTCGTT-AGTTACTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
droSec2
TACTCACTTTTTTTCGCCTTCGTAGAGGAGAAATGACTCAAAGGTCGGTGGTGCGTTCATTTTGATGTCTTAC--------TTTTCGTT-AGTTACTGCAA---AATATAT--AAA-TTGTTTATTA----AAATCAGCAGTACGC---TCAG----CAAAATTCACCGGTACAGTGTTGAACAACGCCCAAGT-GCAA----------------GAAACGCTAAA----------------C---TAGCTATA--------TATA----------GCTAAAAGTA-GCTAGAA-CGC-CCC----------------G-CTAATATATTTTATTATTTTATAAATCATTTCGAATAT--AAGC---------------------A-TA--T------------AAGTTAATTAAAA-------CTTGTGCTT------------------------------------------------------------------------------------------------TGAAATTGAAATTG--------------------------------------------------------------------------------------------------AAAATATTTGAC-----TAT---------------------------------------------------------------------------------------------------------------------------------------------------GCTTATGTT-T---------------------------TTTGGCCATTAAA-------TAAATAGC---------------------------------------------------T----------------------CAATC-CTTCTTG-CAACCAACACTGCCAGCCGATAGCTATCGCATAGACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................CTCAAAGGTCGGTGGTGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
.........................................................................................................................TTATTA----AAATCAGCAGTACGC---T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
dm3
TACTCACTTTTTCTCGCCTTCATAGAGCAGAAATGACTCAAAGGTAGGTGGTGCGTTCATTTTGATGTCTTAC--------TTTTCGTT-AGTTACTGCAA---AACTTAT--AAA-TTGTTTATTA----AAATCAGCAGCACGC---TCAG----CAAAATTCTCCGGTACAGTGTTGACTAACGCCCAAGT-GCAA----------------CACAAGCTAAA----------------G---TAGCTATA--------TCTA----------GCAAAAAGTA-GCTAGAA-CGC-CTA----------------G-CTAATTTATTTTAGTATTTTATAAATCATTTTTAATGT--GAGC---------------------A-TCTAT-----------TAAATAAAATAAAA-------CTTGTACTT------------------------------------------------------------------------------------------------TGAA------TTTG--------------------------------------------------------------------------------------------------AAAATAATTTAA-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------GCTTATGTT-T---------------------------TTTGGTCATTAAA-------TAAATAGC---------------------------------------------------T----------------------TAATCACTTCTTG-CAACCAACACTGGCAGCCGATACCTATCGCATAGACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................TTTTGATGTCTTAC--------TTTTCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000010000000000000000000000000000000000000000000010000000
..........................................................................................................................TATTA----AAATCAGCAGCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000001000000000
...................................................................................................................A-TTGTTTATTA----AAATCAGCAGCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000
.........................................................................................................................TTATTA----AAATCAGCAGCACGC---T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000
................................................TGGTGCGTTCATTTTGATGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..........................................................................................................................TATTA----AAATCAGCAGCACGC---TCAG----C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................TCAG----CAAAATTCTCCGGTACAGTGTTGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTA----AAATCAGCAGCACGC---T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCGCCTTCATAGAGCAGAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................G----CAAAATTCTCCGGTACAGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................................................................................TATTA----AAATCAGCAGCACGC---T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................CATTTTGATGTCTTAC--------TTTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TTGATGTCTTAC--------TTTTCGTT-AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTA----AAATCAGCAGCACGC---TCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................................................................................................TGTTGACTAACGCCCAAGT-GCAA----------------CA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TCCGGTACAGTGTTGACTAACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AATGACTCAAAGGTAGGTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................CAAAGGTAGGTGGTGCGTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCAAAGGTAGGTGGTGCGTTCATTTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................CTGCAA---AACTTAT--AAA-TTGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTATTA----AAATCAGCAGCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
droEre2
TACTCACTTTTTCTCGCCTTCATAGAGCAGAAATGACTCGAAGGTCGGCGGTGCGTTCATTTTGATGCCTTAT--------TTTTCGTT-AGCTACAGCAA----A-TTAT--TAA-TTGTTTATTA----AATTCAGCAGCACGC---TCAG----CCAAATTCTGCGGTACAGTGTTGAATAACGTGCCAGT-GCAC----------------GGCACGCTAGA----------------G---TAGCTATA--------TCTA----------GCTAAAAGTA-GCTAGAA-ACC-CTC----------------A-CCTAATTGCTTTAGCATACTAAATTTAATTTGCAATATATAAAC---------------------A-TTTAT------------AAATTGAAAATGA-------CATGTCTTC------------------------------------------------------------------------------------------------TAAAATGTTAATTG--------------------------------------------------------------------------------------------------AAAATAATTTAA-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------GC-TCTGTT-T---------------------------TACGGCCATGCATAA--------------------CACGTACTTT--------------------------------------------------GC-AA-------------CG-CAACCAAAATTG-CAGCCGATAGCTATCGCGTAAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TACTCACTTTTTCTCGCCCTCATAGAGCAGAAATGACTCGAAGGTCGGAGGTGCGTTCATTTTGATGCCTTAT--------TTTTCGTT-AGTTAAAGCAA---AT-ATAA--AAA-TTGTTTATTA----AAATCAGCAGCACGC---TCAG----CCAAATTCTCCGGCACAGTGTTGAACAACGTCCAAGT-GCGA----------------GGCACGCTGGA----------------G---AAGCTATGTATT----TCTA----------GCTAAAAGTA-GCTAGAA-ACTACCC--ATA-----------G-CTAAT-TCTTTTGGCATTCTACATCTCATTTTTAACAT--ACGC---------------------AATGTAT------------AAATGAAATATAA-------CTTGTTTTT------------------------------------------------------------------------------------------------AAAAATTGTAATTG--------------------------------------------------------------------------------------------------GAAATAATTGAA-----TTT---------------------------------------------------------------------------------------------------------------------------------------------------GC-TATGTT-T---------------------------TATGGCCTTTCAA-------AACACGGCTGTTCCC---------T--------------------------------------------------GC-AACTCAACCACTTCTTG-CTACTAACATTT-CAGTCGATAGCTATCGCATAATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................TATTA----AAATCAGCAGCACGC---TCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
droEug1
