ID:

dsi_75

 Coordinate:

3r:16351789-16351844 +

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.6

Flybase annnotation

utr3 [utr3_minus_7095]

No Repeatable elements found

Sense Strand Reads

CCACAAACCAAACAACAACAACAACAAAACAATAGAAAAAAAAACAAATAAACAATTGTACATGGCTTTCGTAAAGAAATTTATTAAAGCTTTGTATGATTAACCAAAAAAAATCCTGAAATTTGTGTTTTTATTTGCGTTATCACGTACAGTTTT

************************************.................(((((((((.((((((.(((((....))))).)))))).)))))))))...................************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486

Makindu_3 day-old ovaries

 SRR553485

Chicharo_3 day-old ovaries

 M023

head

 SRR553488

RT_0-2 hours eggs

 M025

embryo

 SRR553487

NRT_0-2 hours eggs

 M053

female body

 M024

male body		 SRR618934

dsim w501 ovaries

 SRR902008

ovaries

 GSM343915

embryo

 O002

Head

 SRR902009

testis
................................................TAAACAATTGTACATGGCTTTCGTAAAGA............................................................................... 29 0 1 49.00 49 27 20 0 1 0 1 0 0 0 0 0 0 0
...................................................................................TTAAAGCTTTGTATGATTAACC................................................... 22 0 1 39.00 39 1 0 19 1 11 0 0 5 1 0 1 0 0
................................................TAAACAATTGTACATGGCTTTCGTA................................................................................... 25 0 1 23.00 23 12 5 0 2 0 3 1 0 0 0 0 0 0
...................................................................................TTAAAGCTTTGTATGATTAAC.................................................... 21 0 1 6.00 6 0 1 5 0 0 0 0 0 0 0 0 0 0
................................................TAAACAATTGTACATGGCTTTCGTAAA................................................................................. 27 0 1 5.00 5 3 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................TAAAGCTTTGTATGATTAACCA.................................................. 22 0 1 5.00 5 2 0 0 2 0 1 0 0 0 0 0 0 0
..............................................AATAAACAATTGTACATGGCTTTCGTA................................................................................... 27 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTAAAGCTTTGTATGATTAACT................................................... 22 1 1 5.00 5 0 1 3 0 0 0 0 0 1 0 0 0 0
.................................................................................TATTAAAGCTTTGTATGATT....................................................... 20 0 1 4.00 4 2 0 0 0 0 0 0 1 1 0 0 0 0
.................................................................................TATTAAAGCTTTGTATGATTAACCAAAA............................................... 28 0 1 4.00 4 0 1 0 1 0 2 0 0 0 0 0 0 0
.............................................AAATAAACAATTGTACATGGCTTTCGTA................................................................................... 28 0 1 4.00 4 0 3 0 1 0 0 0 0 0 0 0 0 0
.....................................................................CGTAAAGAAATTTATTAAAGCTTTGTA............................................................ 27 0 1 3.00 3 0 0 0 1 0 2 0 0 0 0 0 0 0
...................................................ACAATTGTACATGGCTTTCGTA................................................................................... 22 0 1 3.00 3 0 2 0 1 0 0 0 0 0 0 0 0 0
....................................................CAATTGTACATGGCTTTCGTA................................................................................... 21 0 1 3.00 3 0 1 0 0 0 0 1 0 0 0 1 0 0
....................................................................................TAAAGCTTTGTATGATTAACC................................................... 21 0 1 3.00 3 0 0 1 0 1 0 0 0 0 0 0 1 0
...................................................................................TTAAAGCTTTGTATGATTAAA.................................................... 21 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...............................................ATAAACAATTGTACATGGCTTTCGTA................................................................................... 26 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................TTATTAAAGCTTTGTATGATT....................................................... 21 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
................................................................................TTATTAAAGCTTTGTATGATTAACCAAAA............................................... 29 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
..................................................AACAATTGTACATGGCTTTCGTA................................................................................... 23 0 1 2.00 2 0 0 0 0 1 0 1 0 0 0 0 0 0
.......................................................TTGTACATGGCTTTCGTAAAGAAATT........................................................................... 26 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0
..................................................AACAATTGTACATGGCTTTCGT.................................................................................... 22 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0
....................................................................................TAAAGCTTTGTATGATTAACCAAA................................................ 24 0 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 1
.................................................................................TATTAAAGCTTTGTATGATTAAA.................................................... 23 1 1 2.00 2 0 0 0 0 0 1 0 0 0 1 0 0 0
.................................................................................TATTAAAGCTTTGTATGATTA...................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................AACAAATAAACAATTGTACATGGC.......................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................AAGCTTTGTATGATT....................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTAAAGCTTTGTATGATTAACA................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................TGTACATGGCTTTCGTAAAGAAATTTA......................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................CACGGCTTTCGTAAA................................................................................. 15 1 6 1.00 6 0 0 0 6 0 0 0 0 0 0 0 0 0
..................................................................................ATTAAAGCTTTGTATGATTAAC.................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................AAACAATTGTACATGGCTTTCGT.................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................TAAAGCTTTGTATGATTAAGA................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................AATAAACAATTGTACATGGCTTTAA..................................................................................... 25 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................AAATAAACAATTGTACATGGCTTTC...................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................TACATGGCTTTCGTAAAGAA.............................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................CGTAAAGAAATTTATTAAAGCTTTGT............................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................ACAATTGTACATGGCTTTC...................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................AAAAAACAAATAAACAATTGTACATGGC.......................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................AGAAAAATAAACAATTGTACACGGCT......................................................................................... 26 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................CAATTGTACATGGCTTTCGTAAAGA............................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................GTAAAGAAATTTATTAAAGCTTTGTATG.......................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................AACAATTGTACATGGCTTTCGTAAAGA............................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................CAAATAAACAATTGTACATGGCTTTCGT.................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................TATGAAGGCTTTGTATGATTA...................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................AAACAATTGTACATGGCT......................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................AACAATTGTACATGGCTTTCGC.................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................CAATTGTACATGGCTTTCGTAAAGAAA............................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................AGATAAACAATTGTACATGGCTTTCGTA................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTAAAGCTTTGTATGATTAAAA................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................ACAATTGTACATGGCTTTCGT.................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................TTAAAGCTTTGTATGATTAA..................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................TATTAAAGCTTTGTATGATTACT.................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................ACAACAACAAAACAATAGAAAAA.................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................TTAAAGCTTTGTATGATTATA.................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................TACATGGCTTTCGTAAAGAAATT........................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TATTAAAGCTTTATATGATT....................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................AATTGTACATGGCTTTCGTAA.................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................AAACAATTGTACATGGCTTTCG..................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TTTATTAAAGCTTTGTATGATTAACCAAAA............................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................GTACATGGCTTTCGTAAAGAA.............................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................TAAACAATTGTACATGGCTTTC...................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................TAAACAATTGTACATGGCTTTCGTAAAGAA.............................................................................. 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................ATAAACAATTGTACATGGCT......................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................ATGGCTTTCGTAAAGAAATTTATT....................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............AAACAACAACAAAACAATAGAAAA..................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................TTAAAGCTTTGTATGATTAACCAAAA............................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTGTACATGGCTTTCGTAAAGAAAT............................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TATTAAAGCTTTGTATGATTAAC.................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................TAGAAAAAAAAACAAAT........................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................AAAGAAATTTCTTTAAGCCTTGTA............................................................ 24 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................TTTATTAAAGCTTTGTATGAACTA..................................................... 24 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................ACGGCTTTCGTAAAG................................................................................ 15 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................CTTGTATGATTAACAAAA................................................ 18 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................AGCATGGCTTTCGTAAA................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................AACAAAACAATCGAAAA..................................................................................................................... 17 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGTGTTTGGTTTGTTGTTGTTGTTGTTTTGTTATCTTTTTTTTTGTTTATTTGTTAACATGTACCGAAAGCATTTCTTTAAATAATTTCGAAACATACTAATTGGTTTTTTTTAGGACTTTAAACACAAAAATAAACGCAATAGTGCATGTCAAAA

************************************.................(((((((((.((((((.(((((....))))).)))))).)))))))))...................************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR618934

