ID:

dsi_7510

 Coordinate:

3r:9893250-9893399 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.2 -27.8 -27.4 -27.4

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_7510  3r:9893375-9893392 +
  2. node_25410:165-182 +
star

Sense Strand Reads

ATCGCTTTTACTCGCATTTTGTATCTGCGGAATTGAAGCAATTACATTACCCAGGCTGCCGGAAAATTTGCAGGATTTTAAATGTCAGGAGGACGATGTTGGATTTAAGTTCAACTTAACAGATGTAAGAAAGGTCCTAGGATAACTAGATTCCAACACTGAAAACTCCTGTCTGATAATTATCATTGATTTTTTTTTAGTTAGCCGGCACCTGGTATGAGGCTCTCCGAGTGCCCAGTGTCCCGGGAAT
**************************************************.....((.......((((.....((...(((.(((((((((((((.(((((((.((.((((...((((...(((.........))).))))..)))).)).))))))).)).....)))).))))))).)))))...)))).......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 O001
Testis
 O002
Head
 SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
..................................................................................................................................................................................ATTATCATTGATTTTTGT...................................................... 18 1 4 2426.75 9707 4032 5220 270 83 31 18 16 17 16 1 2 1 0
...............................................................................................................................................................................ATAATTATCATTGATTTTTGT...................................................... 21 1 2 417.50 835 700 90 0 1 17 9 4 5 7 1 0 0 1
.................................................................................................................................................................................AATTATCATTGATTTTTGT...................................................... 19 1 2 241.00 482 404 45 0 3 5 11 5 5 3 0 1 0 0
...............................................................................................................................................................................ATAATTATCATTGATTTTTG....................................................... 20 1 3 35.33 106 11 90 0 0 2 3 0 0 0 0 0 0 0
................................................................................................................................................................................TAATTATCATTGATTTTTGT...................................................... 20 1 2 34.00 68 68 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTATCATTGATTTT......................................................... 18 0 2 14.00 28 19 0 0 0 2 5 0 1 0 1 0 0 0
..................................................................................................................................................................................ATTATCATTGATTTTTTT...................................................... 18 0 1 10.00 10 10 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTATCATTGATTTTT........................................................ 19 0 2 7.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTATCATTGATTTTTGTTT.................................................... 20 1 1 5.00 5 3 0 0 0 0 0 0 0 2 0 0 0 0
...................................................................................................................................................................................TTATCATTGATTTTTGT...................................................... 17 1 5 4.80 24 0 0 0 1 0 0 17 5 0 1 0 0 0
...............................................................................................................................................................................ATAATTATCATTGATTTTTTT...................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTATCATTGATTTTTGTT..................................................... 19 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTATCATTGATTTTTTTGT.................................................... 20 1 2 2.50 5 3 0 0 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................ATTATCATTGATTTTTGTTTATT................................................. 23 2 3 2.33 7 7 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTATCATTGATTTTTT....................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTATCATTGATT........................................................... 16 0 2 1.50 3 0 0 0 0 0 0 3 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTACCATTGATTTTTGT...................................................... 21 2 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TATCATTGATTTTTGT...................................................... 16 1 20 1.15 23 0 0 0 0 0 0 12 6 0 4 0 1 0
...............................................................................................................................................................................ATAATTATCATTGATTTTTGC...................................................... 21 2 3 1.00 3 1 0 0 0 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................AGAATTATCATTGATTTTTGT...................................................... 21 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TACATTACCCAGGCTGCCGGA........................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TAATTATCATTGATTTTTGTT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTATCATTGATTTTTGTTTATT................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GATAATTATCATTGATTTTTGT...................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTATCATTGATTTTTTTTT.................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTATCATTGATTTTTTG...................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTATCATTGATTTTGT....................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TAATTATCATTGATTTTTG....................................................... 19 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTATCATTGATTTTTGTTTATT................................................. 22 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAACTATCATTGATTTTTGT...................................................... 21 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATACTTATCATTGATTTTTGT...................................................... 21 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTATCATTGATTTTTGTTTT................................................... 21 2 6 0.67 4 4 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATGATTATCATTGATTTTTGT...................................................... 21 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTATCATTGATTTTTGTAT.................................................... 20 2 7 0.57 4 3 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTATCATTGATTTTTCT...................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTATCATTGAT............................................................ 15 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................AATTATCATTGATTTTTTGT..................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TAATTATCATTGATTT.......................................................... 16 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................ATTCTCATTGATTTTTTT...................................................... 18 1 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TAATTATCATTGATTTTTGGT..................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AATTATCATTGATTTTTCT...................................................... 