TACTCACTTCTTCTCGCCTTCATAGAGCAGAAATGACTCAAAGGTGGGTGGCGCATTCATTTTGATCTAAACG--------TTTTCTTTAAAATACGACAA---AA-ATCA--AAA-TTGTTTATTA----AAATCAGCAGCACGC---TCCG-----AAAATTCGCTGGTATAGTGTTGAAAAACGCTTAAAC-ACCA----------------TA-CTGCTAAT----------------G---TAGCTATGTATG----TTAATAGAC----------AACTA-GCTAT--------TAAT--G----TTAATTTC-TT-------------------------------------GAAACTGTGCAAGCTCA---------------------------------------------------------------------------CAC--AAAA--AAAGTAT------------------------------------TATATA---TCCGCA------------------------------------------------------------------T-----------------------------------GTTATTTATATAT-----------TAT-----------------------------------------------------TTTGTTATTACTACACTAGC---------C-----------TT--------------------------------------------------TTA-----TATTT-CATATATATT---------------------------TCTGGCTATTAAA-------AATCTAGCTTCTTTT---------AT-----------------A----------------------------TAC--AA------------AG-GCTCACCAGCACAG-CAAACGATAGATATCGCATAGACSizeHit CountTotal NormTotal
No Reads
droBia1
TACTCACTTTTTCTCGCCTTCATAGAGCAGGAATGACTCAAAGGTGGGTGGCGCATTCATTTTTTATAGT---------TATATTCGTTAAATTACAACCA----A-ATCG--AAA-TTGTTTATTA----AATTCGCCACCACGC---TCAG-----AAAACTCGCAGGTTTAGTGTTGGAAAACGCTGTAAC-GCATTT---CA---------GGGGTGCTGTT----------------G---TAGCTAAA--------TCAA----------GCTGGAATTA-GCTAGGA-AAAT-TAA-AAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TACAT--------------------------------------------------------------TTTAAATG----------------------------------------------------------------------AAAAT-----ATAAA----T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGTATGTT--------------------------------------------------TA-AA-------------CA-AAACA-----------------------AAATAAAASizeHit CountTotal NormTotal
No Reads
droTak1
TACTCACTTTTTCTCGCCTTCATAGAGCAGGAATGACTCAAAGGTGGGTGGCGCATTCATTTTGGACGCT---------TATATTGGGTAAATTACAGGCT---AA-ATCG--AAA-TTGTTTATTG----AAATCAGCACCACGC---TCAG-----AAAATTCGCTTGTCTAGTGTTGAAAAACGCGTTAAA-GCTAGA---TA---------GAGATGCTAAA----------------T---CAGCTATTTATATATATTTA----------GCCAAAACTC-GCCATATTTATAAATAG--G----TTGGTTACAGT-------------------------------------GAAACCCTGTATGTTCAAATATTTCGAAAG-------------------------------------------------------------------------------------------------------GACGAACTGAAATTAA---AATTACAG------------------------------------------------------------------AAAATTCTTAAAAGAAGAATTTTGTAAATTACATCATGGTTTTCAT----------------------------------------------------AACTTATGAATCATAAGACTTTTTCCTTTCTA-------------CACC-----------ATATAGTATACACCTTAGTTCAAAACTTATTAAGAATAACTAAATTAGTTTGTATAATTTAATTC-CTTACATTTC---------------------------TTTGGCTTTTTAA-------AATCTAGCTAGTTTT---------T--------------------------------------------------GA-AAGTCTTCCACA-AT-GTTGGTCATCTGTG-CATGCGATAGGTATCGCATAGGTSizeHit CountTotal NormTotal
No Reads
droEle1
AACTCACTTTTTCTCGCCTTCGTACAGCAGGAATGACTCAAAGGTAGGCGGCGCATTCATTTTGTATATT---------TATTTTTGTTAAATTACAGCAA---AA-ACCG--AAA-TTGTTTATTA----TAAACAGCAGCACGC---TCAG-----AAAATTCCGTGGTGTAGTGTTGGAAAACGCAATAAG-GCATTG---TG---------GTTCTGGCCAT----------------T---TAACTATT--------TTAA----------GCTAAAAAAAGGCTAGGA-AAAT-CAA-ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAATTTAACATGTTTTTGAAAGCA--TATTCAAGTTAT---ATATCCAG------------------------------------------------------------------ATAGTTTTTAAA-----------------------------------TTTATGTTTGTCT--------------------------------------AACTCTTTAAGCATATGGCCAATTT-----------------------------------------------------------------------------------------------ATTGT-CAT-TATATC-----TGCTACTAG-------------TTTGGGTATTTA--------AATCTAGCTTTTCAT---------TCCAAACGGTAATT----------------------AAAAAACCGCTGTACGAAT------------CG-GTTTGCCAGCACTG-CAACCGATAAGTATCGCATAGACSizeHit CountTotal NormTotal
No Reads
droRho1