dsim w501 ovaries

 O001

Testis

 SRR553486

Makindu_3 day-old ovaries

 GSM343915

embryo

 SRR553487

NRT_0-2 hours eggs

 M023

head
..........................................................................................................................................CAATAGTGCATGGCA... 15 1 1 1.00 1 1 0 0 0 0 0
.GTGTTTGGTTTGTTGTTGTTG...................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.........................................................CATGTACCGAAAGCATTTCTT.............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................TTTTTTGTTAGGACTTTAAACATA............................ 24 3 1 1.00 1 0 0 1 0 0 0
.....................................................................................................TCGGTTTTTTTTAGGATTTT................................... 20 2 10 0.10 1 1 0 0 0 0 0
......TTGTTTGTTGTTGTTGTTGTTTTTT............................................................................................................................. 25 2 12 0.08 1 0 0 0 0 1 0
........................GTTTTGTTATCTTTGTTTTG................................................................................................................ 20 2 14 0.07 1 0 0 0 1 0 0
.....TTGGTTTGTTGTAGTTGTCTTT................................................................................................................................. 22 3 20 0.05 1 0 0 0 1 0 0
.......................................................................................................................................AGGCAATAGTGCATCTAA... 18 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 3r:16351739-16351894 + dsi_75 confident CCA--CAA-A--------------------------------------CCA---------AACAAC-A---A---CAACAACAAAACAATAGAAA----------AAAAAACAAATAAAC-AATTGTACATGGCTTTCGTAAAGAAATTTATTAAAGCTTTGTATGATTAACCAAAAAAAA---TCCTGAAA-TTTGTGTTTTTATTTGCGTTAT---CACGTACAG-TTTT
droSec2 scaffold_0:17217387-17217538 + dse_1844 confident CCA--CAA-A--------------------------------------CCA---------AACAA-CA---A------CAACAAAACAATAGAAA----------A-AAAACAAATAAAC-AATTGTACATGGCTTTCGTAAAGAAATTTATTAAAGCTTTGTATGATTAACCAAAAAAAA---TTCTGAAA-TTTGTGTTTTTATTTGCGTTAT---CACGTACAG-TTTT
dm3 chr3R:4640239-4640389 - dme_421 confident CCA--CAA-A--------------------------------------CCA---------AACAA-CA---A------CAACAAAACAATAGAAA-------------AAAGAAATAAAC-AATTGTACATGGCTTTCGTAAAGAAATTTATGAAGGCTTTGTATGATTAACCAAAAAAAAA--TCCACAAA-TTTGTGTTTTTATTTGCGTTAT---CACGTACAG-TTTT
droEre2 scaffold_4770:16945910-16946056 + der_1521 confident CCA--CAA-A--------------------------------------CCA---------A----ACA---A------CAACAAAACAATAGAAA----------A--AAACAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACCAAAAAAA----TCCTCAAA-TTTGTGTTTTTATTTGCGTTAT---CACGTACAG-TTTT
droYak3 3R:8702173-8702325 - dya_1796 confident CCG--TCAAA--------------------------------------CCA---------A----ACA---A------CAACAAAACAATAGAAGA---------AAAAAACAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACCAAAAAAAAA--TCCTCAAA-TTTGTGTTTTCATTTGCGTTAT---CACGTACAG-TTTT
droEug1 scf7180000409490:80962-81115 + CCA--CAAAA--------------------------------------CCA---------ACCAACCA---A------CAACAAAACAATAGAAA----------AAAAATCAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAA----ACCTCAAA-TTTGTGTTTTCATTTGCGTTAT---CACGTACAG-TTTT
droBia1 scf7180000302402:7353502-7353649 - CCA--CAAAA--------------------------------------CCA---------A----CCA---A------CAAGAAATCCATAGAAA----------A---AA-CAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAAAC--AACCAAAA-TTTGTGTTTTTATTTGCGTTAT---CACGTACCG-TTTT
droTak1 scf7180000414009:179086-179235 + CTA--TAAAA--------------------------------------CCA---------ACCAACCA---A------CAAGAAAACAATAGAAA-------------AAACAAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAAAAAAAAAA-----ACCTCAAA-TTTGTGTTTTTATTTGCGTTAT---CACGTACAA-TTTT
droEle1 scf7180000491212:1154180-1154329 + CCA--CAAAA--------------------------------------GCA--TCCACCAA----CCA---G------C-----AACAATAAAAA-------------AAACAAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAGA---ACCCCAAA-TTTGTGTTTTTATTTGCGTTAT---CACGTAAAA-TTTT
droRho1 scf7180000778307:14066-14217 + CCA--CAAAA--------------------------------------CCA---------ACCAACCA---A------CATCAAAACAATAGAAA----------A--AAACAAATAAAC-AATTGTACACGGCTTTCGTAAAGCAATTTATTGAAGCTTTGTATAATTAACAAAAAAAA----ACCTCAAA-TTTGTGTTTTTATTTGCGTCAT---CACGTACAA-TTTT
droFic1 scf7180000454106:2527579-2527731 + CCA--CAAAG--------------------------------------CCA--ACCACCAA----CCA---A------CCACAAAACAATAGAAA--------------AACAAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAA----ACCTCCAA-ATTGTGTTTTTATTTGCCTTAT---CACGTACCA-TTTT
droKik1 scf7180000302247:250353-250510 + CCA--CAAAA--------------------------------------CCA---------ACCAACCA---T------CAACAAAACAATAGAAGA-AA------AAAAACAAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAAAAAAAAGAAC---AACCAAAA-TTTGTGTTTTTATTTGCCTTAT---CACGTACAC-TTTT
droAna3 scaffold_13340:11049297-11049425 - dan_90 confident TGA--AAA-A------------GAAAT---------C--------AACC-------CTCAA----CCA---A------CCACAAAGCAATAGAAA-----------------AAATAAAC-AATTGTACACGGCTTTCGTAAAGTGATTTATTAAAGCCTTGTATAATTAAGAAAAACAA--------CAAA-TTTGTGTTTTTATTT------------------------
droBip1 scf7180000396374:34261-34385 + ACA--AAA-G--------------------------------------AAA--TCCCTCAA----CCA---A------CCACAAAGCAATAGAAA-----------------AAATAAAC-AATTGTACACGGCTTTCGTAAAGTGATTTATTAAAGCCTTGTATAATTAACAAAAACAA--------CAAA-TTTGTGTTTTTATTT------------------------
dp5 2:27294854-27295024 - dps_3827 candidate-rescued CCTTACAA-A--------------------------------------CCAAATCCAT-------TCAACAG--------AAAAAACAATAGAAGA-ACAAAAA-AAAAAGAAAATAAAA-AATTGTACACGGCTTTTATGAAGTAATTTGTTAAAGCTTTGTATGATTAAACAAAAAAAAA--AAACCAAA-TTTGTGTTTTTATTTGCATTTTTTACCCGTTTAC-TTTT
droPer2 scaffold_6:2585052-2585225 - dpe_2481 candidate CCTTACAA-A--------------------------------------CCAAATCCAT-------TCAACAG--------AAAAAACAATAGAAGA-ACAAAAA-AAAAAGAAAATAAAA-AATTGTACACGGCTTTTATGAAGTAATTTGTTAAAGCTTTGTATGATTAAACAAAAAAAAAAAACCCCAAA-TTTGTGTTTTTATTTGCATTTTGTAACCGTTTACTTTTT
droWil2 scf2_1100000004902:4649914-4650075 + dwi_5415 confident AAC--CAAAACAAAAGAAAAGAAAAGTTTAAAAAATCAAAACAA----CCA---------A----CCAA--C------CAACAAAACAATAGAAA------------------AATAAAC-AATTGTACACGGCTTTTATAAAGTAATTTATTAAAGCTTTGTATAATTACCCAAAAAAAAAAACCCAAAAA-TTTTTGTTTTTATTTG-----------------------
droVir3 scaffold_13047:1835021-1835158 + dvi_24634 confident AC----AA-C--------------------------------------CCA---------A----CCA---A------CA--AAAACAATAGAAAA-AAAAACATAAAAAAAAAATAAATAAATTGTACACGGCTTTCGTAAAGAAATTTATTGAAGCTTTGTATAATTAACAAAAAAAAAA-ACCTTGAAC-TTTGTGTTTTTATTT------------------------
droMoj3 scaffold_6540:3761896-3762078 + dmo_3126 candidate AAA--CAAAATGAAAGAAAGAAGAGAT---------G--------AACCCA---------A----CCA---ACAACAAAAAAAAACCAATAGAAAAAACTAAAA-AAAAAAAAAATAAAC-AATTGTACACTGCTTTCGTAAAGAAATTTATTGAAGCTTTGTATAATTAAAAAAAAAAA----AACTGAACTTTTGTGTTTTTATTTGATTTATT--TACATACA------
droGri2 scaffold_14906:8668142-8668297 + dgr_462 candidate CGA--AAAACTAAAAAAAAAAAAAAGT---------G-----AACAACCCA---------A----CCA------------ACAAAACAATAGAAA----------A------AAATAAAC-AATTGTACACGGCTTTCGTAAAGAAATTTATCGAAGCTTTGTATAATTAACCAAAAAAAAACAACCTGATC-TTTGTGTTATTATTTGCTTTAT-----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCA--CAA-A--------------------------------------CCA---------AACAAC-A---A---CAACAACAAAACAATAGAAA----------AAAAAACAAATAAAC-AATTGTACATGGCTTTCGTAAAGAAATTTATTAAAGCTTTGTATGATTAACCAAAAAAAA---TCCTGAAA-TTTGTGTTTTTATTTGCGTTAT---CACGTACAG-TTTTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................................................................TAAAC-AATTGTACATGGCTTTCGTAAAGA.......................................................................................29149.00490000002027110000000
.......................................................................................................................................................TTAAAGCTTTGTATGATTAACC...........................................................22139.00391951100001011100000
...................................................................................................................TAAAC-AATTGTACATGGCTTTCGTA...........................................................................................25123.0023000100512320000000
.......................................................................................................................................................TTAAAGCTTTGTATGATTAAC............................................................2116.00650000010000000000
...................................................................................................................TAAAC-AATTGTACATGGCTTTCGTAAA.........................................................................................2715.00500000013000010000
........................................................................................................................................................TAAAGCTTTGTATGATTAACCA..........................................................2215.00500000002120000000
.................................................................................................................AATAAAC-AATTGTACATGGCTTTCGTA...........................................................................................2715.00500000014000000000
.......................................................................................................................................................TTAAAGCTTTGTATGATTAACT...........................................................2215.00530000010001000000
.....................................................................................................................................................TATTAAAGCTTTGTATGATT...............................................................2014.00401000002001000000
.....................................................................................................................................................TATTAAAGCTTTGTATGATTAACCAAAA.......................................................2814.00400000010210000000
................................................................................................................AAATAAAC-AATTGTACATGGCTTTCGTA...........................................................................................2814.00400000030010000000
.........................................................................................................................................CGTAAAGAAATTTATTAAAGCTTTGTA....................................................................2713.00300000000210000000
......................................................................................................................AC-AATTGTACATGGCTTTCGTA...........................................................................................2213.00300000020010000000
.......................................................................................................................C-AATTGTACATGGCTTTCGTA...........................................................................................2113.00300010010000100000
........................................................................................................................................................TAAAGCTTTGTATGATTAACC...........................................................2113.00310100100000000000
.......................................................................................................................................................TTAAAGCTTTGTATGATTAAA............................................................2112.00200000000020000000
..................................................................................................................ATAAAC-AATTGTACATGGCTTTCGTA...........................................................................................2612.00200010001000000000
....................................................................................................................................................TTATTAAAGCTTTGTATGATT...............................................................2112.00200000000200000000
....................................................................................................................................................TTATTAAAGCTTTGTATGATTAACCAAAA.......................................................2912.00200000000020000000
.....................................................................................................................AAC-AATTGTACATGGCTTTCGTA...........................................................................................2312.00200110000000000000
...........................................................................................................................TTGTACATGGCTTTCGTAAAGAAATT...................................................................................2612.00200000000002000000
.....................................................................................................................AAC-AATTGTACATGGCTTTCGT............................................................................................2212.00210100000000000000
........................................................................................................................................................TAAAGCTTTGTATGATTAACCAAA........................................................2412.00200000000001001000
.....................................................................................................................................................TATTAAAGCTTTGTATGATTAAA............................................................2312.00200000000100010000
.....................................................................................................................................................TATTAAAGCTTTGTATGATTA..............................................................2111.00100010000000000000
.............................................................................................................AACAAATAAAC-AATTGTACATGGC..................................................................................................2411.00100000001000000000
..........................................................................................................................................................AAGCTTTGTATGATT...............................................................1511.00100000010000000000
.......................................................................................................................................................TTAAAGCTTTGTATGATTAACA...........................................................2211.00100000000010000000
............................................................................................................................TGTACATGGCTTTCGTAAAGAAATTTA.................................................................................2711.00100000000010000000
......................................................................................................................................................ATTAAAGCTTTGTATGATTAAC............................................................2211.00100000000010000000
....................................................................................................................AAAC-AATTGTACATGGCTTTCGT............................................................................................2311.00100100000000000000
........................................................................................................................................................TAAAGCTTTGTATGATTAAGA...........................................................2111.00100000000010000000
.................................................................................................................AATAAAC-AATTGTACATGGCTTTAA.............................................................................................2511.00100000000000010000
................................................................................................................AAATAAAC-AATTGTACATGGCTTTC..............................................................................................2511.00100010000000000000
..............................................................................................................................TACATGGCTTTCGTAAAGAA......................................................................................2011.00100000000001000000
.........................................................................................................................................CGTAAAGAAATTTATTAAAGCTTTGT.....................................................................2611.00100000000000001000
......................................................................................................................AC-AATTGTACATGGCTTTC..............................................................................................1911.00100010000000000000
.........................................................................................................AAAAAACAAATAAAC-AATTGTACATGGC..................................................................................................2811.00100000000100000000
.......................................................................................................................C-AATTGTACATGGCTTTCGTAAAGA.......................................................................................2511.00100000010000000000
..........................................................................................................................................GTAAAGAAATTTATTAAAGCTTTGTATG..................................................................2811.00100010000000000000
.....................................................................................................................AAC-AATTGTACATGGCTTTCGTAAAGA.......................................................................................2711.00100000001000000000
...............................................................................................................CAAATAAAC-AATTGTACATGGCTTTCGT............................................................................................2811.00100000000000010000
....................................................................................................................AAAC-AATTGTACATGGCT.................................................................................................1811.00101000000000000000
.....................................................................................................................AAC-AATTGTACATGGCTTTCGC............................................................................................2211.00100100000000000000
.......................................................................................................................C-AATTGTACATGGCTTTCGTAAAGAAA.....................................................................................2711.00100000010000000000
.......................................................................................................................................................TTAAAGCTTTGTATGATTAAAA...........................................................2211.00100000001000000000
......................................................................................................................AC-AATTGTACATGGCTTTCGT............................................................................................2111.00100000000000100000
.......................................................................................................................................................TTAAAGCTTTGTATGATTAA.............................................................2011.00100000100000000000
.....................................................................................................................................................TATTAAAGCTTTGTATGATTACT............................................................2311.00100000001000000000
.......................................................................A---CAACAACAAAACAATAGAAA----------AA.............................................................................................................................2311.00100010000000000000
.......................................................................................................................................................TTAAAGCTTTGTATGATTATA............................................................2111.00100000000000100000
..............................................................................................................................TACATGGCTTTCGTAAAGAAATT...................................................................................2311.00100000001000000000
.........................................................................................................................AATTGTACATGGCTTTCGTAA..........................................................................................2111.00100000000000100000
....................................................................................................................AAAC-AATTGTACATGGCTTTCG.............................................................................................2211.00110000000000000000