19 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TATAATTATCATTGATTTTTGT...................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTATAATTGATTTTTGT...................................................... 21 2 12 0.33 4 4 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTATCATTGATTTTTTTG..................................................... 19 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ACAATTATCATTGATTTTTGT...................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTATCATTGATTTGT........................................................ 19 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TAATTATCATTGATT........................................................... 15 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................TTATCATTGATTTTTGTGTA................................................... 20 2 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................ATTATCATTGATTTTTGTGTA................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAGTTATCATTGATTTTTGT...................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTATCATTGATTTTTGGTT.................................................... 20 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CTATAATTATCATTGATTTTTGT...................................................... 23 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................GAATTATCATTGATTTTTGT...................................................... 20 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATGATCATTGATTTTTGT...................................................... 21 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AATTATCATTGATTTTTG....................................................... 18 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AATTATCATTGATTTT......................................................... 16 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................AAAATTATCATTGATTTTTGT...................................................... 21 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CAATTATCATTGATTTTTGT...................................................... 20 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTATCATTGGTTTTTGT...................................................... 21 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................TATTATCATTGATTTTTGT...................................................... 19 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTATCATTGATTTTTGTCT.................................................... 20 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATTATTATCATTGATTTTTGT...................................................... 21 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................ATAATTATCATTGATA........................................................... 16 1 15 0.13 2 0 0 0 0 0 0 0 0 0 2 0 0 0
................................................................................................................................................................................AAATTATCATTGATTTTTGT...................................................... 20 2 15 0.13 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTAATTATCATTGATTTTTGT...................................................... 21 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................ATCATTGATTTTTGTTT.................................................... 17 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................ATTATCATTGATTTTTGTTTTATT................................................ 24 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTCTCATTGATTTTTCTTTA................................................... 20 2 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................GGCAATTATCATTGATTTTTGT...................................................... 22 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTATCATTTATTTTTGT...................................................... 21 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AATTATCATTGATGTTTGT...................................................... 19 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AAGTATCATTGATTTTTGT...................................................... 19 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................CGATGTTGGATTAAA.............................................................................................................................................. 15 1 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTATCATTGATTTGTGTTTAT.................................................. 22 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AATTCCTTTACCCAGGCGG................................................................................................................................................................................................ 19 3 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................AATTATCATTGAGTTTTGT...................................................... 19 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................ACTGAATTCTCGTGTCTGA.......................................................................... 19 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................ATAATTATAATTGATTTTT........................................................ 19 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTCTCATTGATTTTTTTTTT................................................... 21 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTATCATTGATCTTTGT...................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGGCCGATGTTGGATT................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................ATTATCATTGAATTTTGT...................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AATTATCATTGATATTTGT...................................................... 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GTAAGAGCCTCACCGAGT.................. 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTATCACTGATTTTTGT...................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTATCATTGATTCTTGT...................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ACTATCATTGATTTTTGT...................................................... 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTACCATTGATTTTTGT...................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTCCAACACCGAAAA..................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................TTTGAAATGTCAGGA................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTATCATCGATTTTTGT...................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AATTATCATTGATTTTTGC...................................................... 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAGCGAAAATGAGCGTAAAACATAGACGCCTTAACTTCGTTAATGTAATGGGTCCGACGGCCTTTTAAACGTCCTAAAATTTACAGTCCTCCTGCTACAACCTAAATTCAAGTTGAATTGTCTACATTCTTTCCAGGATCCTATTGATCTAAGGTTGTGACTTTTGAGGACAGACTATTAATAGTAACTAAAAAAAAATCAATCGGCCGTGGACCATACTCCGAGAGGCTCACGGGTCACAGGGCCCTTA
**************************************************.....((.......((((.....((...(((.(((((((((((((.(((((((.((.((((...((((...(((.........))).))))..)))).)).))))))).)).....)))).))))))).)))))...)))).......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 M053
female body
 O001
Testis
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