TACCCACTTTTTCTCGCCTTCGTAGAGTAGGAATGACTCAAAGGTGGGTGGCGCATTCATTTTATATATT---------TATTTTTGTTAAATTACACCAA---AA-ATCG--AAA-TTGTTTATTA----TAAACAGCAGCACGC---TCAG-----GAAATTCGCTGGGATAGTGTTGAACAACGCAAAAAC-GCATTG---GT---------GTACTGCCAAC----------------T---GAGATATT--------TCTA----------GC-AAAACTA-GCTGAAA-AATAATAAG--A----TT---------------------------------AATTTTTAGAACTAAAACG----ATGTTAAAATATAGCTGAAGTCTAAGAGGAATGTTAAATAAACTAGAA------------------------------------------------------------------------------------------AAATTTATCCGG---AATAATTTAAA------TTTA--------------------------------------------------------------------------------------------------AAACTAGTTAAAATTTT-----------------------G-TGTCCTTCA----------TTTGTTATTATTTACCTAGCGGTGTTCTCTAAATTGTGTTTAT--------------------------------------------------T-----------------TATT-T---------------------------TTTGGCTATCTAA-------AATCTAGCTATTTTT---------ATTTGTCGGTAATT----------------------TG-AAACCGCTATCTGAAA------------GA-GTTTGTCAGAACTG-CAATCGATAACTATCGCAAAGGCSizeHit CountTotal NormTotal
No Reads
droFic1
TACTCACTTTTTCTCGCCTTCGTACAGCAAAAATGACTCAAAGGTTGGTGGCGCATTCATTTTGTATGGG---------TATTTGCG-CAAATTTCAGCTA---AA-ATGG--AAA-TTGTTTATTA----AAATCAGCAGCACGC---TCAG-----AAAATTGGCTCGAGTAGTGTTGGGAAACGGCTAAAA-ACGTTG---GA---------GTGTTGATAGT----------------G---TTGCTATT--------TTAC----------CCTAAATATA-GTTAGGA-TAAA-GAA-ATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAT------------------------------------------------------------------------------------------------------------------------------------TTTGTGAGTAAAA-----ATTTT----T------------------------------------------------GTTGCCCATCA----------TTCATTGTTCTTTACTT-CCAGACTCCACC-----------AT--------------------------------------------------T-----------------TGTA-T---------------------------TTT------------GAGTACGTCTAGCTATTTTT---------GT-----------------AATCTAAGTAAACAGCTGG-TAACCCCA-AAC--AA------------AG-GCTTCGCAACACTG-CAACCGATAGATATCGCGGAGCCSizeHit CountTotal NormTotal
No Reads
droKik1
TACTCACTTCTTCTCGCCTTCGTACAGCAGGAACGATTCGAAGGTTGGTGGCGCATTCATTGTTTAAGGT---------TTATTTAGTTAATATTTTGAGA---AA-ATTG--CAA-TTGTTTATAA----AAATCAGCCGCACGC----CAG-----AAAATTCGCTGTTTTAGTGTTGGAAAACGAATAAAACGAAT-CT---G------------------------------------A---TAGCTATT--------TTAG----------ACTAAATATG-GC-------------------GGTTT-TTTAG-CT-------------------------------------AAGATTTTG------------------------------------------------------------TAT---------AGATTTGTTTAAATGAAATG--AAATTAT------------------------------------AAGATT---ATGACCCTAATTA-----A------TTAAACACTAGTTA-ATTCTTCTTTAAAGAATACATTGTCTATATAATAGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----AATTAAATTATATTTT-----TCCCT----GTAGATTTAGCTT---------------TAACAAATCTAGCTAAT-------------------------TTAAAAA-----------------------CGCA----------------------------------GTT-TGGTATTTTCGTATTGCATAGTASizeHit CountTotal NormTotal
No Reads
droAna3
TACTCACTTCTTCTCGCCTTCATACAGCAGGAATGATTCGAATGTGGGTGGTGCGTTCATTTTGTTTAGT---------TTATTTGTTC-AATTTCAGAAA----A-ATAC--GAA-TTGTTTACTA----TATTCT---GCACGC---TTAG-----A-TATTTTTTAGCTTAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AACTTACTTCTTCTCGCCTTCATACAGCAGGAATGACTCGAATGTGGGTGGCGCATTCATTTTGCTTAGT---------AAATTTGTTT-AATTTCTGAAA----A-ATGC--GAA-TTGTTTACGA----TATTCTG---CACGCTTCTCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TACTCACTTCTTCTCGCCCTCGTACAGCAGGAAAGATTCGAATGTTGGTGGCGCATTCATTTTGTATGCG---------TT-TCTATCTAGTTTTTAGTCA---AACTTGT--AAT-TTGTTTATGAA--AAAATCAGCCGCACGC------------CAAATGCGTATGTCCAGTGTTGGTAAAGTACTAAAAAAAA-TGT---A---------T------------------------------TAG-----------------TAAAAATCGGAC-----------TAT--------TTAA-GGAGGATTTATTTT-CT-------------------------------------AAAACTGTG------------------------------------------------------------TGC---------AAAACTTC---CACGAAAAA--AAAGTGG------------------------------------GAGCTC---TCGGCTCTC---------------------------------------------------------------T-----------------------------------GCTGTATGAAAAT-----------AAA------------AGAGTTATTTTTACTTCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------ACATTTTCAGCAC---------------TGATACGGTCAGCTAC--------------------------CGATAAA-----------------------CGCT----------------------------------GAG-CTATCGATAGCTATCGCTC-GGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TACTCACTTCTTCTCGCCCTCGTACAGCAGGAAAGATTCGAATGTTGGTGGCGCATTCATTTTATATGCG---------TT-TCTATCTAGTTTTTAGTCA---AATTTGT--AAT-TTGTTTATGAA--AAAATCAGCCGCACGC------------CAAATGCGTATGTCCAGTGTTGGTAAAGTACTAAAAAAAA-TGT---A---------T------------------------------TAG-----------------TAAAAATCTGAC-----------TAT--------TTAA-GGAGGATTTATTTT-CT-------------------------------------AAAACTGTG------------------------------------------------------------TGC---------AAAACTTC---CACGAAAAA--AAAGTGG------------------------------------GAGCTC---TCGGCTCTC---------------------------------------------------------------T-----------------------------------GCTGTATGAAAAT-----------AAA------------AGAGTTATTTTTACTTCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------ACATTTTCAGCAC---------------TGATACGGTCAGCTAC--------------------------CGATAAA-----------------------CGCT----------------------------------GAG-CTATCGATAGCTATCGCTC-GGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TACTTACTTCTTTTCACCCTCGTACAGCAAAAATGATTCAAAGGTTGGCGGGGCATTCATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TACTCACTTTTTCTCGCCTTCATAGAGCAAAAACGACTCAAAAGTGGGTGGCGCATTCATTTTGACGTTTTAA--------TTATGAAC-AACAGAAAGAA---TA-AATA--CAA-TTGTTTATAA----AAATGAGACGCAAAC----AAG-----AAAATGGAACGCGCGTGTGTTGGAAAATATATGAAATACATT-TACCAGCACTGTAACTATCGATAATTCATCGCATTGCTTGCGAATTCATTTTG--------CCCA----------TCTCTGTTGGTGTTGAAA-AACT-TC----------------------------------------ATTTCATCTTCA-------AGAACCATTAGTTCGTGC-----------------------------AAAACAAAAATCTAATTTTGTGT---------TTATTTTGTTAAATGAAATGTGAAATACT------------------------------------CAGC-----------------------A------ACAAACGATAGCCAAATTGTT--------------------------------------------------------CACCAAAGTTTTAA--------------------------------------------------------------------------------TTCTT-------------CA-T-----------ATATAGTGTACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGTGTCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................TCTCTGTTGGTGTTGAAA-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002020000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................AACCATTAGTTCGTGC-----------------------------AAAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................TATATGAAATACATT-TACCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
TACTTACTTTTTCTCGCCTTCGTAGAGCAGAAACGATTCAAATGTGGGTGGGGCATTCATTTTGTATTTT-AT--------TTATAAGCAA----ATGCAATTCAA-ATAAAAAATTTTGTTTAGAAAACAAAATCAGTCGTACAC---A-AGAAAATGTAATGC-GCGAGACACTGCCACACTTAGCAGCACT-GCAA----------------CTATCGATAAGTCATCGTATTGCTGGCGA--TAGTTCTG--------TTTA----------GCGATGATAGTGTTGCGA-AAAT-TC----------------------------------------ATTTCATTGGAA-------AGCATTACTAGTTCATAG-----------------------------ATATCAAAA-------TATGCGCTGAGAAACAT---------------------------TATT--------------------------------TTAT---ATATGATA------------------------------------------------------------------ATAGATTTTAAA-----------------------------------TA-ATGTG-GACAAAATTAAA-----TTT--------------------------------------------------------------------------------------------------------------------------------------------------------TGTA-AAGTGCCCCTT---A-------------TACGCATACAATA-------TAACTACC---------------------------------------------------A----------------------CTACCACTGCATG-CGAACAAAAT---CCGATAAAACCACTCAAATGAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GACTCACTTTTTCTCGCCCTCATACAGCAGAAACGATTCAAATGTGGGCGGTGCATTCATTTTGCTGTTTTAATTTACTTA-TTTATTT-ATGTTTTAT-A---AA-ATTG--CAA-TTGTTTGTGA----AAATCAACTGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:25 PM