ID:

dsi_7537

 Coordinate:

2r:19786897-19787104 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-59.4 -59.2 -59.1

Flybase annnotation

exon [2r_19787105_19787286_-]; CDS [2r_19787105_19787188_-]; exon [2r_19786809_19786896_-]; CDS [2r_19786809_19786896_-]; intron [2r_19786897_19787104_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGGTGAAGGCGTCGCCCTCGAAGTTCCAGCAATTTGCGAATGCTGCACAGGTATTTTTGGGTGCGGGGGCGGGGAGGTGCGGACTGCCGATGAAAAATGCAAATTGAGGAAAACATACGCACACAGACACGGAATTGCATGTGTGTCGGTGAACTGGGAAGGGGTCGCCAGTAGTGCGATTGTGACCCATTTCTGGGTGCACAATTGAAAAGTGAAGTGACCAGCTGCTCATGAGTCTTCCTTGGACTTTTTTCCCAGGCCGCCGTGAGCTCATCGTCGAGCACAACACCCAATTCGGAAACGAACAC
****************************************************************...(((((...........))))).........................(((.((((((((..((......))..)))))).)))))..(((((((((((((((((......(((((((((((((....))))).)))))))).....))..))))))..........((((((.....)))))))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M023
head
 SRR902009
testis
 M053
female body
 O001
Testis
 O002
Head
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................................................................................................................................................................CATCGTCGAGCACAACACCC................. 20 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GGCCGCCGTGAGCTCATCGTCGAGC.......................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GTCGCCCTCGAAGTTCCAGC...................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................GGGGGCGGGGAGGTGCGGAC................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CGCCGTGAGCTCATCGTCGAC........................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGGGTGCGGGGGCGGGGAGGTA..................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................TTCCTTGGACTTTTTTCCCAG.................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CTCATCGTCGAGCACAATACC.................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................GGGGGCGGGGAGGTGCGGA................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GGAATTCCATGTGTATCGGT.............................................................................................................................................................. 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GACACGGAATTGCATGTGTGTCG................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................TTGGGTGCGGGGGCGGGG.......................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AGTAGTGCGATTGTGACCC........................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................GTTCCAGCAATTTGCGAAT........................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................GGGTGCGGGGGTGGG........................................................................................................................................................................................................................................... 15 1 20 0.55 11 0 0 6 0 0 0 0 0 0 0 1 4 0 0
...........................................................................................................................................................................................................................................................................................CAACACCCAATTCGGA......... 16 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TGGTTAAGACGTCGCCCT.................................................................................................................................................................................................................................................................................................. 18 3 20 0.20 4 1 0 0 0 3 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GGGACGGTGGACTGGGAAGGG................................................................................................................................................. 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................CGTGAAGGTGCGGACTACC............................................................................................................................................................................................................................ 19 3 13 0.15 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................GGGAAGATGCGGACTACC............................................................................................................................................................................................................................ 18 3 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................AGGAGAAATGCAATTTGAGGA...................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................GGGACGGTGAACTGAGAAGG.................................................................................................................................................. 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....GAAGGCGTCGCACTC................................................................................................................................................................................................................................................................................................. 15 1 16 0.13 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0
...........................................................................................................................................................................................................................................................................AGGTCATCGTCAAGCAC........................ 17 2 19 0.11 2 0 0 1 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................AAATTGAAAAGACCAGCTGCT............................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................GGGTGCGGGGCCGGAGA......................................................................................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................CGGGTCGGGGGGCGGGGAGG....................................................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AGTGGGACTGTGACCCATA..................................................................................................................... 19 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CATGCGGCAGAGGTATTTT........................................................................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................CTCGAAGTTCCTCCAATC.................................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TCGGTGAACTGATAAG................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCCACTTCCGCAGCGGGAGCTTCAAGGTCGTTAAACGCTTACGACGTGTCCATAAAAACCCACGCCCCCGCCCCTCCACGCCTGACGGCTACTTTTTACGTTTAACTCCTTTTGTATGCGTGTGTCTGTGCCTTAACGTACACACAGCCACTTGACCCTTCCCCAGCGGTCATCACGCTAACACTGGGTAAAGACCCACGTGTTAACTTTTCACTTCACTGGTCGACGAGTACTCAGAAGGAACCTGAAAAAAGGGTCCGGCGGCACTCGAGTAGCAGCTCGTGTTGTGGGTTAAGCCTTTGCTTGTG