...................................................................................................................................................TTTATTAAAGCTTTGTATGATTAACCAAAA.......................................................3011.00100000001000000000
.............................................................................................................................GTACATGGCTTTCGTAAAGAA......................................................................................2111.00100000000100000000
...................................................................................................................TAAAC-AATTGTACATGGCTTTC..............................................................................................2211.00100010000000000000
...................................................................................................................TAAAC-AATTGTACATGGCTTTCGTAAAGAA......................................................................................3011.00100000001000000000
..................................................................................................................ATAAAC-AATTGTACATGGCT.................................................................................................2011.00100010000000000000
.................................................................................................................................ATGGCTTTCGTAAAGAAATTTATT...............................................................................2411.00101000000000000000
.......................................................................................................................................................TTAAAGCTTTGTATGATTAACCAAAA.......................................................2611.00100000010000000000
...........................................................................................................................TTGTACATGGCTTTCGTAAAGAAAT....................................................................................2511.00100000001000000000
.....................................................................................................................................................TATTAAAGCTTTGTATGATTAAC............................................................2311.00100000001000000000
.........................................................................................TAGAAA----------AAAAAACAAAT....................................................................................................................1711.00100000000001000000
droSec2
CCA--CAA-A--------------------------------------CCA---------AACAA-CA---A------CAACAAAACAATAGAAA----------A-AAAACAAATAAAC-AATTGTACATGGCTTTCGTAAAGAAATTTATTAAAGCTTTGTATGATTAACCAAAAAAAA---TTCTGAAA-TTTGTGTTTTTATTTGCGTTAT---CACGTACAG-TTTTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.......................................................................................................................................................TTAAAGCTTTGTATGATTAACC...........................................................22120.00206446
........................................................................................................................................................TAAAGCTTTGTATGATTAACCA..........................................................2219.0091080
......................................................................................................................................................ATTAAAGCTTTGTATGATTAAC............................................................2217.0070241
........................................................................................................................................................TAAAGCTTTGTATGATTAACC...........................................................2116.0060312
.......................................................................................................................................................TTAAAGCTTTGTATGATTAAC............................................................2116.0062202
......................................................................................................................AC-AATTGTACATGGCTTTCGT............................................................................................2113.0031101
.......................................................................................................................................................TTAAAGCTTTGTATGATTAACCA..........................................................2313.0030030
.....................................................................................................................................................TATTAAAGCTTTGTATGATT...............................................................2013.0032100
......................................................................................................................................................ATTAAAGCTTTGTATGATT...............................................................1913.0031110
..............................................................................................................................TACATGGCTTTCGTAAAGAAAT....................................................................................2212.0020002
..............................................................................................................................TACATGGCTTTCGTAAAGAAATTTAT................................................................................2612.0021001
.......................................................................................................................................................TTAAAGCTTTGTATGATTAACT...........................................................2212.0021001
.......................................................................................................................................................TTAAAGCTTTGTATGATTAATT...........................................................2212.0020002
.....................................................................................................................AAC-AATTGTACATGGCTTTCGT............................................................................................2212.0020101
.......................................................................................................................................................TTAAAGCTTTGTATGATTAAT............................................................2112.0020011
......................................................................................................................................................ATTAAAGCTTTGTATGAT................................................................1812.0020020
.....................................................................................................................................................TATTAAAGCTTTGTATGATTAA.............................................................2212.0021100
......................................................................................................................................................ATTAAAGCTTTGTATGATTA..............................................................2011.0010100
......................................................................................................................................................ATTAAAGCTTTGTATGATTAACCA..........................................................2411.0011000
.......................................................................................................................................................TTAAAGCTTTGTATGATTAAAA...........................................................2211.0010001
...........................................................................................................................TTGTACATGGCTTTCGTAAAGAAA.....................................................................................2411.0010001
....................................................................................................................AAAC-AATTGTACATGGCTT................................................................................................1911.0011000
.......................................................................................................................................................TTAAAGCTTTGTATGATTAAG............................................................2111.0011000
........................................................................................................................................................TAAAGCTTTGTATGATTAAC............................................................2011.0010001
.....................................................................................................................................................TATTAAAGCTTTGTATGATTACT............................................................2311.0010100
....................................................................................................................................................TTATTAAAGCTTTGTATGATT...............................................................2111.0011000
.......................................................................................AATAGAAA----------A-AAAACAAATAAAC-AATT...........................................................................................................2611.0010001
..............................................................................................................................TACATGGCTTTCGTAAAGAAATT...................................................................................2311.0010001
......................................................................................................................................................ATTAAAGCTTTGTATGATTAAA............................................................2211.0010001
..........................................................................................................................ATTGTACATGGCTTTCGTAAAGAA......................................................................................2411.0010100
................................................................................................................................................AAATTTATTAAAGCTTTGTATGA.................................................................2311.0010010
.............................................................................................................................................AAGAAATTTATTAAAGCTTTG......................................................................2111.0010100
.....................................................................................................................................................TATTAAAGCTTTGTATGATTAC.............................................................2211.0011000
.....................................................................................................................................................TATTAAAGCTTTGTATGATTA..............................................................2111.0011000
.............................................................................................................................GTACATGGCTTTCGTAAAGA.......................................................................................2011.0011000
.......................................................................................................................C-AATTGTACATGGCTTTCGT............................................................................................2011.0010100
.................................................................................................................................................AATTTATTAAAGCTTTGTATGATTAACC...........................................................2811.0010001
.........................................................................................................................AATTGTACATGGCTTTCGT............................................................................................1911.0010100
........................................................................................................................................................TAAAGCTTTGTATGATTAACA...........................................................2111.0010100
..........................................................................................................................ATTGTACATGGCTTTCGT............................................................................................1811.0010010
.................................................................................................................AATAAAC-AATTGTACATGGCTTTCGT............................................................................................2611.0010100
.......................................................................................................................................................TTAAAGCTTTGTATGATT...............................................................1811.0010001
.........................................................................................................................................................AAAGCTTTGTATGATTAACT...........................................................2011.0010001
....................................................................................................................AAAC-AATTGTACATGGCTTTCGT............................................................................................2311.0010010
.....................................................................................................................AAC-AATTGTACATGGCTTTCGTA...........................................................................................2311.0010100
.....................................................................................................................................................TATTAAAGCTTTGTATGATTTT.............................................................2211.0010100
..........................................................................................................................ATTGTACATGGCTTTCGTAAAGAAAT....................................................................................2611.0010100
.....................................................................................................................................................TATTAAAGCTTTGTATGATTT..............................................................2111.0010001
.............................................................................................................................................AAGAAATTTATTAAAGCTTTGTATGAT................................................................2711.0011000
..............................................................................................................................TACATGGCTTTCGTAAAG........................................................................................1811.0010001
........................................................................................................................................................TAAAGCTTTGTATGATTAACCAAAAAA.....................................................2711.0010010
..............................................................................................................................TACATGGCTTTCGTAAAGAAATTT..................................................................................2411.0010001
........................................................................................................................................................TAAAGCTTTGTATGATTAATGG..........................................................2220.5010001
.....................................................................................................................................................TATTAAAGCTTTGTATGAAA...............................................................2040.2510100
........................................................................................................................................................TAAAGCTTTGTATGATTAAAGT..........................................................2260.1710001
dm3
CCA--CAA-A--------------------------------------CCA---------AACAA-CA---A------CAACAAAACAATAGAAA-------------AAAGAAATAAAC-AATTGTACATGGCTTTCGTAAAGAAATTTATGAAGGCTTTGTATGATTAACCAAAAAAAAA--TCCACAAA-TTTGTGTTTTTATTTGCGTTAT---CACGTACAG-TTTTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.......................................................................................................................................................TGAAGGCTTTGTATGATTAACC...........................................................2211098.0010980000000000000000000000000000000000010211010000010000100000000000000000000000221100000004101000100000200000405000000000000103010110000000000000000000010000000000000001302101600010650001030110000000000000100000000001223210212120001000011000052100000641310342241601323253016411142824001568818111212161215424279271207195361553483830956640281812623191268258700
.......................................................................................................................................................TGAAGGCTTTGTATGATTAAC............................................................211528.005280000000000000000000000000000000000001000000000003000000000000000000000000000132210000000000100000000061000000000000021000000000000000000000000000010030000000000000003100000102000500002030013000003010000010000000012111411322533100000002001101000010000202011011321173007252611808001003814582421234000998803075136261404193381408194391041582200
......................................................................................................................AC-AATTGTACATGGCTTTCGTA...........................................................................................221416.004160000000000000000000000000010000000000110001000001220000000000000000000000000100100000001000000000000000000300010004010000101000000000000000000001110132201000000000002002100010000100000100211000403000000030000000000210624531350003000001021141602016003106234122172370104375901204004023115041020143321211505315212501566901102241311142900
.......................................................................................................................................................TGAAGGCTTTGTATGATTAACT...........................................................221377.0037700000000000000000000000000100000000000000001000111000000000000000000000000001210000000000001000000020000000000000000010100000010000000000000000000000100000000000000011020041020106000000500000000010000000100000010003020000010100000000010110112120021006120321030211610015000413109038985104432301012420130101255210114138120615315104292400
......................................................................................................................AC-AATTGTACATGGCTTTCGT............................................................................................211270.0027000000000000000000000000000000000000000002000000000100000000000000000000000000110000040101000032000010000001010020030100000000000000000000000100000111610000000000000010000001010010000000000000000000000000000000000000002122022100000000010000422010093110011011140020230000501010010602343425415000001023010338331022511102129132352509200
.....................................................................................................................AAC-AATTGTACATGGCTTTCGT............................................................................................221176.00176000000000000000000000000000000000000200000000000010000000000000000000000000021100000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000010000020000000002000000000000000000000000010014210100000000001000000200001310110301000103024100131125000032020016300100002061005025848624865216112111102500
.....................................................................................................................................................TATGAAGGCTTTGTATGATT...............................................................201174.0017400000000000000000000000100100000000000000000000010000000000000000000000000000001000000000000000000000000000000000000000000000001000000000000000000001000000000000000500010000000001000010200100000000000000000000004003000100000000000000000001011000010005070210002200330012000200102011383000017000003001040014335035181620311200431500
......................................................................................................................................................ATGAAGGCTTTGTATGATTAAC............................................................221124.00124000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000000001000000000000000000000000000100000000000001000000000000000000100000000000000000000110000000000000000000000000000000001131000000000000001000000000110002000011100000271102100010010114122320021000301044105300282602532118102200