..........................................................................................................................................TCCTATTTCTCTAAGCTTG............................................................................................. 19 3 20 6.00 120 0 64 56 0 0 0 0 0 0
................................................................................................................................................................................................................GTGGACCATTCTCAGAGC........................ 18 3 20 4.05 81 81 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGGACCATACTCCGAGAGGCTCA.................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................CAACCTAAATTCAAGTTGAATTGTCTA.............................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................AAAAAAAATCAACCGGCCGT........................................ 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GTGGACCATTCTCAGAGA........................ 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAAAATCAATCGGCCGCTC...................................... 21 3 8 0.25 2 0 0 0 0 0 2 0 0 0
.......................................................................................................................................................AGGTTGTCACTTTTGAGCT................................................................................ 19 3 20 0.15 3 0 3 0 0 0 0 0 0 0
..................................................................................................................................................................................................AAAATCAAGCGGCCGT........................................ 16 1 8 0.13 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................AGGGTCACGGGTCACA......... 16 1 9 0.11 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................TGGACCATTCTCAGAGC........................ 17 3 20 0.10 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................TCAGGTTGTGACTTTGG.................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................TTTGAGGACAGACGAGTAC..................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................TTTTGAGGACTGACGAGTA...................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:9893200-9893449 + dsi_7510 ATCGCTTTTACTCGCATTTTGTATCTGCGGAATT------------GAAGCAATTACA------------TTACCCAGGCTG---------CCGGAAAATTTGCAGGATTTTAAATGTCAGGAGGACGATGT---TGGATTTAAGTTCAACTTAACAGATGTAAGAAAGGTCCTAGGATA---------------AC--TA-GATT--CC-----------------------------------------------------------------------------------------AACACTGAAAACTCC-T----------------------------------------------------------------------------------GTC--------TGATAATTATCATTGA-TTTTTTTTTAGTTAGCCGGCACCTGGTATGAGGCTCTCCGAGTGCCCAGTGTCCCGGGAAT
droSec2 scaffold_0:10609007-10609259 + ATCGCTTTTACTCGCATTTTGTATCTGCGGAATT------------GAAGCAATTACA------------TTACCCAGGCTG---------CCGGAAAATTTGCAGGATTTTAAATGTCAGGAGGACGATGT---TGGATTTAAGTTCAACTTAACACATGTAAGAAAGGTCCTAGGATA------------TAAAC--TA-GATT--CC-----------------------------------------------------------------------------------------AGCACTGAAAACTCC-T----------------------------------------------------------------------------------GTC--------TGATAATTATCCTTGA-TTTTTTTTTAGTTAGCCGGCACCTGGTATGAGGCACTCCGAGTGCCCATTGTCCCGGGAAT
dm3 chr3R:11335343-11335598 - ATCGCTTTTACTCGCATTTTGTATCTGCGGAATT------------GAAGCAATTACA------------TTACCCAGGCTG---------CCGGAAAATTTGCAGGATTTTAAATGTCAGGAAGACGATGT---TGGATTTAAGTTCAACTTAACAGATGTAAGAAAAGTCGTAGGATATATATTAC-------AA--TA-GTTT--CC-----------------------------------------------------------------------------------------CACACTGAAAAATC-CA----------------------------------------------------------------------------------GTC--------TGATAATTATTCTT---GATTTGTTTAGCTTGCCGGCACCTGGTATGAGGCTCTCCAAATGCCCAGTGTCCCGGGAAT
droEre2 scaffold_4770:10863118-10863387 - ATCGCTTTTACTCGCTATTTGTATCTGCGGAATT------------GAAGCAAATATA------------TTGCCCAGGCTG---------CCGGAGAACATACAGGATTTTAAATGTGAGGAAGACGATAT---TGGATTTAAGTTCAACTTAACAGACGTAAGAAAAGTCC------------------------AACGTTTAACGT-TGTAACGTTATACTAGGCGATAAT-----------------------------------------------------------------------T--------ATTTATATGACTCAAATCTGATGATTGATCTGAT----------------------------------------------------------------------------C-TGATTTCTAAGTTCGCCGGCGACTGGTACGAGACTCTCCAAATACCATATGTTCCGGGAGT
droYak3 3R:15092254-15092519 + ATCGCTTTTACTCGCTCTTTGTATCTGCGGAATT------------GAAGCAATTGTA------------TTGCCCAGGCTG---------CCGGAAAACATACAGGATTTTAAATGTGAGGACGACGATAT---AGGATTCAAGTTCAACTTAACAGATGTAAGAAGAGTCC------------------------ACCGTTAAGT-G-----ACGTTTTTTTAAACA-----------------------------------------------------------------------------------------------------------------------------------------------AATATAAATAAATATACATATCAGCTCTC--------TAATAATTGT---CGT-TTCTTTCCTAGTTCGCGGGCGACTGGTATGAGGCTCTGAGATTGCCCAATGTTCCGGGAAT
droEug1 scf7180000409281:12457-12706 + GACACTCTTCGTCGCTTTGAGTGTCTGTGGAGGT------------AAAGCCACAGCTAGTGTCCTTA------AGTTGCTG---------CCGGAAAACTTACAAGATTTCAAGTGCAACGACGAAGCCAT---AGGATTCAAACTCAACCTAACTGAAGTGAGAAAAATTGCATA-----------------TGA--TT-TTATCATA-----------------------------------------------------------------------------------------GAAACCTAGAACTTCTT-----------------------------------------------------------------------------------TT--------ATAAAACTTCCAT----TAATTTATCAGCTCGCCGGCTACTGGTACGAAGCTGCCCGGATTCCCAAGGTCCCAGT---
droBia1 scf7180000302136:933012-933262 - AACCATTTTATTCAGTTTATATTTTTGGGGAAGTACACC---TGTTGAAGCGAGTATT------------TCGCCCAGGCTA---------CCGGAAAACTTACAGGATTTTAAGTGCGAGGCCGATGATAT---TGGATTCGCCTTTAATCTGACAGCGGTGAGGAGAAAAT----------GCTGGAACAGTGCC--TT-GATT--GG-----------------------------------------------------------------------------------------AA-ACTA-AAAGTC-------------------------------------------------------------------------------------CTC------CG-----------AATTC-GTATCTTTCAGCTCTCTGGCTACTGGTACGAGGCTCTTCGAGTTCCCAATATCCAGGTGAC
droTak1 scf7180000415769:1824621-1824876 + AACTATTTTTATAGCCTTATTTTTCTGTGGAAGTCTACA---GGTGGAAGGGAA------TATCACCAAGTTGCCCAGGTTG---------CCGGAAAACATACAAGATTTAAAATGTGAGGCCGATGACAT---TGGATTCGGGTTTAACCTTACAGAGGTAGAAATAAAAA-----------------------A--CA-CTTT--GA-----------------------------------------------------------------------------------------TAAAATAAAAAATA-TT----------------------------------------------------------------------------------TTA--------TAAAAATAAT-GTTCC-TTATTTTTCAGCTTGCTGGCTACTGGTACGAGGCTATGCGAATTCCCAATGTTCAGGTGAC
droEle1 scf7180000491080:1105419-1105551 - A----TTTTGGCAGCCTTATGCATCTGCGGAAATTTATTGAGTGTTACCGGGAG------TCGCTTGAGGATGCCCATGTTG---------CCTGCGGCACTCGAAGGTTTTAGCTGCCGAAACGACAGCAT---CGGTTTCAACTTTAACCTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779997:134196-134280 + CTCAAGTCCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATATTCCCTAA-CTTTATTTAAGCTATCTGGCTACTGGTATGAGGCTGCCCGAGTGCCCAATCTCCAGGTACT
droFic1 scf7180000452523:693915-694193 - GACTCTTTTACTCGTCCTCTACTTCTTTATGAGTCCACT---TGTCGAGGCCAG------TGGGATTAACATTCCGAGGCTA---------CCGGAAAACTTACAAGATTTTAAGTGTGAAGAAGATGACAT---TGGTTTTCATTTTAACCTGACAGAGGTGGGAACCTAAA------------------------ACCGATAGAC-A------------------------------------------------------------------------------------------------------------------------------------ATCATATTTGGTTTCAAGCTAAATTTAAAAATATTTGCCTAAGTA------------------------TATAA-----ATTCT-AATTATTTTAGCTCGCTGGTTATTGGTACGAGGCCCTTCGAATTCCAAATGACCAGTCGAT