**************************************************...(((((...........))))).........................(((.((((((((..((......))..)))))).)))))..(((((((((((((((((......(((((((((((((....))))).)))))))).....))..))))))..........((((((.....)))))))))))))))**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M023
head
 SRR902009
testis
 M024
male body		 M025
embryo
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
..............................................................................CGCCTGACGGCTACTTTTTAC................................................................................................................................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0
................................................................................CCTGACGGCTACTTTTTA.................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................................GTCCATAAAAACCCACGC................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................TCGTGTTGTGGGTTAAGCCTT........ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............GGAGCTTCAAGGTCGTTAA.................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................TAGGGTCCGGCGGCACTCGAGTA.................................. 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................CGGTCATCACGCTAACACTGG......................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................GGTCCGGCGGCACTCGAGTA.................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................CTGGTCGACGAGTACTCAGA...................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................AGGGTCCAGCGACGCTCGAGT................................... 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................................................CGGCGGCACTCGGGT................................... 15 1 4 0.25 1 0 0 0 0 0 0 0 1 0
.............................................................AGGCCCCCGCCCCTC........................................................................................................................................................................................................................................ 15 1 13 0.08 1 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................CGCGGTCATCAAGCTAACGC............................................................................................................................ 20 3 16 0.06 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................................................CCGGCGGCACTCGTGATGC................................ 19 3 19 0.05 1 0 1 0 0 0 0 0 0 0
..........................GTGGTTAAACGCTGACGACC...................................................................................................................................................................................................................................................................... 20 3 19 0.05 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................GTTGTGGGATAAGTCT......... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:19786847-19787154 - dsi_7537 AGGTGAAGGCGTCGCCCTCGAAGTTCCAGCAATTTGCGAATGCTGCACAGGTATTTT------TGGGTGCGGGG--GCGG-GGAG-------GTGCGGACTGCCGATGAAAAATGCAAATTGAGGAAAACATA-CGCACACAGACA---C-----------GGAATTG---C----------------ATGTGTGTC------GGTG--AACTGGGAAGG-G-GTCGC-----------------------------------------------CAGTAGTGCGATTGTGACCCATTTCTGGG----------TGCACAA-TTGAAAAGTGAAGTGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGA--GTCT---TCCTTGG------ACT--TTTTTCCCAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---AACGAACAC
droSec2 scaffold_9:2558449-2558756 - AGGTGAAGGCGTCGCCCTCGAAGTTCCAGCAATTTGCGAATGCTGCACAGGTATTTT------TGGGTGCGGGG--GCGG-GGAG-------GTGCGGACTGCCGATGAAAAATGCAAATTGAGGAAAACATA-CGCACACAGACA---C-----------GGAATTG---C----------------ATGTGTGTC------GGTG--AACTGGGAAGG-G-GTCGC-----------------------------------------------CAGTAGTGCGATTGTGACCCATTTCTGGG----------TGCACAA-GTGAAGAGTGAAGTGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGA--GTCT---TCCTTGG------ACT--TTTTTCCCAGGCCGGCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---CACGAACAC
dm3 chr2R:19264093-19264403 - AGGTGAAGGCGTCGCCCTCGAAGTTCCAGCAATTTGCGAATGCTGCACAGGTATTTT------TGTGTGCGGGG--GCGG-GGCG-------GTGCTTATTGCCGATGAAAAATGCAAATTGAGGAAAACATA-CGCACACAGACA---C-----------GGAATTG---C----------------ATGTGTGTC------GGTG--AACTGGGAAGG-G-GTCGC-----------------------------C----------T-T----CGATTGTGCGATTGTGACCCATTTCTGGG----------TGCACAA-GTGAAAAGTGAAGTGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGA--GTCT---TCCTTGG------ACT--TTTTTCCCAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---AACGAACAC
droEre2 scaffold_4845:20634383-20634671 - AGGTGAAGGCGTCGCCATCGAAGTTCCAGCAATTTGCGAATGCTGCACAGGTATTTT------TGGGTGCGGGG--GCGG-GGCG-------G-----CTTGTCAATGAAAAATGCAAATTGAGGAAAACATA-CGCACACAGACA---C-----------GGAATTG---C----------------ATATGTGTC------GGTG---------AAGG-G-GTCCC-----------------------------------------------CAATGGTGCGATTGTGACCCAAATCTGGG----------TG--------CACAAATGAAGGGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGA--CTCT---TCCTTGC------CCT--TTTTTCCCAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---AACGAACAC
droYak3 2R:19232868-19233164 - dya_620 AGGTGAAGGCGTCGCCATCGAAGTTCCAGCAATTTGCGAATGCTGCACAGGTATTTT------TGGGTGCGGGG--GCGG-GGCG-------G-----GTTGCCGATGAAAAATGCAAATTGAGGAAAACATA-CGCACACAGACA---C-----------GGAATTG---C----------------ATGTGTATG------GGTG--AACTGGGAACGGG-GTCGC-----------------------------------------------CAATAGTGCGATTGTAACCCATTTCTGGC----------TG--------CACAAGTGAAGTGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGA--TTCT---TCCTTGC------CCT--TTTTTCCCAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---AACTAACAC
droEug1 scf7180000409474:389624-389916 - AGGTGAAGGCGTCGCCATCGAAATTCCAGCAATTTGCGAATGCTGCACAGGTATTTA-------CAATGCGGTG--GCGG-GGTG-------G---GAGGTGTCAAAGAAAAATGCAAATTA-GGAAAACATA-CAAACACCGATA---A-----------GGCTTTA---C----------------ATATGTGTT------TGTAA-GACTGGGAAGG-G-CTCCG-----------------------------------------------ATATAGTGCATTTGTGACCCATTTCTGGG----------CA--------GAGAATTGAAGGGACCAGCTGT---------------------------------------------------------------------------------T--------------------------------------------------AATGGGAATTT--------G-------ACC--ATTTTTCTAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---CACCAACAC
droBia1 scf7180000301754:3687740-3688043 + AGGTGAAGGCGTCGCCGTCGAAATTCCAGCAGTTTGCGAATGCTGCACAGGTATTTT------ATAGGGCGGAGGGGCGG-GGCG-------G------GTGCCGATGAAAAATGCAAATTAAGCAAAACATA-CGCACACCGACA---GGGATTGG----G--ATTG---T----------------TCGTGTGTG------GGTTG-AGCTGGGAAGG-G-TTCGG-----------------------------------------------AAATAGTGCAATTGTGTCCCATTTCTGGGGAGGGGGAGGAGGAGAAGGAGACAAGTGAAGTGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------C----------------------------T--GCTTTTCTAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---TACGAACAC
droTak1 scf7180000412807:222865-223170 + AGGTGAAGGCGTCGCCGTCGAAATTCCAGCAATTTGCGAATGCAGCACAGGTATTTA------TTGGAGCGGGG--GGTGGGGCT-------T-----TGTACCGATGAAAAAAGCAAATTAAGGAAAACATA-CAAACACCGATGGA-T-----------GGGATTG---C----A--CATGT----ATATGTGTA------TGTGTAGGTAGCGAAGG-G-TTCTG-----------------------------------------------AAATAGTGCACAGGTGACCCATTTCTCGGGGGG------AA--------GACA-----AATGAACAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGA--CTTT---TTCTATT------CAA--TTTTTTCTAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---AACGAGCAC
