ID:

dsi_7583

 Coordinate:

2l:8048912-8049061 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.7 -25.6 -25.4

Flybase annnotation

Antisense to three_prime_UTR [2l_8048721_8049676_-]; Antisense to exon [2l_8048721_8049676_-]

No Repeatable elements found

Sense Strand Reads

TATTTGTTGCTTCGGTTTGTGTAACGTTTTAATGTATTTCATTGATACTGCAATCTGCAATTATTTGCTACTTTGGACAAAAGGTTTCATTGGTGTTTCCCCTACTGGAAATCCCAATAGTTTGGTATTCATTTTCTCATTGCTGGGTGGTGGTGCCTATGCGGTAGATGAAACGACTTCAAAGTTATCCTTTTTGGCAGTTGGTTACAACAACGAGTGTTTTCCCCTCGGGAGTGCGGAGATGTGGGCT
***********************************************************************((((((......((((((((((.((((((......)))))).)))).................(((.(((((((((((....)))))).))))))))))))))...))))))....*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M023
head
 M053
female body
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
 O002
Head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR1275487
Male larvae
.......................................................................TTTGGACAAAAGGTTTCATTGGTGTT......................................................................................................................................................... 26 0 1 14.00 14 10 0 1 2 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................TGCGGTAGATGAAACGACTTCAAAGTTA............................................................... 28 0 1 9.00 9 0 0 3 2 3 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................TATGCGGTAGATGAAACGACTTCAAAGT................................................................. 28 0 1 8.00 8 2 1 0 1 3 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................TGCGGTAGATGAAACGACTTCAAAGT................................................................. 26 0 1 8.00 8 2 1 3 0 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGTTTTCCCCTCGGGAGTGCGGAGA........ 25 0 1 8.00 8 3 2 0 3 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TACTGGAAATCCCAATAGTTTGGTA........................................................................................................................... 25 0 1 5.00 5 2 1 0 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTTCCCCTCGGGAGTGCGGAGATGTG.... 26 0 1 4.00 4 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTTCATTGATACTGCAATCTG................................................................................................................................................................................................. 21 0 1 4.00 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0
...............................................................TTTGCTACTTTGGACAAAAGG...................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TATGCGGTAGATGAAACGACTTC...................................................................... 23 0 1 3.00 3 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TATGCGGTAGATGAAACGACTTCAA.................................................................... 25 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCGGGAGTGCGGAGATGTGG... 20 0 1 3.00 3 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................ATTGGTGTTTCCCCTACTGGA............................................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................ATGCGGTAGATGAAACGACTT....................................................................... 21 0 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0
........................................................................TTGGACAAAAGGTTTCATTGGTGTT......................................................................................................................................................... 25 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCCCCTCGGGAGTGCGGAGATGTGGGC. 28 0 1 3.00 3 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0
...................TGTAACGTTTTAATGTATTTCATTGA............................................................................................................................................................................................................. 26 0 1 3.00 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0
........GCTTCGGTTTGTGTAACGTT.............................................................................................................................................................................................................................. 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGCCTATGCGGTAGATGAAACGAC......................................................................... 24 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........GCTTCGGTTTGTGTAACGTTT............................................................................................................................................................................................................................. 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGCCTATGCGGTAGATGAAACGACT........................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TTTGGACAAAAGGTTTCATTGGTGT.......................................................................................................................................................... 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TACTGGAAATCCCAATAGTTTGGTATT......................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................AATTATTTGCTACTTTGGACAAAAG....................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
.........................................................................................................................................................................................................................TGTTTTCCCCTCGGGAGT............... 18 0 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......TGCTTCGGTTTGTGTAACGTTTTAATG........................................................................................................................................................................................................................ 27 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGCAATTATTTGCTACTTTGGACAAA......................................................................................................................................................................... 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TTTGGACAAAAGGTTTCATTGGTGTTTC....................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TTTGTGTAACGTTTTAATGTA...................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CCCTCGGGAGTGCGGAGATGTGGGC. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTCAAAGTTATCCTTTTTGGC.................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTTCTCATTGCTGGGTGGTGA................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GTGTAACGTTTTAATG........................................................................................................................................................................................................................ 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AACGACTTCAAAGTTATCCTT.......................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCGGGAGTGCGGAGATGTGGGT. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TATTCATTTTCTCATTGCTGG........................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTGGTGTTTCCCCTACTGGAAATCCCAA..................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CTCGGGAGTGCGGAGATGTGG... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........TCGGTTTGTGTAACGTTTTAATGTAT..................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CTTTTTGGCAGTTGGTTAC.......................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................TTATTTGCTACTTTGGACAAAAGG...................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................AATGTATTTCATTGATTCTGCAATCTGCAAT............................................................................................................................................................................................. 31 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GCCTATGCGGTAGATGAAACGACTT....................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGCCTATGCGGTAGATGAAACGA.......................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TCATTGATACTGCAATCTGCA............................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGTGTTTTCCCCTCGGGAGTG.............. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCCCCTCGGGAGTGCGGAGATG...... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CCCCTCGGGAGTGCGGAGATGTGGGC. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TCTGCAATTATTTGCTACTTTGGACAAA......................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTTTGGCAGTTGGTTACAACA...................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
TATTTGTTGCTTCGGTTTGTG..................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................ATTCATTTTCTCATTGCT.......................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TACAACAACGAGTGTTTTCCCCTCGGG.................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................TAGATGAAACGACTTCAAAGTTATC............................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TATTCTTTTTGGCAGTTGGTTACAACA...................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......TGCTTCGGTTTGTGTAACGT............................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................TGTTTTCCCCTCGGGAGTGCGG........... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGTTTTCCCCTCGGGAGTGCGGAGATG...... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GTTGGTTACAACAACGAG................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................ATTTTCTCATTGCTGGGTGGT................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTTGGCAGTTGGTTACAACAACGAG................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTTCATTGATTCTGCAATCTGCAAT............................................................................................................................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTTCCCCTCGGGAGTGCGGAGATGTGGG.. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTGGTATTCATTTTCTCATTGCTGGGT...................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GGTAGATGAAACGACTTCAA.................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CTATGCGGTAGATGAAACGAC......................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TTGGACAAAAGGTTTCATTGGAGTTTC....................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................TGGACAAAAGGTTTCATTGGTGTT......................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGCGGTAGATGAAACGACTTCAA.................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......TGCTTCGGTTTGTGTAACGTT.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TATCCTTTTTGGCAGTTGGTTACAACA...................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TCATTGCTGGGTGGTGGTGCC............................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................TATGCGGTAGATGAAACGACTTCAAAGTTA............................................................... 30 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGCGGTAGATGAAACGACTTCAAAG.................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CATTGCTTGGTGGTGATTCC............................................................................................. 20 3 2 1.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
................................................................................................................................................................GCGGTAGATGAAACGACTTCAAAGTTAA.............................................................. 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GAGTGCGGAGATGTGGG.. 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................ATTTCATTGATACTGCAATCT.................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTTTTCCCCTCGGGAGTGCGG........... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