.......................................................................................................................C-AATTGTACATGGCTTTCGTA...........................................................................................211117.001170000000000000000000000000002100000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000001010000000000000000002220020113000000000000000000000000000000000000200022100100000000000000000000000010000001001020201000100111000001000200000000001000100009102042415005200425271700
.......................................................................................................................C-AATTGTACATGGCTTTCGT............................................................................................201113.00113000000000000000000000000000100000000000000000100000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000010201000101200000001001000010000000000000000200000100000100000000002000010000000000000000100102002000000011000020142151101301000214010001702501427302640202201200
.......................................................................................................................C-AATTGTACATGGCTTTCGTAA..........................................................................................221103.001030000000000000000000000000000000000000100000000000000000000000000000000000000010100000101000000000000000000100000000000000000010010000000000000000010002000000000000000100000210010200001000001000000000000020000000000200305140110001000000000010000100102001010100011110000000001000001000100000000120100010326211020212003002121021000
.......................................................................................................................................................TGAAGGCTTTGTATGATTAACA...........................................................221100.001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000200000000000000000000000000000000000000000010000000000000000000000100000010000000000000000000000000000000000000000000010000000000000000100000010001001000100110001100010000100111241000001201130020103111300593403000112114700
.......................................................................................................................................................TGAAGGCTTTGTATGATTAA.............................................................20185.0085000011000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000001120000000000000000000000000000000000000001001000000000000000110100111100010000002000000000000000000000000000001100011002200000000000000000000000000300201311022000000316000010101210010100001000101000402000221101110010112100
.......................................................................................................................................................TGAAGGCTTTGTATGATTAATT...........................................................22185.00850000000000000000000000000000000000000000000000000000000000000000000000000000011100000000000000000000000000000000000000000000000000000000000000000010010000000000001000001000000000000000000000000000000000000000002000000000000000000000000000010000000001000021000100020000000000000102001010003000021400000004293013627100000001131000
.....................................................................................................................................................TATGAAGGCTTTGTATGATTA..............................................................21173.0073000000000000000000000000000000000000000000000010000000000000000000000000000001000000000000000000000010000200000000000000000000000000000000000000000001000000000000000010000000101010000000000000000000000000000000000000010000110000000000000001010000100000001300100003100110002010001401001100100300210002001003310470000001100101300
.......................................................................................................................................................TGAAGGCTTTGTATGATTAAT............................................................21172.00720000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000001000000000000000000000100000000010000000010003200021100306012200000000000000000001025001100034300020011400
.......................................................................................................................................................TGAAGGCTTTGTATGATTAAA............................................................21170.0070000000000000000000000000000000000000100000000000000000000000000000000000000012010000000000000000000000001200000000000000000000000000000000000000000011000000000000000000100110100000000000001000000000000000000000000000000211000000100000000000000000000000000001201013000120031000000221000101000010000000000302000023300110020002800
.....................................................................................................................................................TATGAAGGCTTTGTATGATTAA.............................................................22161.0061000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000100020000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000001002000100000000000000000100000001002001001100010008011050400001120100000000011000103200033100000000011200
.......................................................................................................................................................TGAAGGCTTTGTATGATTAACCA..........................................................23149.0049000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100100000000000100000000000000000000000000000000000000021000000000000000000000010000000000000000000000000000000000000000000010000000000000100000010000100000000101000012000030013000010010001200000100001000001111001021200111120011000
.........................................................................................................................AATTGTACATGGCTTTCGTA...........................................................................................20149.0049000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000020100010000000000000001000000000000101000000000000001100011200000010210002100000010001000000005200111200210001022500
.......................................................................................................................................................TGAAGGCTTTGTATGATTA..............................................................19145.0045000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000110101000000001000000010000000000000000000000000000000000000000000100010000000000000000201002000000001000010524120001010000100300000110001000100110100001100
.......................................................................................................................................................TGAAGGCTTTGTATGATT...............................................................18145.0045000000000000000000000000000000100100000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000103002000000000000000000000000000000000000000000000000000000001000000000000000101001002001101000000000000111470000000000000200000000000000000601002000000
.....................................................................................................................................................TATGAAGGCTTTGTATGATTAAC............................................................23143.0043000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000020010020000000000000000000000000000000000100000000130004010000010001100000004000100021202100221200000000000300
.......................................................................................................................................................TGAAGGCTTTGTATGATTAAAA...........................................................22143.0043000000000000000000000000000000000000000000100000001000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010000000000000000000000000100000000100000000011100020101010000010001100000200000000032100001331500000010101100
.......................................................................................................................................................TGAAGGCTTTGTATGATTAATA...........................................................22141.0041000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000010000000010100000000000111000000001218001033201200000103400
.......................................................................................................................................................TGAAGGCTTTGTATGATTAAGT...........................................................22140.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000010003000010110000000000000000000001303201110200200000023800
.....................................................................................................................................................TATGAAGGCTTTGTATGATTAC.............................................................22134.0034000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100010000001010100100000000000000000000000100000001000000010002000000100000000200000000002000101100140401011000001000
.......................................................................................................................................................TGAAGGCTTTGTATGATTATT............................................................21132.0032000000000000000000000000000000000000000000000000000000000000000000000000000001110000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000200000000000000000000113000000000000000002000000000000111001000200001021101000000100500
..........................................................................................................................................GTAAAGAAATTTATGAAGGCTTTGT.....................................................................25131.0031000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000600110100000100011000000000000000000000000000002000000000000000000000000000000000000000000000011100000000000000000000000010000000000000000002000000000000000000000000000000000000000000000000000152010000000100000000000000000000000000000
....................................................................................................................AAAC-AATTGTACATGGCTTTCGT............................................................................................23131.0031000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000100000000010001022000000000010010000000000100000000010001101500013000100000000300
......................................................................................................................AC-AATTGTACATGGCTTTCG.............................................................................................20130.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000020000000001000000000001000000000000000000000000000000000001100000000000000000000200000100000012001000110010000000100100000000000100001000001000000100000110002100
......................................................................................................................................................ATGAAGGCTTTGTATGATTATT............................................................22129.0029000000000000000000000000000000000000000000000000000000000000000000000000000011110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000001000000211000001100000020001000001002001300000000300100
......................................................................................................................................................ATGAAGGCTTTGTATGATT...............................................................19129.0029000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001000000000000000000000000000000000010000000000010000000002000000000000000000000000100100000000000000000000000000000000000000000001000000000200000000200000000000001000300001000001000100210210001000
.......................................................................................................................................................TGAAGGCTTTGTATGATTAAAT...........................................................22129.0029000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000000000100000100101000000000001000000101011000000000001000001304000011100210000000200
.....................................................................................................................................................TATGAAGGCTTTGTATGATTAT.............................................................22127.0027000000000000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000100000000000200000000001000000000001000100003000000001010000000001101112200000100101000
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.................................................................................................................AATAAAC-AATTGTACATGGCTTTCG.............................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................TATGAAGGCTTTGTATGATTATA............................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000000000
..................................................A---------AACAA-CA---A------CAACAAAACAATAGAAA-------------AAA.........................................................................................................................2912.002000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................GTACATGGCTTTCGTAAAGA.......................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..A--CAA-A--------------------------------------CCA---------AACAA-CA---A------CAACAAAACAA...............................................................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TTTCGTAAAGAAATTTATGAAGGCTTT.......................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ACAA-CA---A------CAACAAAACAATAGAAA-------------AAAGAA......................................................................................................................3012.002000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CA--CAA-A--------------------------------------CCA---------AACAA-CA---A------CAACAAAACAAT..............................................................................................................................................2912.002000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................GAAATAAAC-AATTGTACATGGCTTTC..............................................................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........A--------------------------------------CCA---------AACAA-CA---A------CAACAAAACAATAGAAA-------------............................................................................................................................2912.002000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................ACAAAACAATAGAAA-------------AAAGAAATAAAC-...............................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................AACAA-CA---A------CAACAAAACAATAGAAA-------------AAA.........................................................................................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................C-AATTGTACATGGCTTTCGTAAAGAAAT....................................................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CAAAACAATAGAAA-------------AAAGAAATAAAC-...............................................................................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................AAATAAAC-AATTGTACATGGCTTTC..............................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................ATGAAGGCTTTGTATGATTAAG............................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000
.....................................................................................ACAATAGAAA-------------AAAGAAATAAAC-AAT............................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................CAA-CA---A------CAACAAAACAATAGA...........................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................AGGCTTTGTATGATTAACA...........................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................TACATGGCTTTCGTAAAGAAATTTAT................................................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..........................................................................................................................................GTAAAGAAATTTATGAAGGCTTTGTAT...................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................ATAGAAA-------------AAAGAAATAAAC-AATTGTAC.......................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................GGCTTTGTATGATTAACCAAAA.......................................................2212.002000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TGAAGGCTTTGTATGATTAGA............................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCA--CAA-A--------------------------------------CCA---------A----ACA---A------CAACAAAACAATAGAAA----------A--AAACAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACCAAAAAAA----TCCTCAAA-TTTGTGTTTTTATTTGCGTTAT---CACGTACAG-TTTTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.......................................................................................................................................................TTAAAGCTTTGTATAATTAACC...........................................................22159.0059943111310
........................................................................................................................................................TAAAGCTTTGTATAATTAACC...........................................................21127.002702005200
........................................................................................................................................................TAAAGCTTTGTATAATTAACCA..........................................................22121.002150104110
.......................................................................................................................................................TTAAAGCTTTGTATAATTAACT...........................................................22117.001711202110
......................................................................................................................AC-AATTGTACATGGCTTTCGTA...........................................................................................22110.00101012330
......................................................................................................................AC-AATTGTACATGGCTTTCGT............................................................................................2119.0091010610
.......................................................................................................................................................TTAAAGCTTTGTATAATTAACCA..........................................................2316.0060100140
.....................................................................................................................AAC-AATTGTACATGGCTTTCGT............................................................................................2216.0061000410
.......................................................................................................................................................TTAAAGCTTTGTATAATTAAC............................................................2115.0051000220
..............................................................................................................................................AGTAATTTATTAAAGCTTTGT.....................................................................2115.0051000400
...............................................................................................................................................GTAATTTATTAAAGCTTTGT.....................................................................2014.0040000400
......................................................................................................................AC-AATTGTACATGGCTTTCG.............................................................................................2014.0041000210
.......................................................................................................................C-AATTGTACATGGCTTTCGT............................................................................................2013.0031000110
.....................................................................................................................................................TATTAAAGCTTTGTATAATT...............................................................2013.0030000030
.......................................................................................................................................TTCGTAAAGTAATTTATTAAAGCTTTG......................................................................2713.0033000000
.......................................................................................................................C-AATTGTACATGGCTTTCGTA...........................................................................................2113.0031000110
.......................................................................................................................................................TTAAAGCTTTGTATAATTAACCT..........................................................2313.0031000020