droEle1 scf7180000491201:1565666-1565959 - AGGTGAAGGCGTCGCCGTCGAAATTTCAGCAATTTGCGAATGCTGCACAGGTATTTT-----GTGGGTGCGAGG--GCGGGGGCG-------A-----GGTGCCGATGAAAAATGCAAATTAAGAAAAACATA-CGCACACCGACA---C-----------G--ATTG---T----------------CTGTGTGTT------TGTGG-TGCTGGGAGGGGG-GTCGA-----------------------------------------------AAATAGTGCAATTGTGACCCATTTGTGGG----------GT--------GACAAGTGAAGGGAACAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGG--CTTT---GGCTT----------T--TCCCTTCTAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---CACGAACAC
droRho1 scf7180000780066:529422-529711 + AGGTGAAGGCGTCGCCGTCGAAATTCCAGCAATTTGCGAATGCTGCACAGGTATTTTAGG--GTTGGTGCGGGG--G------AG-------G-----TGTGCGGATGAAAAATGCAAATTAAGGAAAACATA-CGCACACCGACA---T-----------G--ATTG---T----------------TTGTGTGCT------TGTAA-TGCTGGGAAGG-G-GTCGG-----------------------------------------------AAATAGTGCAATTATGACCCATTTCTCTCGA--------CA--------GACAAGTAAAGTGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGG--CTTT--------GG------TC---TTTTTTCTAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---CACGAACAC
droFic1 scf7180000453201:15667-15966 - AGGTGAAGGCGTCGCCGTCGAAATTCCAACAATTTGCGAATGCTGCACAGGTATTGCAT----TGGGT-CGGTG--GAAG------------G-----GGTGCAGATGAAAAATGCAAATTAAGAAAAACATA-CGCACACCGACA---CGATT------------TG-T-T----------------TTGTGTATT------TGTTC-GGCTAGGAAGG-G-GTCGG-----------------------------C-----------------AAATAGTACTATTGTGACCCATTTCTGGG----------AA--------GACAAGTGAAGTGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CACGG--CTCTGTTTTCTTTT------ACTTCTCTTTTCTAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---CACGAACAC
droKik1 scf7180000302398:248114-248438 + AGGTGAAGGCGTCGCCGTCCAAATTCCAGCAATTTGCGAATGCTGCACAGGTATTGCAGTTTGTGGGTG--GAG--GGTG-AAAGCAACGAAGAGGGAGGT-----GTAAAAATGCAAATTAACGAAAACATA-CGCAAATTCGTA---GTATTTGA-----------GTGT----------AT----ATATGTGTG------TGTGG-AGCTGGGAAAATG-ATT-G----------------------------A------------------AATAGGTGCAACTGTGACCCATTTGGGGA----------GA-----------------A---A---------------------------------------------------------C-CCCCAGGAAACCAGACA--GC------TGTCG--------CA----------------AA------AACACACT-------CATA----------------TAATTCGGCA--ATCTTTCTAGGCCGCCGTGAGCTCATCGTCGAGCACAACG---CCAA---CTTCGGA---GACGAACAC
droAna3 scaffold_13266:7900402-7900704 + AGGTGAAGGCGTCCCCCTCGAAATTTCAGCAATTTGCGAATGCTGCCCAGGTACTTT------CTCGTTAGGAG--GGGA-TGCG-------G------GGTCAGATGAAAAGTGCAAATTAAGAAAAACATAACGCACACAATCAAAACAGTAGCA-CCGAGAGGTG---T----------------ATGTGTGCG------GGGG--AACTGAGAAAGTG-ATT-T-----------------------------------------------TTATTGTCC-ATTTTGACCCATTTCAGTG--------------------GACC--TGATAGAGCCAGCTGC---------------------------------------------------------------------------------TG--------CA--------------CTT------------ACT-------CAC-----T-----------TATTT--CCA--TTCCTTTCAGGCCGCCGTGAGCTCATC---GAGCACAACA---CCCA---ACTCGGA---CTCGAACAA
droBip1 scf7180000396759:921694-921986 - AGGTGAAGGCGTCACCCTCGAAATTTCAGCAATTTGCGAATGCTGCCCAGGTACTTT------CTCGTTGGGAG--GGGA-TGCG-------G------GGGCAGCTGAAAAGTGCAAATTAAGAAAAACATAACGCACACAATCAAAAC-----------AGACT----GCGTGC------------ATGTGT----------GGGG-GACTGGGAAAGTG-ATTTT-----------------------------------------------C-ATTGC-CCATTTCGACCCATTTCAGGG----------AA--------CCCA-ATAAAG---CCAGCTGC---------------------------------------------------------------------------------TG--------CA--------------CTT------------ACT-------CATT----------------TGTTT--GCT--TTCGTTTTAGGCCGCCGTGAGCTCATC---GAGCACTACA---CCCA---ACTCGGA---CTCCAACAC
dp5 3:9130000-9130330 - dps_1109 AGGTGAAAGCGTCACCATCCAAATTCCAACAATTCGCGACTGCTGCACAGGTAGG-----------------GG--GGGG----------------------GGAAAGAAAAATGCAAATTGATGAAAACATA-CGCAGGCAAAAA---CAATCTCA-----------GTGT----------------GTGTGTGTG------TGTGA-AATTGAGCAAGTGGAGCGG-----------------------------C----------A-T-----GAAAATGCATTTTTGACCCATTTCCACT----------ATCATAA-TAGACA--T--TATGGCCAGCTGCTGG----------------CCTAGCAC--------------------AGC-ACCCAGGAAAAC--------C------TT--G--------CA--------------CTAACACACATTCCCGCACATGCCTAATGA--CTC--------------------------TTGCAGGCGGCCGTGAGCTCATCGACGAACACAACA---CCAAACAGCTCTGA---CACCAACAC
droPer2 scaffold_4:4451905-4452233 - AGGTGAAAGCGTCACCATCCAAATTCCAACAATTCGCGACTGCTGCACAGGTAGG---------------------G----------------------GGGGAAAGAAAAAATGCAAATTGATGAAAACATA-CGCAGGCAAAAA---CAATCTCA-----------GTGT----------------GTGTGTGTG------TGTGA-AATTGAGCAAGTGGAGCGG-----------------------------C----------A-T-----GAAAATGCATTTTTGACCCATTTCCACT----------ATCATAA-TAGACA--T--TATGGCCAGCTGCTGG----------------CCTAGCAC--------------------AGC-ACCCAGGAAAAC--------C------TT--G--------CA--------------CTAACACACATTCCCGCACATGCCTAATGA--CTC--------------------------TTGCAGGCGGCCGTGAGCTCATCGACGAACACAACA---CCAAACAGCTCGGA---TACCAACAC
droWil2 scf2_1100000004954:2590976-2591331 + AGGTGAAGGCGTCGCCGTCCAAATTTCAACAATTCGCAAATGCGGCTCAAGTAAG---------------------GCAG-AGAA-------A-------ATCGAATAGAAAATTCATAAAAATGAAAACATA-CGCACACCAATA---CAATCGCTACC------T-ATGTGCGC------------GTGTGTGTG------AGTG--T-----ATGGGTGGAATGACTAGGACTGGGAGTGGAAGAAAAAATAGC------------------AACAATTGCAATTTTGACCCATTTTC-----------------------------TTAAATGCCCAGCTGCTGT----------------TAAAGTCGCAAAAAGAAAATTAAAAGGAAGCATCCCAAGAAATC--------C--------------------A--------------CTA---------------------TAACGA--CTCT---TA------------CC--TGTTTTTTAGGCCGCTGTGAGCTCATCATCATCCAGCACA---CCCAACAGTTCCGA---CACCAATAC
droVir3 scaffold_12875:18537361-18537762 + dvi_7768 AGGTGAAAGCGTCGCCGTCCAAATTCCAACAATTTGCAAATGCAGCCCAGGCAAGTA-----------------------------------------------ACAAAAAAGTGCAAATTAATAAAAACATA-CGCACACAAGCAAA-CTGTT---GGC------T-GTGTGTGCG--TGTGT----ATGTAGGTATGTGTCTGCTT-AACGGGCAAAG-G-GATGC--------------------ACCCA-AACAGCCAGTGCAATTTTCAAAAATTGTTTT-ATTTGACCCATTTAAC----------------------------AGAAACAAGCAGCTGT---GTGCACACCCAACCCCCCAAGCGC--------------------A----CTC--------ATACA-----CAATCAC--ACCGCATGACACACACACACACACACACACGCACACACACACACATA---CATGA--CTTT---TA-TCGG------TAT--GCTTTTATAGGCCGCCGTGAGCTCATCGTCCAGCACAACAACACCGAACAGCTCGGAGAATACCGACAC
droMoj3 scaffold_6496:12189748-12190138 + AGGTGAAAGCGTCGCCGTCCAAATTCCAACAATTTGCAAATGCAGCCCAGGCAAGA----------------------------------------------TAGAAAAAAAATGCAAATTAATGAAAACATA-CGCACACAAACAAA-CTGT------------TTG---TGTGTGTGTGTGTTAACTAGTGTGTGTGTGTTTGTCC-TAATGGGGAGGTG--ATGC--------------------GTCCAAAACAGTCAATGCAATTGGATAGTTCTATTT-AATTTGACCCATTTGAA----------------------------TGAAACTGGCAGCTGG---GTGCACACCCAACCCCCCTAGCAC--------------------A-C-ACCC--------ATACACAACACAATCAC--GCCGCATGACA----------------------CACACACACACATGCAA-GGGA--ATTT---TA-TCGG-TTT--GC---TTTATTGTAGGCCGCCGTGAGCTCATCGTCCAGCACAACAACACCAA---GCTCAGAGAATACCGATAC
