ID:

dsi_7516

 Coordinate:

3r:10749220-10749369 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-25.1 -24.7 -24.7

Flybase annnotation

Antisense to intron [3r_10742713_10749585_+]

No Repeatable elements found

Sense Strand Reads

AAGTTGTGCAAAATACAAAATAAAATCGGAATTTAAATTCGACCAGATATCAAAGATGGCAATGTGTCGTGTTTAAAAATGGTTTGCTTATCCATTTCTGTGATGTATAATCATCTTTTGCCGAATGGCTTTACATTTATTTCCTATAAATAATCTGCAAAAAGAGACTTCAGATAGTAAATACATTTTTTCCTCTTTAGGAACCCTGATATACACGCTAAAGGGTTACGATCCGGACAACGATCCGCTG
**************************************************.(((.((((((...)))))).)))((((((((((((((.(((.......(((((.....))))).....(((....))).....((((((.....))))))..(((......))).......)))))))))).)))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
...............................................................................................................................................................................................................................GGTTTTGATCCGGACAAC......... 18 2 7 1.14 8 0 4 3 0 1 0 0
...............................................................................TGGGCTGCTTATCCATTTCTG...................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
..............................................................TGTGTCGTGTTTAAAAATGGTTTGCT.................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
.............TACAAAGTAAAATCGGAGCTTAAA..................................................................................................................................................................................................................... 24 3 2 0.50 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................GGTTTTGATCCGGACAACC........ 19 3 19 0.21 4 0 2 2 0 0 0 0
................................................................TGTCGTGTTTAAAACT.......................................................................................................................................................................... 16 1 8 0.13 1 0 0 0 0 0 1 0
.............................................................ATCTGTCGTGTTAAAAAA........................................................................................................................................................................... 18 2 16 0.06 1 0 0 0 1 0 0 0
...............................................................ATGTCGTGATTGAAAATGG........................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0
.............................................................................AATGGTTGGCTAATCCA............................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 1
.............TACAAAATAAAACCGGG............................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

TTCAACACGTTTTATGTTTTATTTTAGCCTTAAATTTAAGCTGGTCTATAGTTTCTACCGTTACACAGCACAAATTTTTACCAAACGAATAGGTAAAGACACTACATATTAGTAGAAAACGGCTTACCGAAATGTAAATAAAGGATATTTATTAGACGTTTTTCTCTGAAGTCTATCATTTATGTAAAAAAGGAGAAATCCTTGGGACTATATGTGCGATTTCCCAATGCTAGGCCTGTTGCTAGGCGAC
**************************************************.(((.((((((...)))))).)))((((((((((((((.(((.......(((((.....))))).....(((....))).....((((((.....))))))..(((......))).......)))))))))).)))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR902009
testis
..................................................................................................................................................................................................................................ATGCTAGGCCTGATGCTA...... 18 1 1 4.00 4 4 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GCTAGGCCTGATGCTA...... 16 1 2 4.00 8 7 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACGCTAGGCCTGATGCTA...... 18 2 4 3.50 14 3 2 1 3 2 2 0 1 0
......................................................................................................................................................................................................................................TAGGCCTGATGCTAGCCGA. 19 2 2 3.00 6 2 1 0 0 1 1 0 0 1
...................................................................................................................................................................................................................................TGCTAGGCCTGATGCTA...... 17 1 1 2.00 2 0 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CTAGGCCTGATGCTA...... 15 1 10 1.10 11 3 1 2 4 0 0 1 0 0
..................................................................................................................................................................................................................................ACGCTAGGCCTGATGCT....... 17 2 9 1.00 9 4 5 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GCTAGGCCTGATGCTAGCCGA. 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................GGCTTACCGAAATGTAAATAAAGGAT........................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTTAGGCCTGATGCTAGCCGA. 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TAGGCCTGATGCTAGCCG.. 18 2 5 0.80 4 2 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACGCTAGGCCTGATGCTAGCC... 21 3 4 0.75 3 1 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................AGGCCTGATGCTAGCCGA. 18 2 5 0.60 3 0 2 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................GGCCTGATGCTAGCCGA. 17 2 14 0.57 8 0 7 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTTAGGCCTGATGCTAGCCG.. 20 3 7 0.57 4 0 3 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................AGGCCTGTTGCTAGCCG.. 17 1 2 0.50 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATGCTAGGCCTGATGCTACGT... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACGCTAGGCCTGATGCTAG..... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATGTTAGGCCTGATGCTATG.... 20 3 4 0.50 2 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................AGGCCTGATGCTAGCCG.. 17 2 14 0.43 6 4 0 1 1 0 0 0 0 0
......................................................................................................................................................................TGAAGTCTATCATCTAT................................................................... 17 1 3 0.33 1 0 0 0 0 0 0 1 0 0
.........................AGCCTCAAATTTAAGATGG.............................................................................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................TAGGCCTGATGCTAG..... 15 1 19 0.32 6 1 1 1 2 0 0 0 0 1
....................................................................................................................................................................................................................................GCTAGGCCTGATGCT....... 15 1 11 0.27 3 0 3 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TAGGCCTGTTGCTAGC.... 16 1 4 0.25 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATGCTAGGCCTGATGCTG...... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CTAGGCCTGATGCTAG..... 16 1 4 0.25 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................TAGGCCTGTTGCGAG..... 15 1 4 0.25 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATGCTAGGCCTGATG......... 15 1 10 0.20 2 0 2 0 0 0 0 0 0 0
................................................................................................................................................................TGTCTCTGACGTCTATCA........................................................................ 18 2 5 0.20 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................TGCTAGGCCTGATGCT....... 16 1 5 0.20 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TAGGCCTGATGCTAGTCG.. 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................TAGGCCTGATGCTATCCGA. 19 3 20 0.15 3 1 0 2 0 0 0 0 0 0
...........................................................................................................................................AAAGGAGATTTATTAG............................................................................................... 16 1 7 0.14 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................AGGTTAGGCCTGTTGCTA...... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CTAGGCCTGATGCTAGCC... 18 2 8 0.13 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................AGAAGAAATCCTTGAGA........................................... 17 2 19 0.11 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TAGGCCTGATGCTAGCCGC. 19 3 19 0.05 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GATGCTAGGCCTGATGC........ 17 2 19 0.05 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGGGAGTATATGTACGGT.............................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................TAGGCCTGTTGCGAGC.... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GGCTTAGCGAAATATAA................................................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Generated: 04/24/2015 at 10:48 AM