droKik1 scf7180000302639:1342569-1342911 + GACGTTGTTGCTCGCCCTCTGCTGCTGCGGAAGCCAATTGGAGGTTGGAGCGAG------TCGCTTGCTGAGCAGGATGATGCCCAGAGTGCCGGAA---------GGCTGGAGCTGTCAGAATGAAAACATAGGCGGATTCAGCATCAACCTGACTGAAGTAAGTAGCTAAT------------------------AAAGTGTAAAAA-AGAAAATCAAATCAAACTCACTATAATTTAGGAATTTGCAACTAATAATTAATTTGAATTAATTTAAAATAGTTTAAGAATCTGTA---TAG-------ATTA-CA----------------------------------------------------------------------------------AGC--------TTACAT--TTCCCCCT-TTCTTTTCCAGCTTTCTGGCTACTGGTTCGAGGTTGCCCGAGTGCCCAATGTCGATGTTCT
droAna3 scaffold_13340:15946478-15946726 - dan_3122 GGGGCTCTGGATCGCCCTATGCTTCGCCACAAACCC---GGAGGTTGAGGGGGC------CAGATTTAGAATGCCCAACTTG---------TCAGGGAATTTAAAATCTTGGAACTGCCAGGCGGACAACAT---TGGAACCCAGTTAAACTTGACAACCGTGAGTAACTACA------------------------TACATCTAAAAA-AAA-----------------------------------------------------------------------------------AAAAACACATAAAACTTATA---------------------------------------------------------------------------------------------T----------------GTAAATTATAGCTATCCGGGTATTGGTACGAAGCTGCCCGGGTACCCAACGTCGAAGTTAT
droBip1 scf7180000396708:4086789-4087031 + GGGGCTCTGGATCGCCATGTGCCTCGCCACAAATCCACTGGAGGTCGAGGGGGC------CAGATTTAGGATTCCCAGCTTG---------CCGGGGAATTTAAAATCGTGGAATTGCCAGGCCGACAACAT---TGGAACCCAGTTAAACTTGACAGCCGTGAGTGACTTTG-------------------------------TC----------------TACA----------------------------------------------------------------------AAGCC-------------------------------------------------------------------------------------------------CTCATAAAACT-----------AATTT-ATGAATTGTAGCTATCCGGGTATTGGTACGAAGCTGCCCGGGTACCCAACGTCGCGGTTAT
dp5 2:30327158-30327418 - GGCAGTTTTGGTCGCGCTCTGCCTCTGCGGCTTGCCACAGAGGACGGAAGCGGT------TCGCATGAAGATACCCCTCATA---------CCGGATCTACCAAAATCGTTTGACTGTCGGGCTGACAGCAT---TGGTATCACCTACAATCTGACAGCAGTAAGTAGGGATG------------------------AGCGCTGACC-C------------------------------------------------------------------------------------------CCCCCCAAAAATTTCTA---------------------------------------------------------------------------------------------TTCTAATTGCAATTGAGTTTCCCTGCAGCTCTCTGGCTTCTGGTACGAGGCTGCCCGCGTGCCGAATGTGGATGTGCT
droPer2 scaffold_6:5718714-5718979 - GGCAGTTTTGGTCGCGCTCTGCCTCTGCGGCTTGCCACAGAGGACGGAAGGGGT------TCGCATGAAGATACCCCTCATA---------CCGGATCTACCAAAATCGTTTGACTGTCGGGCTGACAGCAT---TGGTATCACCTACAATCTGACAGCAGTAAGTAGGGATG------------------------AGCGCTGACC-C-----CC--------------------------------------------------------------------------------ACCCCCCCCAAGAATTTCTA---------------------------------------------------------------------------------------------TTCTAATTGCAATTGAGTTTCCCTGCAGCTCTCTGGCTTCTGGTACGAGGCTGCCCGCGTGCCGAATGTGGATGTGCT
droWil2 scf2_1100000004902:2578113-2578316 + TTTA--------------------------------------------TGCAAATGCG-----------TATACCCGAAAGA---------TCGGACACTGCCCAAAGCTATAACTGTCAGAATGATGTATC---TGGATTTGCCTTCAATTTGTCTGCCGTAAGTATACATACATA-----------------GAT--TT-CATT--TA-----------------------------------------------------------------------------------------TAGATTAACAATT---------------------------------------------------------------------------------------TA------TA-----------ATTTT-ATGTTATTCAGTTGTCTGGCTATTGGTATGAGGCTGCTCGAGTGCCCAATCAGGACGTCTT
droVir3 scaffold_12855:4907044-4907100 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACAGCTGGCGGGCTACTGGTACGAGGCAGTCAGAGTGCCGAATGTGGATGTTAT
droGri2 scaffold_14906:9630590-9630641 - A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTCAGGTATTTGGTATGAGGCGGGCCGGGTACCTAATGAGGATGTTAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATCGCTTTTACTCGCATTTTGTATCTGCGGAATT------------GAAGCAATTACA------------TTACCCAGGCTG---------CCGGAAAATTTGCAGGATTTTAAATGTCAGGAGGACGATGT---TGGATTTAAGTTCAACTTAACAGATGTAAGAAAGGTCCTAGGATA---------------AC--TA-GATT--CC-----------------------------------------------------------------------------------------AACACTGAAAACTCC-T----------------------------------------------------------------------------------GTC--------TGATAATTATCATTGA-TTTTTTTTTAGTTAGCCGGCACCTGGTATGAGGCTCTCCGAGTGCCCAGTGTCCCGGGAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTATCATTGA-TTTTTG.......................................................20335.331060231190000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTATCATTGA-TTTT.........................................................18214.0028025190010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCATTGA-TTTTTTT......................................................18110.0010000100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTATCATTGA-TTTTT........................................................1927.0014000140000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTATCATTGA-TTTTTTT......................................................2114.00400040000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTATCATTGA-TTTTTT.......................................................2012.00200020000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTATCATTGA-TT...........................................................1621.50300000000300000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTATCATTGA-TTTTTGC......................................................2131.00301110000000000000
......................................................TACA------------TTACCCAGGCTG---------CCGGA.......................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCATTGA-TTTTTTTTT....................................................2011.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTATCATTGA-TTTTTTG......................................................2111.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TAATTATCATTGA-TTTTTG.......................................................1930.67200020000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTATCATTGA-T............................................................1520.50100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TAATTATCATTGA-TTT..........................................................1620.50100000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCATTGA-TTTTTTTG.....................................................1930.33100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TAATTATCATTGA-TT...........................................................1530.33100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATTATCATTGA-TTTTTG.......................................................1850.20100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATTATCATTGA-TTTT.........................................................1650.20100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTATCATTGA-TA...........................................................16150.13200000020000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATTATCATTGA-TTTTTGC......................................................19200.05100010000000000000
droSec2
ATCGCTTTTACTCGCATTTTGTATCTGCGGAATT------------GAAGCAATTACA------------TTACCCAGGCTG---------CCGGAAAATTTGCAGGATTTTAAATGTCAGGAGGACGATGT---TGGATTTAAGTTCAACTTAACACATGTAAGAAAGGTCCTAGGATA------------TAAAC--TA-GATT--CC-----------------------------------------------------------------------------------------AGCACTGAAAACTCC-T----------------------------------------------------------------------------------GTC--------TGATAATTATCCTTGA-TTTTTTTTTAGTTAGCCGGCACCTGGTATGAGGCACTCCGAGTGCCCATTGTCCCGGGAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