droGri2 scaffold_15245:4643213-4643341 + AGGTGAAAGCGTCGCCGTCCAAATTCCAACAATTTGCAAACGCAGCCCAGGCAAGAA-----------------------------------A-----CAGACAGAAAAAAAATGCGAATTAACGAAAACATA-CGCACACAAACA---A-----------GCAGT--ATGT----------------GTGTGTGTC------TATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGGTGAAGGCGTCGCCCTCGAAGTTCCAGCAATTTGCGAATGCTGCACAGGTATTTT------TGGGTGCGGGG--GCGG-GGAG-------GTGCGGACTGCCGATGAAAAATGCAAATTGAGGAAAACATA-CGCACACAGACA---C-----------GGAATTG---C----------------ATGTGTGTC------GGTG--AACTGGGAAGG-G-GTCGC-----------------------------------------------CAGTAGTGCGATTGTGACCCATTTCTGGG----------TGCACAA-TTGAAAAGTGAAGTGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGA--GTCT---TCCTTGG------ACT--TTTTTCCCAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---AACGAACACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTCGAGCACAACA---CCC.......................2013.00300300000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGCCGTGAGCTCATCGTCGAGC...................................2512.00202000000000000000
..........GTCGCCCTCGAAGTTCCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
......................................................................GGGG--GCGG-GGAG-------GTGCGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGTGAGCTCATCGTCGAC....................................2111.00101000000000000000
...............................................................TGGGTGCGGGG--GCGG-GGAG-------GTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TCCTTGG------ACT--TTTTTCCCAG...........................................................2111.00100010000000000000
......................................................................GGGG--GCGG-GGAG-------GTGCGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
..............................................................................................................................................GACA---C-----------GGAATTG---C----------------ATGTGTGTC------G.......................................................................................................................................................................................................................................................................................................................................................................................2311.00100001000000000000
........................................................T------TGGGTGCGGGG--GCGG-GG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000001000000000
....................................................................................................................................................................................................................................................................................AGTAGTGCGATTGTGACCC............................................................................................................................................................................................................................................................................................1911.00110000000000000000
......................GTTCCAGCAATTTGCGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA---CCCA---ATTCGGA---.........1620.50100000001000000000
droSec2
AGGTGAAGGCGTCGCCCTCGAAGTTCCAGCAATTTGCGAATGCTGCACAGGTATTTT------TGGGTGCGGGG--GCGG-GGAG-------GTGCGGACTGCCGATGAAAAATGCAAATTGAGGAAAACATA-CGCACACAGACA---C-----------GGAATTG---C----------------ATGTGTGTC------GGTG--AACTGGGAAGG-G-GTCGC-----------------------------------------------CAGTAGTGCGATTGTGACCCATTTCTGGG----------TGCACAA-GTGAAGAGTGAAGTGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGA--GTCT---TCCTTGG------ACT--TTTTTCCCAGGCCGGCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---CACGAACACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.GGTGAAGGCGTCGCCCTCGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010010
........................................................T------TGGGTGCGGGG--GCGG-GGAG-------GTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010100
..........................................................................................................................................CACAGACA---C-----------GGAATTG---C----------------ATGT...................................................................................................................................................................................................................................................................................................................................................................................................2120.5010001
....................................................................................................................................................................................................................................................................................................................................GAAGAGTGAAGTGACCAGCTG..........................................................................................................................................................................................................................................2120.5011000
.............................................................................................................................................................................................................................................................................................................GGG----------TGCACAA-GTGAAGAGTGAAG....................................................................................................................................................................................................................................................2320.5010001
...............................................................................................................................................................................................................................................................................................................G----------TGCACAA-GTGAAGAGTGAAGTGAC................................................................................................................................................................................................................................................2520.5010100
...................................................................................................................................................................................................................................................................................CAGTAGTGCGATTGTGACCCATTTCT......................................................................................................................................................................................................................................................................................2620.5010001
.............................................................................................................................................................................................................................................................................................................................ACAA-GTGAAGAGTGAAGTG..................................................................................................................................................................................................................................................1930.3311000