TATTTGTTGCTTCGGTTTGTGTAACGT............................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CCTCGGGAGTGCGGAGATGTGGGC. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGCCTATGCGGTAGATGAAA............................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................GTAGATGAAACGACT........................................................................ 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TTGGACAAAAGGTTTCA................................................................................................................................................................. 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AACGAGTGTTTTCCCCTCGGGAGTGCGGA.......... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TTACAACAACGAGTGTTTTCC......................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCCCCTCGGGAGTGCGGAGATGTG.... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TGTCACTGCTGGGTGGTGCTGC.............................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................TCTGCAATTATTTGCTACTTTGGACAAAA........................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGTTGGTTACAACAACGAG................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................TGCGGTAGATGAAACGACTTCAAAGTT................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCGGGAGTGCGGAGATGTGGGA. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TTATTTGCTACTTTGGACAAAA........................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCAAAGTTATCCTTTTTGGCAGTTGGT............................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..TTTGTTGCTTCGGTTTGTG..................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................TATCCTTTTTGGCAGTTGGTTACAAC....................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGTTTCCCCTCGGGAGTGCGGAGA........ 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGTAACGTTTTAATGTATTTCATTGT............................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................AATTATTTGCTACTTTGGACAAAAGG...................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TGGACAAAAGGTTTCATT............................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TCTGCAATTATTTGCTACTTTGGACAA.......................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGTTACAACAACGAGTGTTTTCCCC....................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CTGGAAATCCCAATAGTTTGG............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......TTGCTTCGGTTTGTGTAACGTTT............................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......TGCTTCGGTTTGTGTAACGTTTTAATGTA...................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TTGCTACTTTGGACAAAAGG...................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......TGCTTCGGTTTGTGTAAC................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................TGCTACTTTGGACAAAAGGTTTCATTGG............................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TTGTTGCTTCGGTTTGTGTA................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGTTTTCCCCTCGGGAGTGCGGAGAA....... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTTTGGCAGTTGGTTACAACAACGAG................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TTCGGTTTGTGTAACGTTTTAATGTA...................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTGGTATTCATTTTCTCATTGCTGGG....................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGCAATTATTTGCTACTTTGGACAA.......................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................TTGGACAAAAGGTTTCATTGGTGTTTC....................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GGGAGTCCGGAGACGTCGGC. 20 3 9 0.56 5 0 0 0 3 0 1 0 0 0 0 0 0 0 1 0
...............CTTGTGTAACGTTTTAAT......................................................................................................................................................................................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTTCTGGGTGGTTGTGCCT............................................................................................ 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................GCCTACGCGGAAGATGTAAC............................................................................ 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GACGAGTATTTTCTCCTCGG................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGGCAGTTGGATAGAGCAACG................................... 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTTCTGGGTGGTGGTGCAT............................................................................................ 19 2 19 0.11 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................CTGGGTGGTGGTGCAT............................................................................................ 16 1 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................CTATAGTTTGGTATT......................................................................................................................... 15 1 20 0.10 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................TGAGGAAGATGATACGACTT....................................................................... 20 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CCCTATTGGAATTCCCA...................................................................................................................................... 17 2 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGTTGGATAGAGCAACGAG................................. 19 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TGCGACGTTGGACAAAA........................................................................................................................................................................ 17 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGTTGGATAGAGCAACGA.................................. 19 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGGGTGGTGGTGCCTGGGC........................................................................................ 19 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTTCTGGGTGGTGGT................................................................................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

##########################################################################################################################################################################################################################################################
ATAAACAACGAAGCCAAACACATTGCAAAATTACATAAAGTAACTATGACGTTAGACGTTAATAAACGATGAAACCTGTTTTCCAAAGTAACCACAAAGGGGATGACCTTTAGGGTTATCAAACCATAAGTAAAAGAGTAACGACCCACCACCACGGATACGCCATCTACTTTGCTGAAGTTTCAATAGGAAAAACCGTCAACCAATGTTGTTGCTCACAAAAGGGGAGCCCTCACGCCTCTACACCCGA
***************************************************************((((((......((((((((((.((((((......)))))).)))).................(((.(((((((((((....)))))).))))))))))))))...))))))....*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 O002
Head
 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................................................................................TTGCTGAAGTTTCAATAGGAA.......................................................... 21 0 1 8.00 8 5 3 0 0 0 0 0 0 0 0
.................................................................................................AGGGGATGACCTTTAGGGTTA.................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGCTGAAGTTTCAATAGGAAA......................................................... 21 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTGCTGAAGTTTCAATAGGAAAAACCGT................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.....................................................AGACGTTAATAAACGATGAAACCTGTTTT........................................................................................................................................................................ 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTGCTGAAGTTTCAATAGGAAA......................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................ACGCCATCTACTTTGCTGAAGTTT................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CCACCACCACGGATACGCCATCTACT............................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................AGGGGATGACCTTTAGGGTTAT................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................TAATAAACGATGAAACCTGTTTC........................................................................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................TATGACGTTAGACGTTAATAA......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................AAAGTAACTAAGACGTTAGACGTTAAT........................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............GCCAAACACATTGCAAAATTA......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................AGGGTTATCAAACCATAAGTAAAAGAGT............................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................ACCATAAGTAAAAGAGTA.............................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................AGGAAAAACCGTCAACCAATGTTGTTGC................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TGAAGTTTCAATAGGAAAA........................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................AGGAAAAACCGTCAACCAATG.......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................ACACATTGCAAAATTACATAAAGTAACTAA........................................................................................................................................................................................................... 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................TGCAAAATTACATAAAGTAAC.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................ATACGCCATCTACTTTGCTGAAGT..................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................AGTTTCAATAGGAAAAACCGTCAACCA............................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TTAGGGTTATCAAACCATAAGTAAA.................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
................................................................................................AAGGGGATGACCTTTAGGGTT..................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................TGCTGAAGTTTCAATAGGAAAA........................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....ACAACGAAGCCAAACACATT.................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................AGACGTTAATAAACGATGAAACCTGTT.......................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................TACATAAAGTAACTAAGACGTTAGACGTT.............................................................................................................................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CACGGATACGCCATCTACTTT............................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................CGTTAGACGTTAATAAACGATG................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................GGGTTATCAAACCATAAGTAA..................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................ACGTTAGACGTTAATAAACG...................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................TAGGAAAAACCGTCAACCAAT........................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................ACCACAAAGGGGATTA................................................................................................................................................ 16 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................CGGAAGTTTCAATAGCAAA......................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................................GGTAGTCAAACCAGAAGTAAA.................................................................................................................... 21 3 8 0.25 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GGGAGCACTCACGCC........... 15 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................CTGAAGTTTCAAGAGTAAA......................................................... 19 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................GAAGTTTCAATAGTAAA......................................................... 17 1 8 0.13 1 0 0 0 0 0 0 0 0 1 0
.............................................................................................ACCAAGGGTATGACCCTTAG......................................................................................................................................... 20 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................ATGACCTTTAGTCTTAT................................................................................................................................... 17 2 20 0.10 2 0 0 0 0 0 0 0 0 2 0