ATCGCTTTTACTCGCATTTTGTATCTGCGGAATT------------GAAGCAATTACA------------TTACCCAGGCTG---------CCGGAAAATTTGCAGGATTTTAAATGTCAGGAAGACGATGT---TGGATTTAAGTTCAACTTAACAGATGTAAGAAAAGTCGTAGGATATATATTAC-------AA--TA-GTTT--CC-----------------------------------------------------------------------------------------CACACTGAAAAATC-CA----------------------------------------------------------------------------------GTC--------TGATAATTATTCTT---GATTTGTTTAGCTTGCCGGCACCTGGTATGAGGCTCTCCAAATGCCCAGTGTCCCGGGAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................TTTAAATGTCAGGAAGACGATGT---TG..............................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000002000000000000
..............................................................................................................TTAAATGTCAGGAAGACGATGT---TG..............................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002000000000
.........................................................................................................GGATTTTAAATGTCAGGAAGACGATGT---TG..............................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................TTTGCAGGATTTTAAATGTCA...............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................................................................................TTTTAAATGTCAGGAAGACGATGT---TG..............................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........ACTCGCATTTTGTATCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TTTAAATGTCAGGAAGACGATGT---TGG.............................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCCCAGTGTCCCGGGA..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
................................................................................................................AAATGTCAGGAAGACGATGT---TG..............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................ATGTCAGGAAGACGATGT---TG..............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
....................................................................................................TTGCAGGATTTTAAATGTCAG..............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.....................TATCTGCGGAATT------------GAAGCAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................GGATTTTAAATGTCAGGAAGACGATGT---................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................GACGATGT---TGGATTTAAGT.....................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................ATGTCAGGAAGACGATGT---TGGA............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................GTATCTGCGGAATT------------GAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTTGTATCTGCGGAATC------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATCGCTTTTACTCGCTATTTGTATCTGCGGAATT------------GAAGCAAATATA------------TTGCCCAGGCTG---------CCGGAGAACATACAGGATTTTAAATGTGAGGAAGACGATAT---TGGATTTAAGTTCAACTTAACAGACGTAAGAAAAGTCC------------------------AACGTTTAACGT-TGTAACGTTATACTAGGCGATAAT-----------------------------------------------------------------------T--------ATTTATATGACTCAAATCTGATGATTGATCTGAT----------------------------------------------------------------------------C-TGATTTCTAAGTTCGCCGGCGACTGGTACGAGACTCTCCAAATACCATATGTTCCGGGAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
ATCGCTTTTACTCGCTCTTTGTATCTGCGGAATT------------GAAGCAATTGTA------------TTGCCCAGGCTG---------CCGGAAAACATACAGGATTTTAAATGTGAGGACGACGATAT---AGGATTCAAGTTCAACTTAACAGATGTAAGAAGAGTCC------------------------ACCGTTAAGT-G-----ACGTTTTTTTAAACA-----------------------------------------------------------------------------------------------------------------------------------------------AATATAAATAAATATACATATCAGCTCTC--------TAATAATTGT---CGT-TTCTTTCCTAGTTCGCGGGCGACTGGTATGAGGCTCTGAGATTGCCCAATGTTCCGGGAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
ATCGCTTTTACTCGCTCTTTGTATCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
....................................................ATTGTA------------TTGCCCAGGCTG---------CCGGA.......................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...................................................................................................................TGTGAGGACGACGATAT---AG..............................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCGGGCGACTGGTATGAGG............................2211.00100000010000
droEug1
GACACTCTTCGTCGCTTTGAGTGTCTGTGGAGGT------------AAAGCCACAGCTAGTGTCCTTA------AGTTGCTG---------CCGGAAAACTTACAAGATTTCAAGTGCAACGACGAAGCCAT---AGGATTCAAACTCAACCTAACTGAAGTGAGAAAAATTGCATA-----------------TGA--TT-TTATCATA-----------------------------------------------------------------------------------------GAAACCTAGAACTTCTT-----------------------------------------------------------------------------------TT--------ATAAAACTTCCAT----TAATTTATCAGCTCGCCGGCTACTGGTACGAAGCTGCCCGGATTCCCAAGGTCCCAGT---SizeHit CountTotal NormTotal
No Reads
droBia1
AACCATTTTATTCAGTTTATATTTTTGGGGAAGTACACC---TGTTGAAGCGAGTATT------------TCGCCCAGGCTA---------CCGGAAAACTTACAGGATTTTAAGTGCGAGGCCGATGATAT---TGGATTCGCCTTTAATCTGACAGCGGTGAGGAGAAAAT----------GCTGGAACAGTGCC--TT-GATT--GG-----------------------------------------------------------------------------------------AA-ACTA-AAAGTC-------------------------------------------------------------------------------------CTC------CG-----------AATTC-GTATCTTTCAGCTCTCTGGCTACTGGTACGAGGCTCTTCGAGTTCCCAATATCCAGGTGACSizeHit CountTotal NormTotal
No Reads
droTak1
AACTATTTTTATAGCCTTATTTTTCTGTGGAAGTCTACA---GGTGGAAGGGAA------TATCACCAAGTTGCCCAGGTTG---------CCGGAAAACATACAAGATTTAAAATGTGAGGCCGATGACAT---TGGATTCGGGTTTAACCTTACAGAGGTAGAAATAAAAA-----------------------A--CA-CTTT--GA-----------------------------------------------------------------------------------------TAAAATAAAAAATA-TT----------------------------------------------------------------------------------TTA--------TAAAAATAAT-GTTCC-TTATTTTTCAGCTTGCTGGCTACTGGTACGAGGCTATGCGAATTCCCAATGTTCAGGTGACSizeHit CountTotal NormTotal
No Reads
droEle1
A----TTTTGGCAGCCTTATGCATCTGCGGAAATTTATTGAGTGTTACCGGGAG------TCGCTTGAGGATGCCCATGTTG---------CCTGCGGCACTCGAAGGTTTTAGCTGCCGAAACGACAGCAT---CGGTTTCAACTTTAACCTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CTCAAGTCCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATATTCCCTAA-CTTTATTTAAGCTATCTGGCTACTGGTATGAGGCTGCCCGAGTGCCCAATCTCCAGGTACTSizeHit CountTotal NormTotal
No Reads
droFic1
GACTCTTTTACTCGTCCTCTACTTCTTTATGAGTCCACT---TGTCGAGGCCAG------TGGGATTAACATTCCGAGGCTA---------CCGGAAAACTTACAAGATTTTAAGTGTGAAGAAGATGACAT---TGGTTTTCATTTTAACCTGACAGAGGTGGGAACCTAAA------------------------ACCGATAGAC-A------------------------------------------------------------------------------------------------------------------------------------ATCATATTTGGTTTCAAGCTAAATTTAAAAATATTTGCCTAAGTA------------------------TATAA-----ATTCT-AATTATTTTAGCTCGCTGGTTATTGGTACGAGGCCCTTCGAATTCCAAATGACCAGTCGATSizeHit CountTotal NormTotal
No Reads
droKik1
GACGTTGTTGCTCGCCCTCTGCTGCTGCGGAAGCCAATTGGAGGTTGGAGCGAG------TCGCTTGCTGAGCAGGATGATGCCCAGAGTGCCGGAA---------GGCTGGAGCTGTCAGAATGAAAACATAGGCGGATTCAGCATCAACCTGACTGAAGTAAGTAGCTAAT------------------------AAAGTGTAAAAA-AGAAAATCAAATCAAACTCACTATAATTTAGGAATTTGCAACTAATAATTAATTTGAATTAATTTAAAATAGTTTAAGAATCTGTA---TAG-------ATTA-CA----------------------------------------------------------------------------------AGC--------TTACAT--TTCCCCCT-TTCTTTTCCAGCTTTCTGGCTACTGGTTCGAGGTTGCCCGAGTGCCCAATGTCGATGTTCTSizeHit CountTotal NormTotal