..................................................................................................................................................................................................GTC------GGTG--AACTGGGAAGG-G-GT..................................................................................................................................................................................................................................................................................................................................................................2130.3310001
dm3
AGGTGAAGGCGTCGCCCTCGAAGTTCCAGCAATTTGCGAATGCTGCACAGGTATTTT------TGTGTGCGGGG--GCGG-GGCG-------GTGCTTATTGCCGATGAAAAATGCAAATTGAGGAAAACATA-CGCACACAGACA---C-----------GGAATTG---C----------------ATGTGTGTC------GGTG--AACTGGGAAGG-G-GTCGC-----------------------------C----------T-T----CGATTGTGCGATTGTGACCCATTTCTGGG----------TGCACAA-GTGAAAAGTGAAGTGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGA--GTCT---TCCTTGG------ACT--TTTTTCCCAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---AACGAACACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCGTGAGCTCATCGTC.......................................2013.0030000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................C------GGTG--AACTGGGAAGG-G-G...................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................A-CGCACACAGACA---C-----------GGAATTG---........................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................GGTG--AACTGGGAAGG-G-GTCGC-----------------------------C----------T-.....................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
................................................................................................................................................CA---C-----------GGAATTG---C----------------ATGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000
.............................................................................................................................................................................................TGTGTGTC------GGTG--AACTGGGAAGG-G-....................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...................................................................................................................................................................................................TC------GGTG--AACTGGGAAGG-G-GTC.................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000
....................................................................................................................................................................................................................................................................................GATTGTGCGATTGTGACCCAT..........................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCGTGAGCTCATCGTCGA.....................................2212.0020000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CGATTGTGCGATTGTGACCCA...........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................ACTGGGAAGG-G-GTCGC-----------------------------C----------T-T----CGATTGTGC.......................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................CGCACACAGACA---C-----------GGAATTG---C----------------.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................................................................................................................................................................................................................................T----CGATTGTGCGATTGTGACCCATTTCTGG....................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................................................................................................................G--AACTGGGAAGG-G-GTCGC-----------------------------C----------.......................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCGTGAGCTCATCGTCGAG....................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................CACAGACA---C-----------GGAATTG---C----------------ATGT...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................CAGACA---C-----------GGAATTG---C----------------ATGTGTG................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TCTGGG----------TGCACAA-GTGAAAAGTGAA.....................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
............................................................................................................................GAAAACATA-CGCACACAGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGA--GTCT---TCCTTGG------ACT--TTTTT................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................GGAAGG-G-GTCGC-----------------------------C----------T-T----CGAT............................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ATGTGTGTC------GGTG--AACTGG............................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................................................................................................................................................................ACTGGGAAGG-G-GTCGC-----------------------------C----------T-T----CG..............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.........CGTCGCCCTCGAAGTTCCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CGAAGTTCCAGCAATTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTGAGCTCATCGTCGAGC...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................CA---C-----------GGAATTG---C----------------ATGTGTGTC------G.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................................................................................ATGTGTGTC------GGTG--AACTGGGA..........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................G-GGCG-------GTGCTTATTGCCGATGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TTCTGGG----------TGCACAA-GTGAAAAGTGAAGT...................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCGTGAGCTCATCGTCGAGCA..................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................ACAA-GTGAAAAGTGAAGTGACCAGC............................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...............................................................TGTGTGCGGGG--GCGG-GGCG-------GTGCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................AA-GTGAAAAGTGAAGTGA.................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................AAAGTGAAGTGACCAGCTG..........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................GCACACAGACA---C-----------GGAATTG---........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................TG---C----------------ATGTGTGTC------GGTG--AACTGGT...........................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................GTGTGTC------GGTG--AACTGGGAAG........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................CACAGACA---C-----------GGAATTG---C----------------ATGTGTG................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................GATTGTGCGATTGTGACCCA...........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