........................................................................................................................................................TAAAGCTTTGTATAATTAAC............................................................2013.0030000030
....................................................................................................................AAAC-AATTGTACATGGCTTTC..............................................................................................2113.0030201000
....................................................................................................................AAAC-AATTGTACATGGCTTTCGT............................................................................................2313.0031010100
........................................................................................................................................................TAAAGCTTTGTATAATTAACCAA.........................................................2312.0022000000
............................................................................................................................TGTACATGGCTTTCGTAAAGTAATTTATT...............................................................................2912.0021000100
...........................................................................................................................TTGTACATGGCTTTCGTAAAGTAATT...................................................................................2612.0021000100
........................................................................................................................................................TAAAGCTTTGTATAATTAACT...........................................................2112.0021000010
.......................................................................................................................................................TTAAAGCTTTGTATAATTAACA...........................................................2212.0020000020
......................................................................................................................................................ATTAAAGCTTTGTATAATTAAC............................................................2212.0021000100
....................................................................................................................AAAC-AATTGTACATGGCTTTCG.............................................................................................2212.0020000110
.....................................................................................................................AAC-AATTGTACATGGCTTTCGTAAAG........................................................................................2612.0022000000
...........................................................................................................................TTGTACATGGCTTTCGTAAAGTAAT....................................................................................2512.0021010000
..............................................................................................................................TACATGGCTTTCGTAAAGTAATTTATT...............................................................................2712.0021000010
.........................................................................................................................................................AAAGCTTTGTATAATTAACCA..........................................................2112.0020000020
..........................................................................................................................................GTAAAGTAATTTATTAAAGCTTTGT.....................................................................2512.0020000200
.CA--CAA-A--------------------------------------CCA---------A----ACA---A------CAACAAAACAA...............................................................................................................................................2512.0022000000
..............................................................................................................................TACATGGCTTTCGTAAAGTAAT....................................................................................2212.0020010010
........................................................................................................................................................TAAAGCTTTGTATAATTAACTT..........................................................2211.0010000010
....................................................................................................................................................TTATTAAAGCTTTGTATAATTAACCAA.........................................................2711.0011000000
.........................................................................................................................AATTGTACATGGCTTTCGT............................................................................................1911.0010001000
.................................................................................................................AATAAAC-AATTGTACATGGCTTTCGT............................................................................................2611.0010000100
..........................................................................................................................................................AAGCTTTGTATAATTAACC...........................................................1911.0010000010
........................................................................................................................................................TAAAGCTTTGTATAATTA..............................................................1811.0010000010
.......................................................................................................................................................TTAAAGCTTTGTATAATTA..............................................................1911.0010000010
..............................................................................................................................TACATGGCTTTCGTAAAGT.......................................................................................1911.0010000010
..............................................................................................................................................AGTAATTTATTAAAGCTTTGTAT...................................................................2311.0010000100
.......A-A--------------------------------------CCA---------A----ACA---A------CAACAAAACAATAGAAA----------...............................................................................................................................2711.0011000000
..............................................................................................................................TACATGGCTTTCGTAAAGTA......................................................................................2011.0010000100
.................................................................................................................AATAAAC-AATTGTACATGGT..................................................................................................2011.0010001000
.......................................................................................................................C-AATTGTACATGGCTTTCGTT...........................................................................................2111.0010000100
....................................................................................................................................................TTATTAAAGCTTTGTATAATTAAC............................................................2411.0010000100
.......A-A--------------------------------------CCA---------A----ACA---A------CAACAAAACAATAGAAA----------A--............................................................................................................................2811.0011000000
.............................................................................................................................................AAGTAATTTATTAAAGCTTTGTATAAT................................................................2711.0010000100
.......................................................................................................................C-AATTGTACATGGCTTTCGTAA..........................................................................................2211.0011000000
...........................................................................................................................TTGTACATGGCTTTCGTAAA.........................................................................................2011.0011000000
...................................................................................................................................................TTTATTAAAGCTTTGTATAATT...............................................................2211.0011000000
...................................................................................................................TAAAC-AATTGTACATGGCTTTCGTA...........................................................................................2511.0011000000
............................................................................................................AAACAAATAAAC-AATTGTACATGGCTTTC..............................................................................................2911.0011000000
.....................................................................................................................AAC-AATTGTACATGGCTTTC..............................................................................................2011.0010000010
.............................................................................................................................................AAGTAATTTATTAAAGCTTTGT.....................................................................2211.0010000010
......................................................................................................................................................ATTAAAGCTTTGTATAATTAACCAAAA.......................................................2711.0010000010
....................................................................................................................................................TTATTAAAGCTTTGTATAATTAACC...........................................................2511.0010000010
......................................................................................................................................TTTCGTAAAGTAATTTATTAAAGC..........................................................................2411.0011000000
......................................................................................................................................................ATTAAAGCTTTGTATAATTAACCA..........................................................2411.0010000100
.......................................................................................................................C-AATTGTACATGGCTTTCGTAAA.........................................................................................2311.0010000010
.......A-A--------------------------------------CCA---------A----ACA---A------CAACAAAACAATAGAA..........................................................................................................................................2611.0011000000
.............................................................................................................AACAAATAAAC-AATTGTACATGGCT.................................................................................................2511.0011000000
......................................................................................................................AC-AATTGTACATGGCTTTC..............................................................................................1911.0010100000
.......................................................................................................................................TTCGTAAAGTAATTTATTAAAGCTTTGT.....................................................................2811.0011000000
...............................................................................................................................ACATGGCTTTCGTAAAGTAATTT..................................................................................2311.0011000000
...............................................................................................................................ACATGGCTTTCGTAAAGTAAT....................................................................................2111.0011000000
................................................................................................................AAATAAAC-AATTGTACATGGCTTTC..............................................................................................2511.0010100000
............................................................................................................AAACAAATAAAC-AATTGTACATGGC..................................................................................................2511.0011000000
.......A-A--------------------------------------CCA---------A----ACA---A------CAACAAAACAATAGA...........................................................................................................................................2511.0011000000
..................................................................................................................................TGGCTTTCGTAAAGTAATTTATTAAAGC..........................................................................2811.0011000000
..................................................................................................................ATAAAC-AATTGTACATGGCTTTC..............................................................................................2311.0011000000
....................................................................................................................................................TTATTAAAGCTTTGTATAATTA..............................................................2211.0010000010
......................................................................................................................................................ATTAAAGCTTTGTATAATT...............................................................1911.0010000100
..............................................................................................................................TACATGGCTTTCGTAAAGTAATTTAT................................................................................2611.0011000000
.........................................................................................................................................................AAAGCTTTGTATAATTAACCAAA........................................................2311.0010000010
..........................................................................................................................................................AAGCTTTGTATAATTAACCA..........................................................2011.0010000010
.....................................................................................................................................................TATTAAAGCTTTGTATAATTA..............................................................2111.0011000000
.......................................................................................................................................................TTAAAGCTTTGTATAATTAA.............................................................2011.0011000000
.............................................................................................................AACAAATAAAC-AATTGTACATGGCTT................................................................................................2611.0011000000
........................................................................................................................................................TAAAGCTTTGTATAATTAACA...........................................................2111.0010000010
.........................................................................................................A--AAACAAATAAAC-AATTGTACATGGCT.................................................................................................2711.0011000000
............................................................................................................................TGTACATGGCTTTCGTAAAGTAATT...................................................................................2511.0011000000
...................................................................................................................TAAAC-AATTGTACATGGCTTTCG.............................................................................................2311.0010000010
......................................................................................................................................................ATTAAAGCTTTGTATAATTAACT...........................................................2311.0010000010
...................................................................................................................TAAAC-AATTGTACATGGCTTTCGT............................................................................................2411.0010000001
.................................................................................................................AATAAAC-AATTGTACATGGCT.................................................................................................2111.0011000000
.............................................................................................................................GTACATGGCTTTCGTAAAGTAATT...................................................................................2411.0011000000
................................................................................................................AAATAAAC-AATTGTACATGGCTTTCGT............................................................................................2711.0011000000
.........................................................................................................................AATTGTACATGGCTTTCGTA...........................................................................................2011.0010001000
......................................................................................................................................................ATTAAAGCTTTGTATAATTAGT............................................................2220.5010000100
droYak3
CCG--TCAAA--------------------------------------CCA---------A----ACA---A------CAACAAAACAATAGAAGA---------AAAAAACAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACCAAAAAAAAA--TCCTCAAA-TTTGTGTTTTCATTTGCGTTAT---CACGTACAG-TTTTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.......................................................................................................................................................TTAAAGCTTTGTATAATTAACC...........................................................22127.002786911020000
..............................................................................................................................................AGTAATTTATTAAAGCTTTGT.....................................................................2117.00701000060000
........................................................................................................................................................TAAAGCTTTGTATAATTAACC...........................................................2116.00622000020000
........................................................................................................................................................TAAAGCTTTGTATAATTAACCA..........................................................2216.00604000200000
.......................................................................................................................................................TTAAAGCTTTGTATAATTAACT...........................................................2216.00632000010000
.....................................................................................................................AAC-AATTGTACATGGCTTTCGT............................................................................................2214.00401200010000
.......................................................................................................................................................TTAAAGCTTTGTATAATTAAC............................................................2113.00302000100000
......................................................................................................................................................ATTAAAGCTTTGTATAATTAAC............................................................2213.00301100100000
...........................................................................................................................TTGTACATGGCTTTCGTAAAGT.......................................................................................2212.00200000110000
.....................................................................................................................................................TATTAAAGCTTTGTATAATT...............................................................2012.00202000000000