No Reads
droAna3
GGGGCTCTGGATCGCCCTATGCTTCGCCACAAACCC---GGAGGTTGAGGGGGC------CAGATTTAGAATGCCCAACTTG---------TCAGGGAATTTAAAATCTTGGAACTGCCAGGCGGACAACAT---TGGAACCCAGTTAAACTTGACAACCGTGAGTAACTACA------------------------TACATCTAAAAA-AAA-----------------------------------------------------------------------------------AAAAACACATAAAACTTATA---------------------------------------------------------------------------------------------T----------------GTAAATTATAGCTATCCGGGTATTGGTACGAAGCTGCCCGGGTACCCAACGTCGAAGTTATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGTACGAAGCTGCCCGG....................2216.006211020
.................................................................TTAGAATGCCCAACTTG---------TCAGGGAAT...................................................................................................................................................................................................................................................................................................................................................................................................2614.004100030
.................................................................TTAGAATGCCCAACTTG---------TCAGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................2412.002100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGTACGAAGCTGCCCGGGT..................2411.001000010
...........................CACAAACCC---GGAGGTTGAGGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
....................................................................GAATGCCCAACTTG---------TCAGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...................................C---GGAGGTTGAGGGGGC------CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
.................................................................TTAGAATGCCCAACTTG---------TCAGGG......................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGGTATTGGTACGAAGCTGCCCGG....................2811.001100000
..............................................................................................................................CAACAT---TGGAACCCAGTTAAACT...............................................................................................................................................................................................................................................................................................................................................2311.001100000
........................................................................................................AATCTTGGAACTGCCAGGCGGAC........................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....................................................................GAATGCCCAACTTG---------TCAGGGAATT..................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
.....................................................................AATGCCCAACTTG---------TCAGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
................................ACCC---GGAGGTTGAGGGGGC------CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................................................................................................................................CAT---TGGAACCCAGTTAAACTT..............................................................................................................................................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGTACGAAGCTGCCCG.....................2111.001000010
.................................................................................................................ACTGCCAGGCGGACAACAT---TGG.............................................................................................................................................................................................................................................................................................................................................................2211.001100000
..........................CCACAAACCC---GGAGGTTGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.............................................................................................................................................................................................................AAAA-AAA-----------------------------------------------------------------------------------AAAAACACATAAC..................................................................................................................................................................................20200.051010000
droBip1
GGGGCTCTGGATCGCCATGTGCCTCGCCACAAATCCACTGGAGGTCGAGGGGGC------CAGATTTAGGATTCCCAGCTTG---------CCGGGGAATTTAAAATCGTGGAATTGCCAGGCCGACAACAT---TGGAACCCAGTTAAACTTGACAGCCGTGAGTGACTTTG-------------------------------TC----------------TACA----------------------------------------------------------------------AAGCC-------------------------------------------------------------------------------------------------CTCATAAAACT-----------AATTT-ATGAATTGTAGCTATCCGGGTATTGGTACGAAGCTGCCCGGGTACCCAACGTCGCGGTTATSizeHit CountTotal NormTotal
No Reads
dp5
GGCAGTTTTGGTCGCGCTCTGCCTCTGCGGCTTGCCACAGAGGACGGAAGCGGT------TCGCATGAAGATACCCCTCATA---------CCGGATCTACCAAAATCGTTTGACTGTCGGGCTGACAGCAT---TGGTATCACCTACAATCTGACAGCAGTAAGTAGGGATG------------------------AGCGCTGACC-C------------------------------------------------------------------------------------------CCCCCCAAAAATTTCTA---------------------------------------------------------------------------------------------TTCTAATTGCAATTGAGTTTCCCTGCAGCTCTCTGGCTTCTGGTACGAGGCTGCCCGCGTGCCGAATGTGGATGTGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................GGCTTGCCACAGAGGACGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2016.0060300201000
............................GGCTTGCCACAGAGGACGGAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040400000000
..........................GCGGCTTGCCACAGAGGACGGAAGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030300000000
........................................................................................................AATCGTTTGACTGTCGGGCT...........................................................................................................................................................................................................................................................................................................................................................................2013.0030300000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTGGCTTCTGGTACGA..............................1913.0030300000000
...........................................................................................................CGTTTGACTGTCGGGCTG..........................................................................................................................................................................................................................................................................................................................................................................1812.0020200000000