...............................................................................................................................................................................................................................GGGGCGCCCTCAGGCC........... 16 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................GCGGAGCCCTCACGCTT.......... 17 2 14 0.07 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................CAATAGGAATAACCG.................................................... 15 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................CCGGAAGTTTCAATAGTAAA......................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................CGGAAGTTTCAACAGCAAAA........................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:8048862-8049111 + dsi_7583 TAT-------TTG-----TTGCTTC----GGT---------TTGTGTAACGTT--------------------------------------TTA-A----T---GTATTTCATTGATAC--------------------------------------TGCAATCTGCAAT--------TATTTGCTACTTTGGACAAA-AGGTTT---CATT-GGTG----TTTCCCCTACT-------G-GAAATCCCAATAGTTTGGT--ATTCATTTT--CTCATTGC--TGGG-TGG--------------------TGGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCAAAG-TTATCC-------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T-----T----CCCC----------------TCGGG-AGTG-----CGG-AGATGTGGGC------T
droSec2 scaffold_3:3817458-3817707 + TAT-------TTG-----TTGCTTC----GGT---------TTGTGTAACGTT--------------------------------------TTA-A----T---GTATTTCATTGATTC--------------------------------------TGCAATCTGCAAT--------TATTTGCTACTTTGGACAAA-AGGTTT---CATT-GGTG----TTTCCCCTACT-------G-GAAATCCCAATAGTTTGGT--ATTCATTTT--CTCATTGC--TGGG-TGG--------------------TGGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCAAAG-TTATCC-------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T-----T----CCCC----------------TCGGG-AGTG-----CGG-AGATGTGGGC------T
dm3 chr2L:8321417-8321674 + TAT-------TTG-----TTGCTTC----GGT---------TTGTGTAACGTT--------------------------------------TTA-A----T---GTATTTCTTTGATTC--------------------------------------TGCAATCTGCAAT--------TATTTGCTACTTTGGACAAAAAGGTTT---CATT-AGGTT-TCATTACCCTACT-------G-GTTATCCCAATAGTTTGGTATATTCATTTT--CTCATTGC--TGGGATGG--------------------TGGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCAAAG-TTATCC-------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TT----CCCC----------------TTGGG-AGTG-----CGG-AGATGTGGGC------T
droEre2 scaffold_4929:17231023-17231263 + TAT-------TTG-----TTGCTTT----GGT---------TTCTGTAACGTT--------------------------------------TTA-A----T---GTATTCCTTTGATTC--------------------------------------TGCA-ACCGCAAT--------TAT-TGCTACTTTGGACAAA-AGGTTT---CATT-GGTG----TTTCCCCTACA-------G-GATATCGCAAATATTTGGT--ATTCATTTT--CTCATTGC--TGGG------------------------TGGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCAAAG-ATTTCC-------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TT----TCCC----------------TTGGG-AGTG-----CGG-AGATGT-----------
droYak3 2L:10959179-10959426 + TAT-------TTGTTG--TTGCTTT----GGT---------TTCTGTAACGTT--------------------------------------TTA-A----T---GTATTTCCTTGATTC--------------------------------------TGCA-TCTGCAAT--------TAT-TGCTACGTTGGACAAA-AGGTTT---CATT-GGTGT-TGTTTCCTCTACA-------G-GATATCGCAAATATTTCGT--ATTCATTTG--CTCATTGC--TGGG------------------------TGGTG-------------------------------------------------------------CCTATGCGGTAAGATG-------------------AAACGACT-TTAAAG-TTTTCCT------------------------------TATTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T-----T----CCCC----------------TGGGG-AGTG-----CGG-AGATAT-----------
droEug1 scf7180000409461:334614-334861 + TAT-------TTG-----TTGCTTT----GGT---------TTCTGTAACGTT--------------------------------------TTA-A----TTTTGTATTTTTTGGTTTT--------------------------------------TGCA-TTTGCGTT--------TAT-TGCTACGTTGGACAAA-AGGTTT---CATTTGGTG----TTTCCTCTACT-------G-GATGTACCATAAATTTGGC--G-------T--CTCCTTGC--TGGG-TTG--------------------TAGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGTTT-TCAAAA-TTTTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TT----CCCC----------------TTGGG-AGTG-----CGGTAGATATGGGC------T
droBia1 scf7180000301500:332203-332439 - TAC-------GTG-----TTGCTTT----GGT---------TTCTGTAACATT--------------------------------------ATA-A----T---GTTTTACTTGGTATC--------------------------------------TGCA-TCTGCATT--------TAC-GGCTACGTTGGACAAA-AGGATT---CATT-GGTGT---TTTCATCTAGT-------G-GATATCCCACAAACTGGGC--G-------T--CTCCTTGC--TGGG------------------------TGGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCAAAG-TTCTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TT----CCCC----------------TCGGG-AGTG-----CGGTAGATAT-----------
droTak1 scf7180000415629:12587-12823 + TAT-------TTG-----TTGCTTT----GGT--------TTTGTGTAAGGAT--------------------------------------TTT-A----T---ATTTTACTTGGTATC--------------------------------------TGCG-TCTGCATG--------TAT-CGCTACGTTGGACAAA-AGGTTT---CACT-GGTG----TTTCCTCTAAT-------G-GATCTCCCATAAATTTGGT--G-------T--CTCCTTGC--TGGG------------------------TGGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCAAAG-TTTTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TT----CCCC----------------TTGGG-AGTG-----CGGTAGATAT-----------
droEle1 scf7180000491338:567571-567826 - TAT-------TTG-----TTGCTTT----GGT---------TTCTGTAACGTG--------------------------------------TTAAA----T---GTTTTACTTGGTATCTGCATC--------------------------------TGCA-TCTGCATT--------TAT-TGCTACGTTGGACAAA-AGGTTT---CATTTGGTG----TTTCCTCTACTCAAATATGAGATATCCCATAGATGTGGT--G-------T--ATCCTTGC--TGGG------------------------TGTTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGATT-TCAAAG-TTTTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TTTTAATCCC----------------TTGGG-AGTG-----CGATAGATAT-----------
droRho1 scf7180000780102:195145-195383 - TAT-------TTT-----TTGCTTT----GGT---------TTCTGTAACGTT--------------------------------------TTA-A----T---GTTTTACTTGGTATC--------------------------------------TGCA-TCTGCAAT--------TAT-TGCTACGTTGGACAAA-AGGTTT---CATT-GGTG----TTTCCTCTACT-------G-GATATCCCATAAATTTGGT--G-------T--CTCCTTGC--TGGG------------------------TGGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGATT-TCAAAG-TTTTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TTTTC-CCCC----------------TTGGG-AGTG-----CGGTTGATAT-----------
droFic1 scf7180000453925:1021519-1021753 + TAT-------TTG-----TTGCTTT----GGT---------TTCTGTAACATT--------------------------------------TTA-A----T----TTTTACTTGGTTTC--------------------------------------TGCA-CCTGCATT--------TAT-TGCTAAGTTGGACAAA-AGGTTT---TACT-GGTG----T-TCCTCTACTT------G-GATATCCCATAAACTTGGT--G-------T--CTCTTTGC--TGGG------------------------TTGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCAAAG-TTTTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TT----CCCC----------------TTGGG-AGTG-----CGGTAGATAT-----------
droKik1 scf7180000302570:554766-555066 + TAC-------TCGGGGTTTCGCTTTGGTTTGT----TTTTTTTGTGTAACGTT--------------------------------------T-A-T----T---GTTTATTAT----TA-TAAATCGGTTTTCGGTTTTTGGTTTTCGGTT------TGCA-ATTGCATTGTTTTTTTTATAGACTACGATGGACAAACATGGTT---CAGT-GGTTAGTGTTTCCTCTACG-------G-GTA-------------------------------------------------------------------TGTTG--------------------CCTGCTACGCTCGTTCTTCCAGGTTTCCGT----------------------------------------------------------------TTCCG------TTTCCCTTTTCCTTATTTTTTTTTGTTTTGGCAGTTGGTTTTCAACAACAACAACAACGAGTGTG-TGTGTTT----CCCT----------------TGGGG-AGTGTGTG-CAGTAGAGAT-----------
droAna3 scaffold_12916:5943088-5943286 - TAT-------TTC-----TTGCTTT----GGT---------TTCTGTAACTT----------------------------------------------------------------------------------------------------------------------------------TGCTACGATGGACAAA-ACGA-G---CATT-GGTG----TTTCCTCAGCG-------G-GA-----------CTTGGT--A-------TCTCTCTTAGC--TT-----------------------------------------TGGT--------------------------------------------------------T-TGGTG-------------------AATTG-CT-TCAAAGGTTTTCCATTTACTT----TTTTTGGT-------TTTTTTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T-----T-----CAC----------------TTGGG-AGTG-----CAGTAGATGTGGGC-------
droBip1 scf7180000396568:900204-900398 + TAT-------TTC-----TTGCTTT----GGT---------TTCTGTAACAT----------------------------------------------------------------------------------------------------------------------------------TGCTACGATGGACAAA-AAGA-G---CATT-GGTG----TTTCCTCTGGG-------G-GA-----------TTTGGT--A-------T--CTCCTAGC--TTGG------------------------T--------------------------------------------------------------------------T-TGGTG-------------------AAATTGCT-TCAAAGGGATTCCATTTTCATTTATTTTTTGGT---------TTCTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T-----T-----CAC----------------TTGGG-AGTG-----CAGTAGATGT-----------
dp5 4_group3:7908058-7908419 + TAT-------TTG-----TTGCTTTGGTTGGT---------TTCTGTAACGTT--------------------------------------TAACATACAT---TTATTTTAT--TATTTTTATT--------------------------------TTC---TTGCATT--------TAT-CTCTACAATGGACAAA-ACTTTTGCACATT-TGCAT-TCGTTCTACTACTTGGATGTG-GATGACCCATAATGTTGGTTC---CTTTT--------TTATGTGGGAT-GTGGGGATGCCTTTAGCCGGGAGGTGGCTCCATTGTGGGTTTGGTGTCGGT-------GTCCTCCTATTCCTCCTCC---TCCTCCTCCTATGCGGT-AGATG-------------------AATCGATTCTCAAAG-TTTTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-TTTAT--------T-TTCTTT-TTTTCGTTTTGGGG-AGTG-----CTTTAGATGGGGGCGTGGTTT
droPer2 scaffold_1:9355405-9355770 + TAT-------TTG-----TTGCTTTGGTTGGT---------TTCTGTAACGTT--------------------------------------TAACATACAT---TTATTTTAT--TATTTTTATT--------------------------------TTC---TTGCATT--------TAT-CTCTACAATGGACAAA-ACTTTTGCACATT-TGCAT-TCGTTCTACTACTTGGATGTG-GATGTCCCATAATGTTGGTTC---CTTTT--------TTATGTGGGAT-GTGGGGATGCCTTTAGCCGGGAGGTGGCTCCATTGTGGGTTTGGTGTCGGT-------GTCCTCCTATTCCTCCTCCTGCTCCTCCTCCTATGTGGT-AGATG-------------------AATCGATTCTCAAAG-TTTTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-TTTAT--------T-TTCTTTTTTTTCGTTTTGGGG-AGTG-----CGTTAGATGGGGGCGTGGTTT
droWil2 scf2_1100000004585:7117093-7117299 + TAT-------GTA-----TGT---A----TGTTTGTTTGTTGTGTGTATGTATTTTGTGGAGTTGTGCTCCATTAATGTCTAT--ATGGTGTCTAT--------------------------------------------------TGATTTGCTAA---------------------------------------------------------TTG----TCTAGTTTAAG-------G-GATACCATTTGAAT-AGGT--G-------C--CAGGTTCC-----------------------------------------------------------------------------------------------------------AGGTT-------------------TATCTTTC-ACAATG-ATCTCT----------------------------CTCTCTTTGGCAGTTGG---------------------AGTGCA-T----TTTAG-ATAT----------------ATGGGTATGT-----CGGGGGAAAT-----------
droVir3 scaffold_12963:16079994-16080052 + TAATTTTTTTTTA-----TGGCTCT----GGT---------TTCTATAACGAT--------------------------------------TCT------T---GTGT----TTAATTC--------------------------------------TACAGCCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:5537256-5537258 + TGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:13514954-13515160 + TTT-------GTG-----GCTTTTT----GGT---------TTCTACTACGTT-----------TTTTTTCA-CAGTGTTTCCATAT---GGCTAT--------------------------------------------------CTCTTTCACAC-------------------------TGCT---------------------------------------------------------------------------------------CCAGTTGC--CGAG------------------------CTGTT-----------------------------------------------------------CTTCTGTGCGTT-AGATTATGGTTTGTTTCATATTCAAAACGATT-TCATAT-TTTG--T------------------------------TTTTTGGCAGTTGGTT----------ACAACGA---GTGAGTTTTA-T-------T-TTTTTT----------TTTTC-AGTATTTTTCTG------TGTTT------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAT-------TTG-----TTGCTTC----GGT---------TTGTGTAACGTT--------------------------------------TTA-A----T---GTATTTCATTGATAC--------------------------------------TGCAATCTGCAAT--------TATTTGCTACTTTGGACAAA-AGGTTT---CATT-GGTG----TTTCCCCTACT-------G-GAAATCCCAATAGTTTGGT--ATTCATTTT--CTCATTGC--TGGG-TGG--------------------TGGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCAAAG-TTATCC-------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T-----T----CCCC----------------TCGGG-AGTG-----CGG-AGATGTGGGC------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................TTTGGACAAA-AGGTTT---CATT-GGTG----TT...............................................................................................................................................................................................................................................................................................................................................................26114.0014000000102100010000