..........................................................................................................................................GTAAAGTAATTTATTAAAGCTTTGT.....................................................................2512.00200000020000
.........................................................................................................................AATTGTACATGGCTTTCGTAA..........................................................................................2112.00201000010000
........................................................................................................................................................TAAAGCTTTGTATAATTAAC............................................................2012.00201100000000
......................................................................................................................AC-AATTGTACATGGCTTTCGTA...........................................................................................2212.00202000000000
..............................................................................................................................TACATGGCTTTCGTAAAGTAATTT..................................................................................2412.00202000000000
......................................................................................................................AC-AATTGTACATGGCTTTCGT............................................................................................2112.00202000000000
.................................................................................................................AATAAAC-AATTGTACATGGCTTTCGT............................................................................................2612.00201000010000
.......................................................................................................................C-AATTGTACATGGCTTTCGTAA..........................................................................................2212.00201000010000
..........................................................................................................................ATTGTACATGGCTTTCGT............................................................................................1811.00100001000000
......................................................................................................................AC-AATTGTACATGGCTTTC..............................................................................................1911.00101000000000
..........................................................................................................................................................AAGCTTTGTATAATTAACCAAA........................................................2211.00101000000000
..................................................................................................................................................ATTTATTAAAGCTTTGTATA..................................................................2011.00100000010000
............................................................................................................................................AAAGTAATTTATTAAAGCTTTGT.....................................................................2311.00100000010000
.....................................................................................................................AAC-AATTGTACATGGCTTTCG.............................................................................................2111.00100001000000
.........................................................................................................................................................AAAGCTTTGTATAATTAACCA..........................................................2111.00100000010000
................................................................................................................AAATAAAC-AATTGTACATGGCTTTC..............................................................................................2511.00100100000000
.................................................................................................................AATAAAC-AATTGTACATGGCTTTC..............................................................................................2411.00101000000000
....................................................................................................................AAAC-AATTGTACATGGCTTTC..............................................................................................2111.00101000000000
.......................................................................................................................................................TTAAAGCTTTGTATAATTAACCT..........................................................2311.00101000000000
....................................................................................................................AAAC-AATTGTACATGGCTTTCGT............................................................................................2311.00100000010000
.......................................................................................................................................................TTAAAGCTTTGTATAATTAA.............................................................2011.00101000000000
............................................................................................................................................................GCTTTGTATAATTAACCAAAAAAAA...................................................2511.00101000000000
..............................................................................................................ACAAATAAAC-AATTGTACATGGC..................................................................................................2311.00101000000000
......................................................................................................................................................ATTAAAGCTTTGTATAATTAA.............................................................2111.00101000000000
.........................................................................................................................AATTGTACATGGCTTTCGTAT..........................................................................................2111.00101000000000
................................................................................................................................................TAATTTATTAAAGCTTTGTATA..................................................................2211.00100000010000
..........................................................................................................................................GTAAAGTAATTTATTAAAGCTTTGTATA..................................................................2811.00101000000000
......................................................................................................................................................ATTAAAGCTTTGTATAATC...............................................................1911.00100100000000
...............................................................................................................................................GTAATTTATTAAAGCTTTGT.....................................................................2011.00100000010000
....................................................................................................................AAAC-AATTGTACATGGCT.................................................................................................1811.00100100000000
.......................................................................................................................C-AATTGTACATGGCTTTCGTC...........................................................................................2111.00101000000000
................................................................................................................AAATAAAC-AATTGTACAT.....................................................................................................1811.00101000000000
......................................................................................................................................................ATTAAAGCTTTGTATAATTAACC...........................................................2311.00100100000000
.....................................................................................................................AAC-AATTGTACATGGCTTTC..............................................................................................2011.00100100000000
.................................................................................................................................................................................................TTTGTGTTTTCATTTGCGTT...................2011.00100000010000
.................................................................................................................................................AATTTATTAAAGCTTTGT.....................................................................1811.00100010000000
..........................................................................................................................................................AAGCTTTGTATAATTAACCA..........................................................2011.00101000000000
..................................................................................................................ATAAAC-AATTGTACATGGCTTTC..............................................................................................2311.00100100000000
.............................................................................................................................................AAGTAATTTATTAAAGCTTTGT.....................................................................2211.00100000010000
..................................................................................................................ATAAAC-AATTGTACATGGCTTTCG.............................................................................................2411.00100000010000
droEug1
CCA--CAAAA--------------------------------------CCA---------ACCAACCA---A------CAACAAAACAATAGAAA----------AAAAATCAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAA----ACCTCAAA-TTTGTGTTTTCATTTGCGTTAT---CACGTACAG-TTTTSizeHit CountTotal NormTotal
No Reads
droBia1
CCA--CAAAA--------------------------------------CCA---------A----CCA---A------CAAGAAATCCATAGAAA----------A---AA-CAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAAAC--AACCAAAA-TTTGTGTTTTTATTTGCGTTAT---CACGTACCG-TTTTSizeHit CountTotal NormTotal
No Reads
droTak1
CTA--TAAAA--------------------------------------CCA---------ACCAACCA---A------CAAGAAAACAATAGAAA-------------AAACAAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAAAAAAAAAA-----ACCTCAAA-TTTGTGTTTTTATTTGCGTTAT---CACGTACAA-TTTTSizeHit CountTotal NormTotal
No Reads
droEle1
CCA--CAAAA--------------------------------------GCA--TCCACCAA----CCA---G------C-----AACAATAAAAA-------------AAACAAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAGA---ACCCCAAA-TTTGTGTTTTTATTTGCGTTAT---CACGTAAAA-TTTTSizeHit CountTotal NormTotal
No Reads
droRho1
CCA--CAAAA--------------------------------------CCA---------ACCAACCA---A------CATCAAAACAATAGAAA----------A--AAACAAATAAAC-AATTGTACACGGCTTTCGTAAAGCAATTTATTGAAGCTTTGTATAATTAACAAAAAAAA----ACCTCAAA-TTTGTGTTTTTATTTGCGTCAT---CACGTACAA-TTTTSizeHit CountTotal NormTotal
No Reads
droFic1
CCA--CAAAG--------------------------------------CCA--ACCACCAA----CCA---A------CCACAAAACAATAGAAA--------------AACAAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAA----ACCTCCAA-ATTGTGTTTTTATTTGCCTTAT---CACGTACCA-TTTTSizeHit CountTotal NormTotal
No Reads
droKik1
CCA--CAAAA--------------------------------------CCA---------ACCAACCA---T------CAACAAAACAATAGAAGA-AA------AAAAACAAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAAAAAAAAGAAC---AACCAAAA-TTTGTGTTTTTATTTGCCTTAT---CACGTACAC-TTTTSizeHit CountTotal NormTotal
No Reads
droAna3
TGA--AAA-A------------GAAAT---------C--------AACC-------CTCAA----CCA---A------CCACAAAGCAATAGAAA-----------------AAATAAAC-AATTGTACACGGCTTTCGTAAAGTGATTTATTAAAGCCTTGTATAATTAAGAAAAACAA--------CAAA-TTTGTGTTTTTATTT------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................................................................................TTAAAGCCTTGTATAATTAAGA...........................................................22130.003000011019
.......................................................................................................................................................TTAAAGCCTTGTATAATTAAG............................................................21117.00173000113
........................................................................................................................................................TAAAGCCTTGTATAATTAAGA...........................................................2118.008000116
.....................................................................................................................AAC-AATTGTACACGGCTTTCGT............................................................................................2217.007401020
.......................................................................................................................................................TTAAAGCCTTGTATAATTAAGT...........................................................2215.005000113
........................................................................................................................................................TAAAGCCTTGTATAATTAAG............................................................2015.005000005
......................................................................................................................................................ATTAAAGCCTTGTATAATTAA.............................................................2114.004000103
......................................................................................................................AC-AATTGTACACGGCTTTCGTA...........................................................................................2214.004200110
......................................................................................................................AC-AATTGTACACGGCTTTCGT............................................................................................2114.004200020
....................................................................................................................AAAC-AATTGTACACGGCTTTC..............................................................................................2113.003030000
.....................................................................................................................AAC-AATTGTACACGGCTTTCG.............................................................................................2112.002000110
.....................................................................................................................AAC-AATTGTACACGGCTTTC..............................................................................................2012.002110000
......................................................................................................................................................ATTAAAGCCTTGTATAATTAAG............................................................2212.002100010
.....................................................................................................................AAC-AATTGTACACGGCTTTCGTT...........................................................................................2311.001100000
................................................................................................................................CACGGCTTTCGTAAAGTGATTT..................................................................................2211.001000010
.........................................................................................................................................................AAAGCCTTGTATAATTAAGA...........................................................2011.001000001
........................AAT---------C--------AACC-------CTCAA----CCA---A------CCACAAA...................................................................................................................................................2411.001010000
...................................................................................................................TAAAC-AATTGTACACGGCTTTCGT............................................................................................2411.001000010
................................................................................................................................CACGGCTTTCGTAAAGTGATT...................................................................................2111.001100000
...................................................................................................................................................................ATAATTAAGAAAAACAA--------CAAA-TTTGTGTT...............................2911.001000010
....................................................................................................................AAAC-AATTGTACACGGCTTTCGT............................................................................................2311.001100000
.....................................................................................................................................................TATTAAAGCCTTGTATAATT...............................................................2011.001000001
.....................................................................................................................AAC-AATTGTACACGGCTTTCGC............................................................................................2211.001010000
..................................................................................................................ATAAAC-AATTGTACACGGC..................................................................................................1911.001010000
................................................................................................................AAATAAAC-AATTGTACACGGC..................................................................................................2111.001010000
........................................................................................................................................................TAAAGCCTTGTATAATTAAGTT..........................................................2211.001000001
.......................................................................................................................C-AATTGTACACGGCTTTCGT............................................................................................2011.001100000
..........................................................................................................................ATTGTACACGGCTTTCGTA...........................................................................................1911.001100000
...................................................................................................................................................................ATAATTAAGAAAAACAA--------CAAA-TTTGT..................................2611.001010000
........................................................................................................................................................TAAAGCCTTGTATAATTAAGT...........................................................2111.001000001
.......................................................................................................................................................TTAAAGCCTTGTATAATTAA.............................................................2011.001000001
.......................................................................................................................................................TTAAAGCCTTGTATAATTAAC............................................................2111.001000001
........................................................................................................................................................TAAAGCCTTGTATAATTAAGAAAAA.......................................................2511.001100000
....................................................................................................................AAAC-AATTGTACACGGCTTTCG.............................................................................................2211.001000010
.................................................................................................................AATAAAC-AATTGTACACGGCTTTC..............................................................................................2411.001010000
.....AAA-A------------GAAAT---------C--------AACC-------CTCAA----.......................................................................................................................................................................1911.001100000
........................................................................................................................................................TAAAGCCTTGTATAATTAAGAT..........................................................2211.001000001
.......................................................................................................................C-AATTGTACACGGCTTTCGTA...........................................................................................2111.001100000