...........................................................................................................CGTTTGACTGTCGGGCTGACA.......................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
....GTTTTGGTCGCGCTCTGCCTCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACGAGGCTGCCCGCGTGC................2112.0020200000000
......................................................................................................................CGGGCTGACAGCAT---TGGT............................................................................................................................................................................................................................................................................................................................................................1812.0020200000000
.........................................GGACGGAAGCGGT------TCGCATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
.........................................GGACGGAAGCGGT------TCGCATGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020200000000
.........GGTCGCGCTCTGCCTCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
........................................................................................................AATCGTTTGACTGTCGGGCTG..........................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
........................................................................................................AATCGTTTGACTGTCGGGC............................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
............................................CGGAAGCGGT------TCGCATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
......................................AGAGGACGGAAGCGGT------TC.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTACGAGGCTGCCCGCGTGCC...............2311.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCCCGCGTGCCGAATGTGGAT.....2511.0010100000000
.........................................GGACGGAAGCGGT------TCGCATGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............CGCTCTGCCTCTGCGGCTTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................CTCATA---------CCGGATCTACCAAAATC...........................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
...............................................................................ATA---------CCGGATCTACCAAAATCGTTC.......................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
.............................GCTTGCCACAGAGGACGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................CTACCAAAATCGTTTGACTGT.................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................CTACCAAAATCGTTTGACTGTCG...............................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
............................GGCTTGCCACAGAGGACGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..CAGTTTTGGTCGCGCTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
.....................................................................................................CAAAATCGTTTGACTGTCGGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..........................................GACGGAAGCGGT------TCGCATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.................................................................................................................................CAT---TGGTATCACCTACAATCTGACAGC........................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.........................................GGACGGAAGCGGT------TCGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................................................GGTATCACCTACAATCTGACA..........................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................CATA---------CCGGATCTACCAAAAT............................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCCCGCGTGCCGAATGTGGATGT...2711.0010100000000
.................................................................................................CTACCAAAATCGTTTGACTGTCGG..............................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......TTGGTCGCGCTCTGCCTCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................ACCAAAATCGTTTGACTGT.................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................GTAAGTAGGGATG------------------------AGCGCTG...........................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTACGAGGCTGCCCGC....................1911.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGCGTGCCGAATGTGGA......2111.0010100000000
..........................GCGGCTTGCCACAGAGGACGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.............................GCTTGCCACAGAGGACGGAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................................................................................GATCTACCAAAATCGTTTGACTGT.................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
............................GGCTTGCCACAGAGGACGGAAGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...............................................................................................................TGACTGTCGGGCTGACAGCAT---T...............................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
............................GGCTTGCCACAGAGGACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................AATCGTTTGACTGTCGGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..........GTCGCGCTCTGCCTCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
......TTTGGTCGCGCTCTGCCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTGGCTTCTGGTACGA..............................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGCTGCCCGCGTGCCG..............2011.0010100000000
...........................................................................................................................................ATCACCTACAATCTGACAGC........................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........TGGTCGCGCTCTGCCTCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................CGGCTTGCCACAGAGGACGGAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
................................................................................TA---------CCGGATCTACCAAAATCGTTTGA.....................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................................................GATACCCCTCATA---------CCGGAT......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................................................................................................TCGTTTGACTGTCGGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................AGATACCCCTCATA---------CCGGATC.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................GT------TCGCATGAAGATACCCCTCATA---------CCG.........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
......................................................................................................................CGGGCTGACAGCAT---TGGTAT..........................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
..........................GCGGCTTGCCACAGAGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
......TTTGGTCGCGCTCTGCCTCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................GAGGACGGAAGCGGT------TCGCATGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..........................................GACGGAAGCGGT------TCGCATGAAGATACCC...........................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
................................................................ATGAAGATACCCCTCATA---------CCG.........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
GGCAGTTTTGGTCGCGCTCTGCCTCTGCGGCTTGCCACAGAGGACGGAAGGGGT------TCGCATGAAGATACCCCTCATA---------CCGGATCTACCAAAATCGTTTGACTGTCGGGCTGACAGCAT---TGGTATCACCTACAATCTGACAGCAGTAAGTAGGGATG------------------------AGCGCTGACC-C-----CC--------------------------------------------------------------------------------ACCCCCCCCAAGAATTTCTA---------------------------------------------------------------------------------------------TTCTAATTGCAATTGAGTTTCCCTGCAGCTCTCTGGCTTCTGGTACGAGGCTGCCCGCGTGCCGAATGTGGATGTGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......TTTGGTCGCGCTCTGCCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
............................GGCTTGCCACAGAGGACGGAAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..........................GCGGCTTGCCACAGAGGACGGAAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
droWil2
TTTA--------------------------------------------TGCAAATGCG-----------TATACCCGAAAGA---------TCGGACACTGCCCAAAGCTATAACTGTCAGAATGATGTATC---TGGATTTGCCTTCAATTTGTCTGCCGTAAGTATACATACATA-----------------GAT--TT-CATT--TA-----------------------------------------------------------------------------------------TAGATTAACAATT---------------------------------------------------------------------------------------TA------TA-----------ATTTT-ATGTTATTCAGTTGTCTGGCTATTGGTATGAGGCTGCTCGAGTGCCCAATCAGGACGTCTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................ATACCCGAAAGA---------TCGGAC......................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000
....................................................................................................................GTCAGAATGATGTATC---TG..............................................................................................................................................................................................................................................................................................................................................................1811.00110000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGCTATTGGTATGAGGC...........................2011.00100100
.........................................................................................................................AATGATGTATC---TGGATTTGCCTT....................................................................................................................................................................................................................................................................................................................................................2311.00100100
...................................................AAATGCG-----------TATACCCGAAAGA---------TCGG........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
....................................................................................................GCCCAAAGCTATAACTGTC................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
........................................................................................................................GAATGATGTATC---TGGATTTGCCTT....................................................................................................................................................................................................................................................................................................................................................2411.00100100
.....................................................ATGCG-----------TATACCCGAAAGA---------TCGGA.......................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.............................................................................AAAGA---------TCGGACACTGCCCAAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
.......................................................................................................................AGAATGATGTATC---TGGATTTGCCTTCA..................................................................................................................................................................................................................................................................................................................................................2711.00100100
............................................................................GAAAGA---------TCGGACACTGCCCAAAGCTAT.......................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
......................................................................ATACCCGAAAGA---------TCGGACACTGCCCA..............................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
...........................................................................................................................TGATGTATC---TGGATTTGCCT.....................................................................................................................................................................................................................................................................................................................................................2011.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATTGGTATGAGGCTGCT.......................2011.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGAGGCTGCTCGAGT..................1911.00100100
.......................................................................TACCCGAAAGA---------TCGGACACT...................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
..........................................................................................................AGCTATAACTGTCAGAATG..........................................................................................................................................................................................................................................................................................................................................................................1911.00100100
......................................................................ATACCCGAAAGA---------TCGGACACT...................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.........................................................................................................................AATGATGTATC---TGGATTTGCC......................................................................................................................................................................................................................................................................................................................................................2111.00100100
droVir3
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACAGCTGGCGGGCTACTGGTACGAGGCAGTCAGAGTGCCGAATGTGGATGTTATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTCAGGTATTTGGTATGAGGCGGGCCGGGTACCTAATGAGGATGTTATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 06:45 PM