...............................................................................G-GGCG-------GTGCTTATTGCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................G----------TGCACAA-GTGAAAAGTGAAG....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................T-T----CGATTGTGCGATTGTGACC.............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................C------GGTG--AACTGGGAAGG-G-GT..................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................ATA-CGCACACAGACA---C-----------GGAATTG---C----------------A......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................AACTGGGAAGG-G-GTCGC-----------------------------C----------T-T----C...............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................AAGTGAAGTGACCAGCTG..........................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACA---CCCA---ATTCGGA---AAC......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGGCCGCCGTGAGCTCAT...........................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CA---C-----------GGAATTG---C----------------ATGTGTG................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................ATTG---C----------------ATGTGTGTC------GGTG--AACTG.............................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCCCAGGCCGCCGTGAG................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................GACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGA--GT............................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................C------GGTG--AACTGGGAAGG-G-GTC.................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................CACACAGACA---C-----------GGAATTG---C----------------ATG....................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
................CTCGAAGTTCCAGCAATTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................C------GGTG--AACTGGGAAGG-G-GTCGC-----------------------------..................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
................................................................................................................................................CA---C-----------GGAATTG---C----------------ATGTGTGTC------GGTG--..................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGA--GTCT---TCCTTGG------ACT--TTTTTCCCAGG..........................................................3011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGG------ACT--TTTTTCCC.............................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................ACAGGTATTTT------TGTGTGCGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCCAGCAATTTGCGAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................GATTGTGCGATTGTGACCCATT.........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................GTC------GGTG--AACTGGGAAGG-G-GT..................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
droEre2
AGGTGAAGGCGTCGCCATCGAAGTTCCAGCAATTTGCGAATGCTGCACAGGTATTTT------TGGGTGCGGGG--GCGG-GGCG-------G-----CTTGTCAATGAAAAATGCAAATTGAGGAAAACATA-CGCACACAGACA---C-----------GGAATTG---C----------------ATATGTGTC------GGTG---------AAGG-G-GTCCC-----------------------------------------------CAATGGTGCGATTGTGACCCAAATCTGGG----------TG--------CACAAATGAAGGGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGA--CTCT---TCCTTGC------CCT--TTTTTCCCAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---AACGAACACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................ATTG---C----------------ATATGTGTC------GGTG---------AAGG-G-GT..................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
........................................................................................................................................................................................................................................................................................................AATCTGGG----------TG--------CACAAATGAAGG...................................................................................................................................................................................................................................................2211.0010000100
.......GGCGTCGCCATCGAAGTTCCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---TCCTTGC------CCT--TTTTTCCCAG...........................................................2211.0011000000
droYak3
AGGTGAAGGCGTCGCCATCGAAGTTCCAGCAATTTGCGAATGCTGCACAGGTATTTT------TGGGTGCGGGG--GCGG-GGCG-------G-----GTTGCCGATGAAAAATGCAAATTGAGGAAAACATA-CGCACACAGACA---C-----------GGAATTG---C----------------ATGTGTATG------GGTG--AACTGGGAACGGG-GTCGC-----------------------------------------------CAATAGTGCGATTGTAACCCATTTCTGGC----------TG--------CACAAGTGAAGTGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGA--TTCT---TCCTTGC------CCT--TTTTTCCCAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---AACTAACACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................T------TGGGTGCGGGG--GCGG-GGCG-------G-----GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT---TCCTTGC------CCT--TTTTTCCCAG...........................................................2311.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTCGAGCACAACA---CCCA---...................2111.00101000000000
........................................................T------TGGGTGCGGGG--GCGG-GGCG-------G-----GTTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
........................................................T------TGGGTGCGGGG--GCGG-GGCG-------G-----G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
........................................................T------TGGGTGCGGGG--GCGG-GGCG-------G-----GTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
droEug1
AGGTGAAGGCGTCGCCATCGAAATTCCAGCAATTTGCGAATGCTGCACAGGTATTTA-------CAATGCGGTG--GCGG-GGTG-------G---GAGGTGTCAAAGAAAAATGCAAATTA-GGAAAACATA-CAAACACCGATA---A-----------GGCTTTA---C----------------ATATGTGTT------TGTAA-GACTGGGAAGG-G-CTCCG-----------------------------------------------ATATAGTGCATTTGTGACCCATTTCTGGG----------CA--------GAGAATTGAAGGGACCAGCTGT---------------------------------------------------------------------------------T--------------------------------------------------AATGGGAATTT--------G-------ACC--ATTTTTCTAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---CACCAACACSizeHit CountTotal NormTotal
No Reads
droBia1
AGGTGAAGGCGTCGCCGTCGAAATTCCAGCAGTTTGCGAATGCTGCACAGGTATTTT------ATAGGGCGGAGGGGCGG-GGCG-------G------GTGCCGATGAAAAATGCAAATTAAGCAAAACATA-CGCACACCGACA---GGGATTGG----G--ATTG---T----------------TCGTGTGTG------GGTTG-AGCTGGGAAGG-G-TTCGG-----------------------------------------------AAATAGTGCAATTGTGTCCCATTTCTGGGGAGGGGGAGGAGGAGAAGGAGACAAGTGAAGTGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------C----------------------------T--GCTTTTCTAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---TACGAACACSizeHit CountTotal NormTotal