..........................................................................................................................................GTAAAGTGATTTATTAAAGCCTTGT.....................................................................2511.001000010
.................................................................................................................................................GATTTATTAAAGCCTTGC.....................................................................1820.501010000
droBip1
ACA--AAA-G--------------------------------------AAA--TCCCTCAA----CCA---A------CCACAAAGCAATAGAAA-----------------AAATAAAC-AATTGTACACGGCTTTCGTAAAGTGATTTATTAAAGCCTTGTATAATTAACAAAAACAA--------CAAA-TTTGTGTTTTTATTT------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CCTTACAA-A--------------------------------------CCAAATCCAT-------TCAACAG--------AAAAAACAATAGAAGA-ACAAAAA-AAAAAGAAAATAAAA-AATTGTACACGGCTTTTATGAAGTAATTTGTTAAAGCTTTGTATGATTAAACAAAAAAAAA--AAACCAAA-TTTGTGTTTTTATTTGCATTTTTTACCCGTTTAC-TTTTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.......................................................................................................................A-AATTGTACACGGCTTTTATGA..........................................................................................2213.0030110000001
.......................................................................................................................A-AATTGTACACGGCTTTTATG...........................................................................................2113.0030300000000
..........................................................................................................................................................AAGCTTTGTATGATTAAACT..........................................................2012.0020200000000
.......................................................................................................................A-AATTGTACACGGCTTTTAT............................................................................................2012.0020200000000
......................................................................................................................................................GTTAAAGCTTTGTATGATTAAA............................................................2212.0020200000000
.....................................................................................................................................................TGTTAAAGCTTTGTATGATT...............................................................2011.0010000100000
..............................................................................................................................TACACGGCTTTTATGAAGTAATTTGC................................................................................2611.0010010000000
.....................................................TCCAT-------TCAACAG--------AAAAAACAATAGAAG.........................................................................................................................................2711.0010100000000
......................................................................................................................................TTTTATGAAGTAATTTGTTA..............................................................................2011.0010100000000
.........................................................T-------TCAACAG--------AAAAAACAATAGAAGA-ACA....................................................................................................................................2711.0010100000000
...............................................................................................................AAAATAAAA-AATTGTACACGGC..................................................................................................2211.0010010000000
.......................................................................................................................................................TTAAAGCTTTGTATGATTAAAC...........................................................2211.0010100000000
........................................................................................................................................TTATGAAGTAATTTGTTAAA............................................................................2011.0010100000000
......................................................................................................................AA-AATTGTACACGGCTTTTATG...........................................................................................2211.0010100000000
.......................................................................................................................................................TTAAAGCTTTGTATGATTAAACA..........................................................2311.0010000000001
........................................................................................................................................................TAAAGCTTTGTATGATTAA.............................................................1911.0010100000000
..........................................................................................................................................................AAGCTTTGTATGATTAAAC...........................................................1911.0010000010000
................................................................................................................................................TAATTTGTTAAAGCTTTGTATGA.................................................................2311.0010000100000
...................................................................AACAG--------AAAAAACAATAGAAGA-AC.....................................................................................................................................2311.0010100000000
.......................................................................................................................................................TTAAAGCTTTGTATGATTT..............................................................1911.0010100000000
...................................................................................................................................................TTTGTTAAAGCTTTGTATGATT...............................................................2211.0010100000000
..........................................................................................................................ATTGTACACGGCTTTTATGA..........................................................................................2011.0010010000000
.........................................................................................................................................................AAAGCTTTGTATGATTAAA............................................................1911.0010000100000
....................................................................................................................................................TTGTTAAAGCTTTGTATGATT...............................................................2111.0010100000000
..................................................................................................................ATAAAA-AATTGTACACGGCT.................................................................................................2011.0010000010000
....................................................................................................................AAAA-AATTGTACACGGCT.................................................................................................1811.0010000100000
......................................................................................................................................................GTTAAAGCTTTGTATGATTA..............................................................2011.0010000001000
........................................................................................................................................................TAAAGCTTTGTATGATTAAAC...........................................................2111.0010000000001
droPer2
CCTTACAA-A--------------------------------------CCAAATCCAT-------TCAACAG--------AAAAAACAATAGAAGA-ACAAAAA-AAAAAGAAAATAAAA-AATTGTACACGGCTTTTATGAAGTAATTTGTTAAAGCTTTGTATGATTAAACAAAAAAAAAAAACCCCAAA-TTTGTGTTTTTATTTGCATTTTGTAACCGTTTACTTTTTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.....................................................................................................................................................TGTTAAAGCTTTGTATGATTAAACAAA........................................................2711.001010000
.......................................................................................................................................................TTAAAGCTTTGTATGATTAAAC...........................................................2211.001010000
...TACAA-A--------------------------------------CCAAATCCAT-------TCAACA.................................................................................................................................................................2211.001010000
..................................................................................................................................................ATTTGTTAAAGCTTTGTATGAT................................................................2211.001000001
.....................................................................................................................................................TGTTAAAGCTTTGTATGATT...............................................................2011.001010000
.......................................................................................................................................TTTATGAAGTAATTTGTTAAAGC..........................................................................2311.001001000
..................................................................................................................................................ATTTGTTAAAGCTTTGTATGATTA..............................................................2411.001000010
............................................................................................................................................................................CAAAAAAAAAAAACCCCAAA-.......................................2020.501010000
droWil2
AAC--CAAAACAAAAGAAAAGAAAAGTTTAAAAAATCAAAACAA----CCA---------A----CCAA--C------CAACAAAACAATAGAAA------------------AATAAAC-AATTGTACACGGCTTTTATAAAGTAATTTATTAAAGCTTTGTATAATTACCCAAAAAAAAAAACCCAAAAA-TTTTTGTTTTTATTTG-----------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
........................................................................................................................................................TAAAGCTTTGTATAATTACCC...........................................................21131.0031204052
.......................................................................................................................................................TTAAAGCTTTGTATAATTACCC...........................................................22130.0030202044
.......................................................................................................................................................TTAAAGCTTTGTATAATTACC............................................................21125.0025171043
........................................................................................................................................................TAAAGCTTTGTATAATTACCCA..........................................................22122.002207087
........................................................................................................................................................TAAAGCTTTGTATAATTACC............................................................20112.001240125
.....................................................................................................................AAC-AATTGTACACGGCTTTTAT............................................................................................2217.00710042
......................................................................................................................AC-AATTGTACACGGCTTTTATA...........................................................................................2216.00601032
......................................................................................................................................................ATTAAAGCTTTGTATAATTACC............................................................2216.00640020
.......................................................................................................................................................TTAAAGCTTTGTATAATTACT............................................................2114.00420011
...........................................................................................................................TTGTACACGGCTTTTATAAAGT.......................................................................................2213.00310002
......................................................................................................................AC-AATTGTACACGGCTTTTAT............................................................................................2113.00302001
.......................................................................................................................................................TTAAAGCTTTGTATAATTACCT...........................................................2213.00330000
......................................................................................................................................................ATTAAAGCTTTGTATAATTACT............................................................2213.00311100
..............................................................................................................................................AGTAATTTATTAAAGCTTTGT.....................................................................2112.00200020
.......................................................................................................................................................TTAAAGCTTTGTATAATTACG............................................................2112.00200002
........................................................................................................................................................TAAAGCTTTGTATAATTACCT...........................................................2112.00220000
..................................................................................................................ATAAAC-AATTGTACACGGCT.................................................................................................2012.00200020
........................................................................................................................................................TAAAGCTTTGTATAATTACA............................................................2012.00200002
..................................................................................................................ATAAAC-AATTGTACACGGCTT................................................................................................2112.00201010
.................................................................................................................AATAAAC-AATTGTACACGGCTT................................................................................................2212.00200200
.......................................................................................................................C-AATTGTACACGGCTTTTATA...........................................................................................2111.00101000
........................................................................................................................................................TAAAGCTTTGTATAATTACCA...........................................................2111.00100001
.................................AATCAAAACAA----CCA---------A----CCAA--C------CAACA.....................................................................................................................................................2511.00101000
................................................................................ACAAAACAATAGAAA------------------AATAAAC-AAT............................................................................................................2511.00101000
.............................................................................................................................................................CTTTGTATAATTACCCAAA........................................................1911.00101000
...........................................................................................................................TTGTACACGGCTTTTATAAAGTAATT...................................................................................2611.00100001
.........................................................................................................................AATTGTACACGGCTTTTAT............................................................................................1911.00100010
.........................................................................................................................................................AAAGCTTTGTATAATTACC............................................................1911.00100010
.......................................................................................................................................................TTAAAGCTTTGTATAATTAC.............................................................2011.00110000
.........................................................................................................................................................AAAGCTTTGTATAATTACCCT..........................................................2111.00101000
.....................................................................................................................AAC-AATTGTACACGGCTTTT..............................................................................................2011.00101000
....................................................................................................................AAAC-AATTGTACACGGCTTTTAT............................................................................................2311.00100010
......................................................................................................................................................ATTAAAGCTTTGTATAATTACCC...........................................................2311.00100010
....................................CAAAACAA----CCA---------A----CCAA--C------CAACAA....................................................................................................................................................2311.00100100
........................................................................................................................................................TAAAGCTTTGTATAATTACCCAA.........................................................2311.00100010
..................................................................................................................................................ATTTATTAAAGCTTTGTATAATTACC............................................................2611.00101000
............................TAAAAAATCAAAACAA----CCA---------A----CCAA--C------..........................................................................................................................................................2511.00101000
.....................................................................................................................................................TATTAAAGCTTTGTATAATTACA............................................................2311.00100010
.........................................................................................................................................................AAAGCTTTGTATAATTACCC...........................................................2011.00100010
...............................AAAATCAAAACAA----CCA---------A----CCAA--C------CAAC......................................................................................................................................................2611.00101000
...................................................................................................................TAAAC-AATTGTACACGGCTT................................................................................................2011.00100010
......AAAACAAAAGAAAAGAAAAGTTT...........................................................................................................................................................................................................2311.00100100
...........................................................................................................................TTGTACACGGCTTTTATAAAGTAAT....................................................................................2511.00100001