.............................................................................................................................................................................................................................................................................................................................................................................................TGCGGT-AGATG-------------------AAACGACT-TCAAAG-TTA...............................................................................................................................................2819.00901000002000033000
...........................................................................................................................................................................................................................................................................................................................................................................................TATGCGGT-AGATG-------------------AAACGACT-TCAAAG-T.................................................................................................................................................2818.00800000021101003000
.............................................................................................................................................................................................................................................................................................................................................................................................TGCGGT-AGATG-------------------AAACGACT-TCAAAG-T.................................................................................................................................................2618.00800010020001031000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT-T-----T----CCCC----------------TCGGG-AGTG-----CGG-AGA..............2518.00800000033002000000
....................................................................................................................................................................................................................................TACT-------G-GAAATCCCAATAGTTTGGT--A.......................................................................................................................................................................................................................................................................................................................2515.00500010021001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-T-----T----CCCC----------------TCGGG-AGTG-----CGG-AGATGTG..........2614.00400000000002020000
...........................................................................................................TTTCATTGATAC--------------------------------------TGCAATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................2114.00440000000000000000
....................................................................................................................................................................................TTTGCTACTTTGGACAAA-AGG....................................................................................................................................................................................................................................................................................................................................................................................2113.00300000030000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TATGCGGT-AGATG-------------------AAACGACT-TC.......................................................................................................................................................2313.00300000000000012000
...........................................................................................................................................................................................................................................................................................................................................................................................TATGCGGT-AGATG-------------------AAACGACT-TCAA.....................................................................................................................................................2513.00300000000000030000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG-AGTG-----CGG-AGATGTGG.........2013.00300000000000021000
.................................................................................................................................................................................................................ATT-GGTG----TTTCCCCTACT-------G-GA...........................................................................................................................................................................................................................................................................................................................................2113.00300000030000000000
............................................................................................................................................................................................................................................................................................................................................................................................ATGCGGT-AGATG-------------------AAACGACT-T........................................................................................................................................................2113.00300000000000003000
.............................................................................................................................................................................................TTGGACAAA-AGGTTT---CATT-GGTG----TT...............................................................................................................................................................................................................................................................................................................................................................2513.00300000020000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----T----CCCC----------------TCGGG-AGTG-----CGG-AGATGTGGGC------.2813.00300000001001010000
............................................TGTAACGTT--------------------------------------TTA-A----T---GTATTTCATTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00300000012000000000
....................GCTTC----GGT---------TTGTGTAACGTT--------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000010001000000
..........................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGAC...........................................................................................................................................................2412.00200000011000000000
....................GCTTC----GGT---------TTGTGTAACGTT--------------------------------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000010001000000
..........................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-.........................................................................................................................................................2512.00200000020000000000
............................................................................................................................................................................................TTTGGACAAA-AGGTTT---CATT-GGTG----T................................................................................................................................................................................................................................................................................................................................................................2512.00200000002000000000
....................................................................................................................................................................................................................................TACT-------G-GAAATCCCAATAGTTTGGT--ATT.....................................................................................................................................................................................................................................................................................................................2712.00200000020000000000
.......................................................................................................................................................................AAT--------TATTTGCTACTTTGGACAAA-AG.....................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT-T-----T----CCCC----------------TCGGG-AGT...........................1812.00200001000001000000
...................TGCTTC----GGT---------TTGTGTAACGTT--------------------------------------TTA-A----T---G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000011000000000
....................................................................................................................................................................TGCAAT--------TATTTGCTACTTTGGACAAA-.......................................................................................................................................................................................................................................................................................................................................................................................2612.00200000010000010000
............................................................................................................................................................................................TTTGGACAAA-AGGTTT---CATT-GGTG----TTTC.............................................................................................................................................................................................................................................................................................................................................................2812.00200000020000000000
...............................T---------TTGTGTAACGTT--------------------------------------TTA-A----T---GTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCC----------------TCGGG-AGTG-----CGG-AGATGTGGGC------.2511.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCAAAG-TTATCC-------------------------------TTTTTGGC.....................................................................................................2111.00100000010000000000
............................................................................................................................................................................................................................................................................TTT--CTCATTGC--TGGG-TGG--------------------TGA....................................................................................................................................................................................................................................................................2111.00100000010000000000
...........................................GTGTAACGTT--------------------------------------TTA-A----T---G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AACGACT-TCAAAG-TTATCC-------------------------------TT...........................................................................................................2111.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG-AGTG-----CGG-AGATGTGGGT------.2211.00100000000000010000
...................................................................................................................................................................................................................................................................T--ATTCATTTT--CTCATTGC--TGG................................................................................................................................................................................................................................................................................................2111.00100000010000000000