No Reads
droTak1
AGGTGAAGGCGTCGCCGTCGAAATTCCAGCAATTTGCGAATGCAGCACAGGTATTTA------TTGGAGCGGGG--GGTGGGGCT-------T-----TGTACCGATGAAAAAAGCAAATTAAGGAAAACATA-CAAACACCGATGGA-T-----------GGGATTG---C----A--CATGT----ATATGTGTA------TGTGTAGGTAGCGAAGG-G-TTCTG-----------------------------------------------AAATAGTGCACAGGTGACCCATTTCTCGGGGGG------AA--------GACA-----AATGAACAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGA--CTTT---TTCTATT------CAA--TTTTTTCTAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---AACGAGCACSizeHit CountTotal NormTotal
No Reads
droEle1
AGGTGAAGGCGTCGCCGTCGAAATTTCAGCAATTTGCGAATGCTGCACAGGTATTTT-----GTGGGTGCGAGG--GCGGGGGCG-------A-----GGTGCCGATGAAAAATGCAAATTAAGAAAAACATA-CGCACACCGACA---C-----------G--ATTG---T----------------CTGTGTGTT------TGTGG-TGCTGGGAGGGGG-GTCGA-----------------------------------------------AAATAGTGCAATTGTGACCCATTTGTGGG----------GT--------GACAAGTGAAGGGAACAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGG--CTTT---GGCTT----------T--TCCCTTCTAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---CACGAACACSizeHit CountTotal NormTotal
No Reads
droRho1
AGGTGAAGGCGTCGCCGTCGAAATTCCAGCAATTTGCGAATGCTGCACAGGTATTTTAGG--GTTGGTGCGGGG--G------AG-------G-----TGTGCGGATGAAAAATGCAAATTAAGGAAAACATA-CGCACACCGACA---T-----------G--ATTG---T----------------TTGTGTGCT------TGTAA-TGCTGGGAAGG-G-GTCGG-----------------------------------------------AAATAGTGCAATTATGACCCATTTCTCTCGA--------CA--------GACAAGTAAAGTGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CATGG--CTTT--------GG------TC---TTTTTTCTAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---CACGAACACSizeHit CountTotal NormTotal
No Reads
droFic1
AGGTGAAGGCGTCGCCGTCGAAATTCCAACAATTTGCGAATGCTGCACAGGTATTGCAT----TGGGT-CGGTG--GAAG------------G-----GGTGCAGATGAAAAATGCAAATTAAGAAAAACATA-CGCACACCGACA---CGATT------------TG-T-T----------------TTGTGTATT------TGTTC-GGCTAGGAAGG-G-GTCGG-----------------------------C-----------------AAATAGTACTATTGTGACCCATTTCTGGG----------AA--------GACAAGTGAAGTGACCAGCTGC---------------------------------------------------------------------------------T--------------------------------------------------CACGG--CTCTGTTTTCTTTT------ACTTCTCTTTTCTAGGCCGCCGTGAGCTCATCGTCGAGCACAACA---CCCA---ATTCGGA---CACGAACACSizeHit CountTotal NormTotal
No Reads
droKik1
AGGTGAAGGCGTCGCCGTCCAAATTCCAGCAATTTGCGAATGCTGCACAGGTATTGCAGTTTGTGGGTG--GAG--GGTG-AAAGCAACGAAGAGGGAGGT-----GTAAAAATGCAAATTAACGAAAACATA-CGCAAATTCGTA---GTATTTGA-----------GTGT----------AT----ATATGTGTG------TGTGG-AGCTGGGAAAATG-ATT-G----------------------------A------------------AATAGGTGCAACTGTGACCCATTTGGGGA----------GA-----------------A---A---------------------------------------------------------C-CCCCAGGAAACCAGACA--GC------TGTCG--------CA----------------AA------AACACACT-------CATA----------------TAATTCGGCA--ATCTTTCTAGGCCGCCGTGAGCTCATCGTCGAGCACAACG---CCAA---CTTCGGA---GACGAACACSizeHit CountTotal NormTotal
No Reads
droAna3
AGGTGAAGGCGTCCCCCTCGAAATTTCAGCAATTTGCGAATGCTGCCCAGGTACTTT------CTCGTTAGGAG--GGGA-TGCG-------G------GGTCAGATGAAAAGTGCAAATTAAGAAAAACATAACGCACACAATCAAAACAGTAGCA-CCGAGAGGTG---T----------------ATGTGTGCG------GGGG--AACTGAGAAAGTG-ATT-T-----------------------------------------------TTATTGTCC-ATTTTGACCCATTTCAGTG--------------------GACC--TGATAGAGCCAGCTGC---------------------------------------------------------------------------------TG--------CA--------------CTT------------ACT-------CAC-----T-----------TATTT--CCA--TTCCTTTCAGGCCGCCGTGAGCTCATC---GAGCACAACA---CCCA---ACTCGGA---CTCGAACAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---CCCA---ACTCGGA---CTCGAA...2111.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCACAACA---CCCA---ACTCGG.............2011.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA---CCCA---ACTCGGA---CTC......2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGTGAGCTCATC---GAGC...................................1911.001010000
..............................AATTTGCGAATGCTGCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
AGGTGAAGGCGTCACCCTCGAAATTTCAGCAATTTGCGAATGCTGCCCAGGTACTTT------CTCGTTGGGAG--GGGA-TGCG-------G------GGGCAGCTGAAAAGTGCAAATTAAGAAAAACATAACGCACACAATCAAAAC-----------AGACT----GCGTGC------------ATGTGT----------GGGG-GACTGGGAAAGTG-ATTTT-----------------------------------------------C-ATTGC-CCATTTCGACCCATTTCAGGG----------AA--------CCCA-ATAAAG---CCAGCTGC---------------------------------------------------------------------------------TG--------CA--------------CTT------------ACT-------CATT----------------TGTTT--GCT--TTCGTTTTAGGCCGCCGTGAGCTCATC---GAGCACTACA---CCCA---ACTCGGA---CTCCAACACSizeHit CountTotal NormTotal
No Reads
dp5
AGGTGAAAGCGTCACCATCCAAATTCCAACAATTCGCGACTGCTGCACAGGTAGG-----------------GG--GGGG----------------------GGAAAGAAAAATGCAAATTGATGAAAACATA-CGCAGGCAAAAA---CAATCTCA-----------GTGT----------------GTGTGTGTG------TGTGA-AATTGAGCAAGTGGAGCGG-----------------------------C----------A-T-----GAAAATGCATTTTTGACCCATTTCCACT----------ATCATAA-TAGACA--T--TATGGCCAGCTGCTGG----------------CCTAGCAC--------------------AGC-ACCCAGGAAAAC--------C------TT--G--------CA--------------CTAACACACATTCCCGCACATGCCTAATGA--CTC--------------------------TTGCAGGCGGCCGTGAGCTCATCGACGAACACAACA---CCAAACAGCTCTGA---CACCAACACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................TGAGCAAGTGGAGCGG-----------------------------C----------A-T-----GA.............................................................................................................................................................................................................................................................................................................2112.0020200000000
...............................................................................................................................................................................................................A-AATTGAGCAAGTGGAGCGG-----------------------------..................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................AA-TAGACA--T--TATGGCCAGCTG..........................................................................................................................................................................................................................................2111.0010100000000
......AAGCGTCACCATCCAAATTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................GCAAGTGGAGCGG-----------------------------C----------A-T-----GA.............................................................................................................................................................................................................................................................................................................1811.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCTCATCGACGAACACA................................2111.0010100000000
