ID:

dsi_7545

Coordinate:

3l:11831750-11831899 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-13.6	-13.6	-13.5

Flybase annnotation

exon [3l_11831900_11832050_+]; five_prime_UTR [3l_11831900_11832013_+]; intron [3l_11830838_11831899_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCGGGCAAAACCATTGATGTGAATGAATGTGAATCAGCAGTGCCATATAACCTGTACTATATCCAATACCAAGAAATAACCATCGAACAAGCAACCCAAACAACCAAAACAGCCAAGAAAACTACATAGCTGGCTAATGACGTCATCGATAGAGTACTGGTACAACTGCTGCTTTTGGCTAATTTATTCTCACATTTCAGCCGCATACATTCTACATGCCAATAATCGAGCCCAACGACTGACTGAGCCA ************************************************((.(((((.((((...............................................(((((...............))))).(((....))).)))).))))).)).......(((......))).....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M025 embryo	M053 female body	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
.................TGTGAATGAATGGGAGTCA......................................................................................................................................................................................................................	19	2	2	1.00	2	0	0	0	2	0	0
.........................................................................................................................................................................................................................GCCAATAATCGAGCCCAACGACTGACTG.....	28	0	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................ATAGAGTACTGGTACAACTGCTGCTTT...........................................................................	27	0	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................AATGACGTCATCGATAGAG................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................GCCAACGACCGACTGCGCC.	19	3	20	0.10	2	0	0	0	0	2	0
.................TGGGAATGAACGTGTATCA......................................................................................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	1	0
...................................................................................................................................................GAACGAGTACTGGGACAAC....................................................................................	19	3	20	0.05	1	0	0	0	0	0	1

Anti-sense strand reads

AGCCCGTTTTGGTAACTACACTTACTTACACTTAGTCGTCACGGTATATTGGACATGATATAGGTTATGGTTCTTTATTGGTAGCTTGTTCGTTGGGTTTGTTGGTTTTGTCGGTTCTTTTGATGTATCGACCGATTACTGCAGTAGCTATCTCATGACCATGTTGACGACGAAAACCGATTAAATAAGAGTGTAAAGTCGGCGTATGTAAGATGTACGGTTATTAGCTCGGGTTGCTGACTGACTCGGT ************************************************((.(((((.((((...............................................(((((...............))))).(((....))).)))).))))).)).......(((......))).....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M023 head	SRR618934 dsim w501 ovaries	M024 male body
...................................................................TGGTTTTGTAGTGGTAGCTTGT.................................................................................................................................................................	22	3	2	1.50	3	2	0	0	1	0	0	0
.................................................TGGACATGAGATAGG..........................................................................................................................................................................................	15	1	1	1.00	1	0	0	1	0	0	0	0
...............................................................................................GGTTGGTTGGTTTTGTCGGGT......................................................................................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................GTACAGTTAGTAGCTCGG..................	18	2	3	0.33	1	0	0	0	0	1	0	0
...............................................................................................................................................TTAGCGATCTCATGAGCAT........................................................................................	19	3	8	0.13	1	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................GGGTTGCGGAGTGACTC...	17	2	10	0.10	1	1	0	0	0	0	0	0
.....................................................CATGGTATAGGTTAT......................................................................................................................................................................................	15	1	10	0.10	1	0	0	0	0	0	1	0
..............................................................................................................TCTGTTCTTTTGAGGTCTCG........................................................................................................................	20	3	14	0.07	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................TTGGCGCGGGCTGCTGACT........	19	3	15	0.07	1	0	0	0	0	0	1	0
..........................................................................TTATTGCGAGCTTGTCCGT.............................................................................................................................................................	19	3	15	0.07	1	0	1	0	0	0	0	0
.................................AGTCGTCGCGGTATA..........................................................................................................................................................................................................	15	1	19	0.05	1	0	0	0	0	0	1	0

Generated: 04/24/2015 at 10:38 AM