..................................................................................................................................................................................................................TT-GGTG----TTTCCCCTACT-------G-GAAATCCCAA...................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------TCGGG-AGTG-----CGG-AGATGTGG.........2111.00100000000001000000
.......................TC----GGT---------TTGTGTAACGTT--------------------------------------TTA-A----T---GTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------TTTTTGGCAGTTGGTT----------AC.................................................................................1911.00110000000000000000
.........................................................................................................................................................................T--------TATTTGCTACTTTGGACAAA-AGG....................................................................................................................................................................................................................................................................................................................................................................................2411.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................G-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-T........................................................................................................................................................2511.00100000000000001000
..........................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGA............................................................................................................................................................2311.00100000010000000000
.............................................................................................................TCATTGATAC--------------------------------------TGCAATCTGCA......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTT-T-----T----CCCC----------------TCGGG-AGTG-----.....................2111.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----T----CCCC----------------TCGGG-AGTG-----CGG-AGATG............2311.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCC----------------TCGGG-AGTG-----CGG-AGATGTGGGC------.2611.00100000000001000000
..................................................................................................................................................................TCTGCAAT--------TATTTGCTACTTTGGACAAA-.......................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGCAGTTGGTT----------ACAACA.............................................................................2111.00100000000001000000
TAT-------TTG-----TTGCTTC----GGT---------TTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
......................................................................................................................................................................................................................................................................ATTCATTTT--CTCATTGC--T..................................................................................................................................................................................................................................................................................................1811.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------ACAACAACGAGTGTT-T-----T----CCCC----------------TCGGG-..............................2711.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................T-AGATG-------------------AAACGACT-TCAAAG-TTATC.............................................................................................................................................2511.00100000000000010000
...................TGCTTC----GGT---------TTGTGTAACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT-T-----T----CCCC----------------TCGGG-AGTG-----CGG-.................2211.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT-T-----T----CCCC----------------TCGGG-AGTG-----CGG-AGATG............2711.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTT----------ACAACAACGAG........................................................................1811.00100000000001000000
..........................................................................................................................................................................................................................................................................ATTTT--CTCATTGC--TGGG-TGG--------------------T......................................................................................................................................................................................................................................................................2111.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCAGTTGGTT----------ACAACAACGAG........................................................................2511.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-T-----T----CCCC----------------TCGGG-AGTG-----CGG-AGATGTGGG........2811.00100000000001000000
...............................................................................................................................................................................................................................................................TTGGT--ATTCATTTT--CTCATTGC--TGGG-T.............................................................................................................................................................................................................................................................................................2711.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................GGT-AGATG-------------------AAACGACT-TCAA.....................................................................................................................................................2011.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................CTATGCGGT-AGATG-------------------AAACGAC...........................................................................................................................................................2111.00100000010000000000
..............................................................................................................................................................................................TGGACAAA-AGGTTT---CATT-GGTG----TT...............................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TGCGGT-AGATG-------------------AAACGACT-TCAA.....................................................................................................................................................2311.00100000000000010000
...................TGCTTC----GGT---------TTGTGTAACGTT--------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATCC-------------------------------TTTTTGGCAGTTGGTT----------ACAACA.............................................................................2711.00100000001000000000
..................................................................................................................................................................................................................................................................................TCATTGC--TGGG-TGG--------------------TGGTG-------------------------------------------------------------CC...................................................................................................................................................................................................2111.00100000100000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TATGCGGT-AGATG-------------------AAACGACT-TCAAAG-TTA...............................................................................................................................................3011.00100000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................TGCGGT-AGATG-------------------AAACGACT-TCAAAG-..................................................................................................................................................2511.00100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................GCGGT-AGATG-------------------AAACGACT-TCAAAG-TTAA..............................................................................................................................................2811.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AGTG-----CGG-AGATGTGGG........1711.00100000000001000000
..........................................................................................................ATTTCATTGATAC--------------------------------------TGCAATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-T-----T----CCCC----------------TCGGG-AGTG-----CGG-.................2111.00100000000001000000
TAT-------TTG-----TTGCTTC----GGT---------TTGTGTAACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC----------------TCGGG-AGTG-----CGG-AGATGTGGGC------.2411.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAA...............................................................................................................................................................2011.00100001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GT-AGATG-------------------AAACGACT-.........................................................................................................................................................1511.00100000000001000000
.............................................................................................................................................................................................TTGGACAAA-AGGTTT---CA............................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGTGTT-T-----T----CCCC----------------TCGGG-AGTG-----CGG-A................2911.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------ACAACAACGAGTGTT-T-----T----CC......................................................2111.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----T----CCCC----------------TCGGG-AGTG-----CGG-AGATGTG..........2511.00100000000001000000
..................................................................................................................................................................TCTGCAAT--------TATTTGCTACTTTGGACAAA-A......................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTGGTT----------ACAACAACGAG........................................................................2011.00100001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TGCGGT-AGATG-------------------AAACGACT-TCAAAG-TT................................................................................................................................................2711.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGG-AGTG-----CGG-AGATGTGGGA------.2211.00100000000000010000
.........................................................................................................................................................................T--------TATTTGCTACTTTGGACAAA-A......................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAG-TTATCC-------------------------------TTTTTGGCAGTTGGT..............................................................................................2711.00100000000000010000
..T-------TTG-----TTGCTTC----GGT---------TTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATCC-------------------------------TTTTTGGCAGTTGGTT----------ACAAC..............................................................................2611.00100000010000000000
............................................TGTAACGTT--------------------------------------TTA-A----T---GTATTTCATTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.......................................................................................................................................................................AAT--------TATTTGCTACTTTGGACAAA-AGG....................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
..............................................................................................................................................................................................TGGACAAA-AGGTTT---CATT-.........................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