.......................................................................................................................TTGATGAAAACATA-CGCAGGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.............................................................................................................................................................................................TGTGTGTG------TGTGA-AATTGAGC..........................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................TGTG------TGTGA-AATTGAGCAAGT......................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................ATTCCAACAATTCGCGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....GAAAGCGTCACCATCCAAATTCCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
............................................................................................................................................................A-----------GTGT----------------GTGTGTGTG------TGTGA-AAT...............................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
...TGAAAGCGTCACCATCCAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................ATTGAGCAAGTGGAGCGG-----------------------------C----------A-.....................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGCCGTGAGCTCATCGACG......................................2211.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATGA--CTC--------------------------TTGCAGGCGG.......................................................2011.0010100000000
droPer2
AGGTGAAAGCGTCACCATCCAAATTCCAACAATTCGCGACTGCTGCACAGGTAGG---------------------G----------------------GGGGAAAGAAAAAATGCAAATTGATGAAAACATA-CGCAGGCAAAAA---CAATCTCA-----------GTGT----------------GTGTGTGTG------TGTGA-AATTGAGCAAGTGGAGCGG-----------------------------C----------A-T-----GAAAATGCATTTTTGACCCATTTCCACT----------ATCATAA-TAGACA--T--TATGGCCAGCTGCTGG----------------CCTAGCAC--------------------AGC-ACCCAGGAAAAC--------C------TT--G--------CA--------------CTAACACACATTCCCGCACATGCCTAATGA--CTC--------------------------TTGCAGGCGGCCGTGAGCTCATCGACGAACACAACA---CCAAACAGCTCGGA---TACCAACACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACA---CCAAACAGCTCGGA---T........2212.002200000
......................ATTCCAACAATTCGCGACTGCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACACAACA---CCAAACAGCTCGGA---.........2411.001001000
droWil2
AGGTGAAGGCGTCGCCGTCCAAATTTCAACAATTCGCAAATGCGGCTCAAGTAAG---------------------GCAG-AGAA-------A-------ATCGAATAGAAAATTCATAAAAATGAAAACATA-CGCACACCAATA---CAATCGCTACC------T-ATGTGCGC------------GTGTGTGTG------AGTG--T-----ATGGGTGGAATGACTAGGACTGGGAGTGGAAGAAAAAATAGC------------------AACAATTGCAATTTTGACCCATTTTC-----------------------------TTAAATGCCCAGCTGCTGT----------------TAAAGTCGCAAAAAGAAAATTAAAAGGAAGCATCCCAAGAAATC--------C--------------------A--------------CTA---------------------TAACGA--CTCT---TA------------CC--TGTTTTTTAGGCCGCTGTGAGCTCATCATCATCCAGCACA---CCCAACAGTTCCGA---CACCAATACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................GTGTGTG------AGTG--T-----ATGGGTGGAAT.................................................................................................................................................................................................................................................................................................................................................................2311.00100001
.......................................................................................................................................................................................................................ATGGGTGGAATGACTAGGACT.......................................................................................................................................................................................................................................................................................................................................................2111.00110000
..............................................................................................................................................AATA---CAATCGCTACC------T-ATGTGCGC------------GT.....................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
............CGCCGTCCAAATTTCAACAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
droVir3
AGGTGAAAGCGTCGCCGTCCAAATTCCAACAATTTGCAAATGCAGCCCAGGCAAGTA-----------------------------------------------ACAAAAAAGTGCAAATTAATAAAAACATA-CGCACACAAGCAAA-CTGTT---GGC------T-GTGTGTGCG--TGTGT----ATGTAGGTATGTGTCTGCTT-AACGGGCAAAG-G-GATGC--------------------ACCCA-AACAGCCAGTGCAATTTTCAAAAATTGTTTT-ATTTGACCCATTTAAC----------------------------AGAAACAAGCAGCTGT---GTGCACACCCAACCCCCCAAGCGC--------------------A----CTC--------ATACA-----CAATCAC--ACCGCATGACACACACACACACACACACACGCACACACACACACATA---CATGA--CTTT---TA-TCGG------TAT--GCTTTTATAGGCCGCCGTGAGCTCATCGTCCAGCACAACAACACCGAACAGCTCGGAGAATACCGACACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................AAAG-G-GATGC--------------------ACCCA-AACAGC...............................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--ACCGCATGACACACACA......................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACAACAACACCGAACAG..................2011.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGCTCGGAGAATACCG....2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---TA-TCGG------TAT--GCTTTTA..............................................................1911.001000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACACACACATA---CATGA--CTT...........................................................................................2420.501000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................AACCCCCCAAGCGC--------------------A----CTC--------TAG.......................................................................................................................................................................2120.501000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACACACGCACACACA................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
AGGTGAAAGCGTCGCCGTCCAAATTCCAACAATTTGCAAATGCAGCCCAGGCAAGA----------------------------------------------TAGAAAAAAAATGCAAATTAATGAAAACATA-CGCACACAAACAAA-CTGT------------TTG---TGTGTGTGTGTGTTAACTAGTGTGTGTGTGTTTGTCC-TAATGGGGAGGTG--ATGC--------------------GTCCAAAACAGTCAATGCAATTGGATAGTTCTATTT-AATTTGACCCATTTGAA----------------------------TGAAACTGGCAGCTGG---GTGCACACCCAACCCCCCTAGCAC--------------------A-C-ACCC--------ATACACAACACAATCAC--GCCGCATGACA----------------------CACACACACACATGCAA-GGGA--ATTT---TA-TCGG-TTT--GC---TTTATTGTAGGCCGCCGTGAGCTCATCGTCCAGCACAACAACACCAA---GCTCAGAGAATACCGATACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................AAAACATA-CGCACACAAACAAA-CTGT------------T.............................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
..................................................................................................................................................AA-CTGT------------TTG---TGTGTGTGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................2040.251000001
droGri2
AGGTGAAAGCGTCGCCGTCCAAATTCCAACAATTTGCAAACGCAGCCCAGGCAAGAA-----------------------------------A-----CAGACAGAAAAAAAATGCGAATTAACGAAAACATA-CGCACACAAACA---A-----------GCAGT--ATGT----------------GTGTGTGTC------TATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:52 PM