..................................................................................................................................................................TCTGCAAT--------TATTTGCTACTTTGGACAA.........................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTT----------ACAACAACGAGTGTT-T-----T----CCCC----------------....................................2611.00100000000001000000
......................................................................................................................................................................................................................................CT-------G-GAAATCCCAATAGTTTGG...........................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..................TTGCTTC----GGT---------TTGTGTAACGTT--------------------------------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
...................TGCTTC----GGT---------TTGTGTAACGTT--------------------------------------TTA-A----T---GTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
.....................................................................................................................................................................................TTGCTACTTTGGACAAA-AGG....................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...................TGCTTC----GGT---------TTGTGTAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
......................................................................................................................................................................................TGCTACTTTGGACAAA-AGGTTT---CATT-GG.......................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
..........TTG-----TTGCTTC----GGT---------TTGTGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT-T-----T----CCCC----------------TCGGG-AGTG-----CGG-AGAA.............2611.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGGCAGTTGGTT----------ACAACAACGAG........................................................................2711.00100000010000000000
......................TTC----GGT---------TTGTGTAACGTT--------------------------------------TTA-A----T---GTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
...............................................................................................................................................................................................................................................................TTGGT--ATTCATTTT--CTCATTGC--TGGG-..............................................................................................................................................................................................................................................................................................2611.00100000001000000000
....................................................................................................................................................................TGCAAT--------TATTTGCTACTTTGGACAA.........................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
.............................................................................................................................................................................................TTGGACAAA-AGGTTT---CATT-GGTG----TTTC.............................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
droSec2
TAT-------TTG-----TTGCTTC----GGT---------TTGTGTAACGTT--------------------------------------TTA-A----T---GTATTTCATTGATTC--------------------------------------TGCAATCTGCAAT--------TATTTGCTACTTTGGACAAA-AGGTTT---CATT-GGTG----TTTCCCCTACT-------G-GAAATCCCAATAGTTTGGT--ATTCATTTT--CTCATTGC--TGGG-TGG--------------------TGGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCAAAG-TTATCC-------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T-----T----CCCC----------------TCGGG-AGTG-----CGG-AGATGTGGGC------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................ATAGTTTGGT--ATTCATTTT--CT...........................................................................................................................................................................................................................................................................................................2111.0010100
....................................................T--------------------------------------TTA-A----T---GTATTTCATTGATTC--------------------------------------TGCAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
dm3
TAT-------TTG-----TTGCTTC----GGT---------TTGTGTAACGTT--------------------------------------TTA-A----T---GTATTTCTTTGATTC--------------------------------------TGCAATCTGCAAT--------TATTTGCTACTTTGGACAAAAAGGTTT---CATT-AGGTT-TCATTACCCTACT-------G-GTTATCCCAATAGTTTGGTATATTCATTTT--CTCATTGC--TGGGATGG--------------------TGGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCAAAG-TTATCC-------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TT----CCCC----------------TTGGG-AGTG-----CGG-AGATGTGGGC------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-.........................................................................................................................................................25135.003500000000000000000000000000000000000000000000000010000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000200000000000600001000000000000000000000000000000000000000000000000000000000000000000000000000000000300002210000000000000001111100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT-T----TT----CCCC----------------TTGGG-AGTG-----CGG-AGA..............26129.002900000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000003300000000000000000000000000000000000000000000000000000000000000000000001001000300000100010000000000000001400000
...........................................................................................................................................................................................................................................................................................................................................................................................TATGCGGT-AGATG-------------------AAACGACT-TCAAAG-T.................................................................................................................................................28120.002000000000000000000000000000000000000000000000000200000000000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000011000000
..................................................................................................................................................................................TATTTGCTACTTTGGACAAAAAGGT...................................................................................................................................................................................................................................................................................................................................................................................25116.00160000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000200000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000200010000030000000000000000000400000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT-T----TT----CCCC----------------TTGGG-AGTG-----CGG-A................24115.00150000000000000000000001000000000000000000000100000001000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010010000100000000000000000000500000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-T----TT----CCCC----------------TTGGG-AGTG-----CGG-AGATG............26113.00130000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----CCCC----------------TTGGG-AGTG-----CGG-AGATGTGGGC------.27112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000080000011000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TGCGGT-AGATG-------------------AAACGACT-TCAAAG-T.................................................................................................................................................26111.00110000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100500000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCC----------------TTGGG-AGTG-----CGG-AGATGTGGGC------.26110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000010000000000000000000000000000000000000000000000000000000000000000000000020000000010000000000000000000000
.................................................................................................................................................................................................................................................................................CTCATTGC--TGGGATGG--------------------TGGTG-------------------------------------------------------------.....................................................................................................................................................................................................21110.00100000000000000000000001000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000040000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------ACAACAACGAGTGTT-T----TT----CCCC----------------TTG.................................2619.0090000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000001000000010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000100000
.............................................................................................................................................................................................................................................................................TT--CTCATTGC--TGGGATGG--------------------TGGTG-------------------------------------------------------------C....................................................................................................................................................................................................2417.0070000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000030000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-T----TT----CCCC----------------TTGGG-AGTG-----CGG-AGATGTG..........2817.0070000000000000000000000000000000000000000000000010100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000200000
............................................................................................................................................................................................................................................................................................................................................................................................ATGCGGT-AGATG-------------------AAACGACT-TCAAAG-T.................................................................................................................................................2717.0070000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100300000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----CCCC----------------TTGGG-AGTG-----CGG-AGATGTGGGC------.2817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000030000000010000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGTGTT-T----TT----CCCC----------------TTGGG-AGTG-----C....................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000500000
..T-------TTG-----TTGCTTC----GGT---------TTGTGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500020000000000000000000000000000000000000000000000000000
............G-----TTGCTTC----GGT---------TTGTGTAACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200010000000000000001100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAG-TTATCC-------------------------------TTTTTGGCAGTTGGT..............................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000
...........................................................................................................................................................................................................................................................................................................................................................................................TATGCGGT-AGATG-------------------AAACGACT-TCAAAG-..................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000100000000000000000000000000011110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................TCATTGC--TGGGATGG--------------------TGGTG-------------------------------------------------------------C....................................................................................................................................................................................................2116.0060000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----CCCC----------------TTGGG-AGTG-----CGG-AGATGTG..........2516.0060000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000000000000000000000000000000000020000000000000000000000000100000
..................................................................................................................................................................................................................................................................................TCATTGC--TGGGATGG--------------------TGGTG-------------------------------------------------------------CCTAAA...............................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGGCAGTTGGTT----------ACAACAACGAG........................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-T----TT----CCCC----------------TTGGG-AGTG-----CGG-AGATGTG..........2715.0050000000000000000000000100000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000
..................................................................................................................................................................................................................................................................................TCATTGC--TGGGATGG--------------------TGGTG-------------------------------------------------------------CCTA.................................................................................................................................................................................................2415.0050000000000000000000001000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC----------------TTGGG-AGTG-----CGG-AGATGTGGGC------.2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CTCATTGC--TGGGATGG--------------------TGGTG-------------------------------------------------------------CCTA.................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TTTGGACAAAAAGGTTT---CATT-AGGTT-...................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCC----------------TTGGG-AGTG-----CGG-AGATGTGGGC------.2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000030000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TT----CCCC----------------TTGGG-AGTG-----CGG-AGATGTG..........2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000200000
....................................................................................................................................................................................TTTGCTACTTTGGACAAAAAGGT...................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..T-------TTG-----TTGCTTC----GGT---------TTGTGTAACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.........................................................................................................................................................................T--------TATTTGCTACTTTGGACAAAAAGGT...................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
...................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCAAAG-TTATCC-------------------------------TTTTTGGCAGTTGGT..............................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000200000
............................................................................................................................................................................................................................................................................TTT--CTCATTGC--TGGGATGG--------------------TGGT...................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000200000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TTGGTATATTCATTTT--CTCATTGC--TGG................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGTT-T----TT----CCCC----------------TTGGG-AGTG-----C....................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................CAATAGTTTGGTATATTCATTTT--C............................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................T--CTCATTGC--TGGGATGG--------------------TGGT...................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000
..........................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGAC...........................................................................................................................................................2413.0030000000000000000000000000000000000000010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-T----TT----CCCC----------------TTGGG-AGTG-----CGG-AGA..............2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-T----TT----CCCC----------------TTGGG-AGTG-----CGG-AGA..............2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................G-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TC.......................................................................................................................................................2613.0030000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........TG-----TTGCTTC----GGT---------TTGTGTAACGTT--------------------------------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
.............................................................................................................................................................................................................................................................................TT--CTCATTGC--TGGGATGG--------------------TGGTG-------------------------------------------------------------CCTA.................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGCAGTTGGTT----------ACAACAACGAG........................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------ACAACAACGAGTGTT-T----TT----CCCC----------------TTGGG-..............................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCC-------------------------------TTTTTGGCAGTTGGT..............................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TATGCGGT-AGATG-------------------AAACGACT-.........................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAG-TTATCC-------------------------------TTTTTGGCAGTTGGT..............................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCAGTTGGTT----------ACAACAACGAG........................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTGCTACTTTGGACAAAAAGGTTT---..............................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TTGGACAAAAAGGTTT---CATT-AGGTT-...................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................TGC--TGGGATGG--------------------TGGTG-------------------------------------------------------------CCTATGCGG............................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTCATTTT--CTCATTGC--TGGGATGG--------------------T......................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TTGC--TGGGATGG--------------------TGGTG-------------------------------------------------------------CCTATGCGG............................................................................................................................................................................................2613.0030000000000000000000000010000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCAGTTGGTT----------ACAACAACGAGTG......................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGG-AGTG-----CGG-AGATGTGGA........2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-T----TT----CCCC----------------TTGGG-AGTG-----CGG-AGATGT...........2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAG-TTATCC-------------------------------TTTTTGGCAG...................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................G-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCA......................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................TGGTATATTCATTTT--CTCATTGC--TGG................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TATGCGGT-AGATG-------------------AAACGAC...........................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCC-------------------------------TTTTTGGCAGTT.................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................TTGC--TGGGATGG--------------------TGGTG-------------------------------------------------------------CCT..................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................ATGCGGT-AGATG-------------------AAACGACT-TCAAA....................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droEre2
TAT-------TTG-----TTGCTTT----GGT---------TTCTGTAACGTT--------------------------------------TTA-A----T---GTATTCCTTTGATTC--------------------------------------TGCA-ACCGCAAT--------TAT-TGCTACTTTGGACAAA-AGGTTT---CATT-GGTG----TTTCCCCTACA-------G-GATATCGCAAATATTTGGT--ATTCATTTT--CTCATTGC--TGGG------------------------TGGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCAAAG-ATTTCC-------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TT----TCCC----------------TTGGG-AGTG-----CGG-AGATGT-----------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TAT-------TTGTTG--TTGCTTT----GGT---------TTCTGTAACGTT--------------------------------------TTA-A----T---GTATTTCCTTGATTC--------------------------------------TGCA-TCTGCAAT--------TAT-TGCTACGTTGGACAAA-AGGTTT---CATT-GGTGT-TGTTTCCTCTACA-------G-GATATCGCAAATATTTCGT--ATTCATTTG--CTCATTGC--TGGG------------------------TGGTG-------------------------------------------------------------CCTATGCGGTAAGATG-------------------AAACGACT-TTAAAG-TTTTCCT------------------------------TATTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T-----T----CCCC----------------TGGGG-AGTG-----CGG-AGATAT-----------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................AACGTT--------------------------------------TTA-A----T---GTATTTCCTTGATTC--------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
droEug1
TAT-------TTG-----TTGCTTT----GGT---------TTCTGTAACGTT--------------------------------------TTA-A----TTTTGTATTTTTTGGTTTT--------------------------------------TGCA-TTTGCGTT--------TAT-TGCTACGTTGGACAAA-AGGTTT---CATTTGGTG----TTTCCTCTACT-------G-GATGTACCATAAATTTGGC--G-------T--CTCCTTGC--TGGG-TTG--------------------TAGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGTTT-TCAAAA-TTTTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TT----CCCC----------------TTGGG-AGTG-----CGGTAGATATGGGC------TSizeHit CountTotal NormTotal
No Reads
droBia1
TAC-------GTG-----TTGCTTT----GGT---------TTCTGTAACATT--------------------------------------ATA-A----T---GTTTTACTTGGTATC--------------------------------------TGCA-TCTGCATT--------TAC-GGCTACGTTGGACAAA-AGGATT---CATT-GGTGT---TTTCATCTAGT-------G-GATATCCCACAAACTGGGC--G-------T--CTCCTTGC--TGGG------------------------TGGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCAAAG-TTCTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TT----CCCC----------------TCGGG-AGTG-----CGGTAGATAT-----------SizeHit CountTotal NormTotal
No Reads
droTak1
TAT-------TTG-----TTGCTTT----GGT--------TTTGTGTAAGGAT--------------------------------------TTT-A----T---ATTTTACTTGGTATC--------------------------------------TGCG-TCTGCATG--------TAT-CGCTACGTTGGACAAA-AGGTTT---CACT-GGTG----TTTCCTCTAAT-------G-GATCTCCCATAAATTTGGT--G-------T--CTCCTTGC--TGGG------------------------TGGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCAAAG-TTTTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TT----CCCC----------------TTGGG-AGTG-----CGGTAGATAT-----------SizeHit CountTotal NormTotal
No Reads
droEle1
TAT-------TTG-----TTGCTTT----GGT---------TTCTGTAACGTG--------------------------------------TTAAA----T---GTTTTACTTGGTATCTGCATC--------------------------------TGCA-TCTGCATT--------TAT-TGCTACGTTGGACAAA-AGGTTT---CATTTGGTG----TTTCCTCTACTCAAATATGAGATATCCCATAGATGTGGT--G-------T--ATCCTTGC--TGGG------------------------TGTTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGATT-TCAAAG-TTTTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TTTTAATCCC----------------TTGGG-AGTG-----CGATAGATAT-----------SizeHit CountTotal NormTotal
No Reads
droRho1
TAT-------TTT-----TTGCTTT----GGT---------TTCTGTAACGTT--------------------------------------TTA-A----T---GTTTTACTTGGTATC--------------------------------------TGCA-TCTGCAAT--------TAT-TGCTACGTTGGACAAA-AGGTTT---CATT-GGTG----TTTCCTCTACT-------G-GATATCCCATAAATTTGGT--G-------T--CTCCTTGC--TGGG------------------------TGGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGATT-TCAAAG-TTTTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TTTTC-CCCC----------------TTGGG-AGTG-----CGGTTGATAT-----------SizeHit CountTotal NormTotal
No Reads
droFic1
TAT-------TTG-----TTGCTTT----GGT---------TTCTGTAACATT--------------------------------------TTA-A----T----TTTTACTTGGTTTC--------------------------------------TGCA-CCTGCATT--------TAT-TGCTAAGTTGGACAAA-AGGTTT---TACT-GGTG----T-TCCTCTACTT------G-GATATCCCATAAACTTGGT--G-------T--CTCTTTGC--TGGG------------------------TTGTG-------------------------------------------------------------CCTATGCGGT-AGATG-------------------AAACGACT-TCAAAG-TTTTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T----TT----CCCC----------------TTGGG-AGTG-----CGGTAGATAT-----------SizeHit CountTotal NormTotal
No Reads
droKik1
TAC-------TCGGGGTTTCGCTTTGGTTTGT----TTTTTTTGTGTAACGTT--------------------------------------T-A-T----T---GTTTATTAT----TA-TAAATCGGTTTTCGGTTTTTGGTTTTCGGTT------TGCA-ATTGCATTGTTTTTTTTATAGACTACGATGGACAAACATGGTT---CAGT-GGTTAGTGTTTCCTCTACG-------G-GTA-------------------------------------------------------------------TGTTG--------------------CCTGCTACGCTCGTTCTTCCAGGTTTCCGT----------------------------------------------------------------TTCCG------TTTCCCTTTTCCTTATTTTTTTTTGTTTTGGCAGTTGGTTTTCAACAACAACAACAACGAGTGTG-TGTGTTT----CCCT----------------TGGGG-AGTGTGTG-CAGTAGAGAT-----------SizeHit CountTotal NormTotal
No Reads
droAna3
TAT-------TTC-----TTGCTTT----GGT---------TTCTGTAACTT----------------------------------------------------------------------------------------------------------------------------------TGCTACGATGGACAAA-ACGA-G---CATT-GGTG----TTTCCTCAGCG-------G-GA-----------CTTGGT--A-------TCTCTCTTAGC--TT-----------------------------------------TGGT--------------------------------------------------------T-TGGTG-------------------AATTG-CT-TCAAAGGTTTTCCATTTACTT----TTTTTGGT-------TTTTTTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T-----T-----CAC----------------TTGGG-AGTG-----CAGTAGATGTGGGC-------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................CATT-GGTG----TTTCCTCAGCG-------G-G............................................................................................................................................................................................................................................................................................................................................2111.001000001
...................................................................................................................................................................................................................T-GGTG----TTTCCTCAGCG-------G-GA-----------................................................................................................................................................................................................................................................................................................................................1911.001000001
.................................................................................................................................................................................................................ATT-GGTG----TTTCCTCAGCG-------G-GA-----------................................................................................................................................................................................................................................................................................................................................2111.001000001
.........................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------T-TGGTG-------------------AATTG-CT-TCAAAGG..................................................................................................................................................2111.001000001
..............................................................................................................................................................................................................................TTCCTCAGCG-------G-GA-----------CTTGGT--A-------TCTCTCT.........................................................................................................................................................................................................................................................................................................2711.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------TTGGG-AGTG-----CAGTAGATGTG..........2111.001000010
droBip1
TAT-------TTC-----TTGCTTT----GGT---------TTCTGTAACAT----------------------------------------------------------------------------------------------------------------------------------TGCTACGATGGACAAA-AAGA-G---CATT-GGTG----TTTCCTCTGGG-------G-GA-----------TTTGGT--A-------T--CTCCTAGC--TTGG------------------------T--------------------------------------------------------------------------T-TGGTG-------------------AAATTGCT-TCAAAGGGATTCCATTTTCATTTATTTTTTGGT---------TTCTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-T-----T-----CAC----------------TTGGG-AGTG-----CAGTAGATGT-----------SizeHit CountTotal NormTotal
No Reads
dp5
TAT-------TTG-----TTGCTTTGGTTGGT---------TTCTGTAACGTT--------------------------------------TAACATACAT---TTATTTTAT--TATTTTTATT--------------------------------TTC---TTGCATT--------TAT-CTCTACAATGGACAAA-ACTTTTGCACATT-TGCAT-TCGTTCTACTACTTGGATGTG-GATGACCCATAATGTTGGTTC---CTTTT--------TTATGTGGGAT-GTGGGGATGCCTTTAGCCGGGAGGTGGCTCCATTGTGGGTTTGGTGTCGGT-------GTCCTCCTATTCCTCCTCC---TCCTCCTCCTATGCGGT-AGATG-------------------AATCGATTCTCAAAG-TTTTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-TTTAT--------T-TTCTTT-TTTTCGTTTTGGGG-AGTG-----CTTTAGATGGGGGCGTGGTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................TGTAACGTT--------------------------------------TAACATACAT---TT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
........................................................................................................................................................................................................................................................................................................................................GTTTGGTGTCGGT-------GTCCTC............................................................................................................................................................................................................................1911.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCG------------------------------TTTTTGGCAGTTGGTT----------...................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGATTCTCAAAG-TTTTCCG------------------------------TT...........................................................................................................2111.0010000001000
...........TG-----TTGCTTTGGTTGGT---------TTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
........................................................................................................................................................................................................................................................................................................ATGCCTTTAGCCGGGAGG....................................................................................................................................................................................................................................................................1811.0010100000000
............G-----TTGCTTTGGTTGGT---------TTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
........................................................................................................................................................................................................................................................................................ATGTGGGAT-GTGGGGATG...................................................................................................................................................................................................................................................................................1811.0010000000001
.........................................................................................................................................................................................................................................................................................................TGCCTTTAGCCGGGAGGTGG.................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
TAT-------TTG-----TTGCTTTGGTTGGT---------TTCTGTAACGTT--------------------------------------TAACATACAT---TTATTTTAT--TATTTTTATT--------------------------------TTC---TTGCATT--------TAT-CTCTACAATGGACAAA-ACTTTTGCACATT-TGCAT-TCGTTCTACTACTTGGATGTG-GATGTCCCATAATGTTGGTTC---CTTTT--------TTATGTGGGAT-GTGGGGATGCCTTTAGCCGGGAGGTGGCTCCATTGTGGGTTTGGTGTCGGT-------GTCCTCCTATTCCTCCTCCTGCTCCTCCTCCTATGTGGT-AGATG-------------------AATCGATTCTCAAAG-TTTTCCG------------------------------TTTTTGGCAGTTGGTT----------ACAACAACGAGTGTT-TTTAT--------T-TTCTTTTTTTTCGTTTTGGGG-AGTG-----CGTTAGATGGGGGCGTGGTTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................TGTG-GATGTCCCATAATGTTG............................................................................................................................................................................................................................................................................................................................2111.001000100
droWil2
TAT-------GTA-----TGT---A----TGTTTGTTTGTTGTGTGTATGTATTTTGTGGAGTTGTGCTCCATTAATGTCTAT--ATGGTGTCTAT--------------------------------------------------TGATTTGCTAA---------------------------------------------------------TTG----TCTAGTTTAAG-------G-GATACCATTTGAAT-AGGT--G-------C--CAGGTTCC-----------------------------------------------------------------------------------------------------------AGGTT-------------------TATCTTTC-ACAATG-ATCTCT----------------------------CTCTCTTTGGCAGTTGG---------------------AGTGCA-T----TTTAG-ATAT----------------ATGGGTATGT-----CGGGGGAAAT-----------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................TGGTGTCTAT--------------------------------------------------TGATTTGCTAA---------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................2111.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAATG-ATCTCT----------------------------CTCTCTTTGG......................................................................................................2111.00101000
........................................................................................................................................................................................................................................................TTTGAAT-AGGT--G-------C--CAGGTTCC-----------------------------------------------------------------------------------------------------------..........................................................................................................................................................................................2111.00110000
droVir3
TAATTTTTTTTTA-----TGGCTCT----GGT---------TTCTATAACGAT--------------------------------------TCT------T---GTGT----TTAATTC--------------------------------------TACAGCCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................TCT----GGT---------TTCTATAACGAT--------------------------------------TCT------T---GTGT----T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
droMoj3
TGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTT-------GTG-----GCTTTTT----GGT---------TTCTACTACGTT-----------TTTTTTCA-CAGTGTTTCCATAT---GGCTAT--------------------------------------------------CTCTTTCACAC-------------------------TGCT---------------------------------------------------------------------------------------CCAGTTGC--CGAG------------------------CTGTT-----------------------------------------------------------CTTCTGTGCGTT-AGATTATGGTTTGTTTCATATTCAAAACGATT-TCATAT-TTTG--T------------------------------TTTTTGGCAGTTGGTT----------ACAACGA---GTGAGTTTTA-T-------T-TTTTTT----------TTTTC-AGTATTTTTCTG------TGTTT------TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:22 PM