............................................................................................AAA------------------AATAAAC-AATTGTACACGGCTTT...............................................................................................2611.00100010
.........................................................................................TAGAAA------------------AATAAAC-AATTGTACACGGCT.................................................................................................2711.00101000
..........................................................................................................................................................AAGCTTTGTATAATTACCCA..........................................................2011.00100010
.....................................................................................................................................................TATTAAAGCTTTGTATAATTACT............................................................2311.00100010
....................................................................................AACAATAGAAA------------------AATAAAC-AATTGTACA......................................................................................................2711.00101000
.............AAGAAAAGAAAAGTTTAAAAA......................................................................................................................................................................................................2111.00100010
......................................................................................................................................................ATTAAAGCTTTGTATAAT................................................................1811.00100010
.....................................................................................................................................................TATTAAAGCTTTGTATAATTAC.............................................................2211.00100010
...........................................................................................................................TTGTACACGGCTTTTATAAAGTA......................................................................................2311.00110000
.............................................................................................................................GTACACGGCTTTTATAAAGTAATTT..................................................................................2511.00101000
........................................................................................................................................................TAAAGCTTTGTATAATTACCCT..........................................................2211.00110000
...................................................................................................................................................TTTATTAAAGCTTTGTATAATTACC............................................................2511.00100010
...........................................................................................................................TTGTACACGGCTTTTATAA..........................................................................................1911.00101000
....................................................................................................................................................TTATTAAAGCTTTGTATAATTACC............................................................2411.00110000
.............................................................................................AA------------------AATAAAC-AATTGTACACGGCT.................................................................................................2311.00100010
........................................................................................................................................................TAAAGCTTTGTATAATTAC.............................................................1911.00100001
.....................................................................................................................................................TATTAAAGCTTTGTATAATT...............................................................2011.00100010
...........................................................................................................................TTGTACACGGCTTTTATAAAG........................................................................................2111.00101000
........................................................................................................................................................TAAAGCTTTGTATAATTACCTT..........................................................2211.00100001
...............................AAAATCAAAACAA----CCA---------A----CCAA--C------CAACA.....................................................................................................................................................2711.00101000
.........................................................................................................................................................AAAGCTTTGTATAATTACCCA..........................................................2111.00101000
..........................................................................................................................ATTGTACACGGCTTTTATA...........................................................................................1911.00100010
.............................................................................................................................................AAGTAATTTATTAAAGCTTTGT.....................................................................2211.00100010
.......................................................................................................................................................TTAAAGCTTTGTATAATTACA............................................................2111.00100001
.........................................................................................TAGAAA------------------AATAAAC-AATTGTACACGGC..................................................................................................2611.00101000
........................................................................................................................................................TAAAGCTTTGTATAATTACCG...........................................................2111.00100001
.......................................................................................................................................................TTAAAGCTTTGTATAATTACCA...........................................................2211.00100001
..................................................................................................................ATAAAC-AATTGTACACGGCTTTT..............................................................................................2311.00100010
AAC--CAAAACAAAAGAAAAGAAAAGT.............................................................................................................................................................................................................2511.00100100
.....................................................................................................................................................TATTAAAGCTTTGTATAATTATT............................................................2320.50110000
.......................................................................................................................................................TTAAAGCTTTGTATAATTACTT...........................................................2220.50100001
.......................................................................................................................................................TTAAAGCTTTGTATAATTATT............................................................2150.20100001
......................................................................................................................................................ATTAAAGCTTTGTATAATTATT............................................................2250.20101000
droVir3
AC----AA-C--------------------------------------CCA---------A----CCA---A------CA--AAAACAATAGAAAA-AAAAACATAAAAAAAAAATAAATAAATTGTACACGGCTTTCGTAAAGAAATTTATTGAAGCTTTGTATAATTAACAAAAAAAAAA-ACCTTGAAC-TTTGTGTTTTTATTT------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................................................................................TTGAAGCTTTGTATAATTAACA...........................................................22124.00240030000000000012010100000001310000000001000000000000000000001200000010240000000
........................................................................................................................................................TGAAGCTTTGTATAATTAACA...........................................................2119.0090021000000000020000000101000000100000000000000001000000000000000000000000000000
.......................................................................................................................................................TTGAAGCTTTGTATAATTAAC............................................................2117.0070100000000000000000000000000000000000010000000000000000000002100000000011000000
.......................................................................................................................................................TTGAAGCTTTGTATAATTAACT...........................................................2217.0070100000000000000000000000000001000000000000000000010000000000000000003010000000
......................................................................................................................ATAAATTGTACACGGCTTTCG.............................................................................................2116.0060110100000000000000000000000010001000000000000000000000000000000000001000000000
.......................................................................................................................TAAATTGTACACGGCTTTCGT............................................................................................2115.0050010000000000000000000002000001000000000000000000000000000001000000000000000000
.......................................................................................................................................................TTGAAGCTTTGTATAATTAACC...........................................................2215.0050000000000000000000001000000000000000001000000000000000000000000000030000000000
......................................................................................................................ATAAATTGTACACGGCTTTCGT............................................................................................2213.0030010000000000000000000000000100100000000000000000000000000000000000000000000000
...................................................................................................................................................TTTATTGAAGCTTTGTATAATTAACA...........................................................2613.0030000000000000010000000000000000000000000000000000000000000000001000001000000000
.......................................................................................................................................................TTGAAGCTTTGTATAATTA..............................................................1913.0030000000000000000000000100000000000000000000000000000000000002000000000000000000
......................................................................................................................................................ATTGAAGCTTTGTATAAT................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000020000000
........................................................................................................................AAATTGTACACGGCTTTCGTA...........................................................................................2112.0020010000000000000010000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................ATTGAAGCTTTGTATAATTAA.............................................................2112.0020010000000000010000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................ATTGAAGCTTTGTATAATTA..............................................................2012.0020000000000000000000000100000100000000000000000000000000000000000000000000000000
.......................................................................................................................TAAATTGTACACGGCTTTCGTA...........................................................................................2212.0020000000000000000010010000000000000000000000000000000000000000000000000000000000
.........................................................................................................................AATTGTACACGGCTTTCGT............................................................................................1912.0020000010000000000000000000001000000000000000000000000000000000000000000000000000
.............................................................................................................................................AAGAAATTTATTGAAGCTTTGT.....................................................................2212.0020010000000000000000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................TGAAGCTTTGTATAATTAAC............................................................2012.0020000000000000000010000100000000000000000000000000000000000000000000000000000000
...........................................................................................................AAAAAAAATAAATAAATTGTACACGGC..................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000200000000
.....................................................................................................................................................TATTGAAGCTTTGTATAATTA..............................................................2112.0020010000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................................................................ATAAATAAATTGTACACGGCTT................................................................................................2211.0010000000000000000000000000000000000001000000000000000000000000000000000000000000
AC----AA-C--------------------------------------CCA---------A----CCA---A------CA--AAAACAATA.............................................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TGAAGCTTTGTATAATTAAA............................................................2011.0010000000000000000100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AGAAATTTATTGAAGCTTT.......................................................................1911.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
................................................................................................................AAATAAATAAATTGTACACGGC..................................................................................................2211.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................ATTGAAGCTTTGTATAATTAAC............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000010000000000
..............................................................................................................................TACACGGCTTTCGTAAAGAAATTTAT................................................................................2611.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
..............................................................................................................................TACACGGCTTTCGTAAAGAAATTTATT...............................................................................2711.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AATAAATTGTACACGGCTTTC..............................................................................................2111.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AATAAATTGTACACGGCTTTCG.............................................................................................2211.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................ATTGAAGCTTTGTATAATTAACT...........................................................2311.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TTGAAGCTTTGTATAATTAAAG...........................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................AAATTGTACACGGCTTTCGT............................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................ATTGAAGCTTTGTATAATTAACA...........................................................2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
.................................................................................................................................................AATTTATTGAAGCTTTGTAA...................................................................2011.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TTGAAGCTTTGTATAATTAACAAA.........................................................2411.0010000100000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................AAGCTTTGTATAATTAACA...........................................................1911.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................................AAATTTATTGAAGCTTTG......................................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................ATAAATTGTACACGGCTTTC..............................................................................................2011.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
........................................................................................................................AAATTGTACACGGCTTTCGTC...........................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................TTATTGAAGCTTTGTATAAA................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TGAAGCTTTGTATAATTAA.............................................................1911.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................TCGTAAAGAAATTTATTGAAGCTTT.......................................................................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................AATTTATTGAAGCTTTGTATAATTAA.............................................................2611.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................AAAATAAATAAATTGTACACGGC..................................................................................................2311.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TTGAAGCTTTGTATAATTAACTT..........................................................2311.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................GGCTTTCGTAAAGAAATTTATTGAAG...........................................................................2611.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................AAATTTATTGAAGCTTTGTAT...................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................AATTGTACACGGCTTTCGTAAA.........................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................AAAGAAATTTATTGAAGCTTTGT.....................................................................2311.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................AAGAAATTTATTGAAGCTTTG......................................................................2111.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................GGCTTTCGTAAAGAAATTTATTGAA............................................................................2511.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ACAATAGAAAA-AAAAACATAAAA...........................................................................................................................2311.0010000000000000000100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TAAATAAATTGTACACGGCTTTCGTAA..........................................................................................2711.0010000000000000000000000001000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TTGAAGCTTTGTATAATT...............................................................1811.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
..................................................................................................................................................ATTTATTGAAGCTTTGTATAATT...............................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
..........................................................................................................................................GTAAAGAAATTTATTGAAGCTTT.......................................................................2311.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................ATTGAAGCTTTGTATAATTTT.............................................................2120.5010000010000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TGAAGCTTTGTATAATTAACT...........................................................2120.5010000000000000000010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TTGAAGCTTTGTATAATTT..............................................................1920.5010000000000000000000100000000000000000000000000000000000000000000000000000000000
droMoj3
AAA--CAAAATGAAAGAAAGAAGAGAT---------G--------AACCCA---------A----CCA---ACAACAAAAAAAAACCAATAGAAAAAACTAAAA-AAAAAAAAAATAAAC-AATTGTACACTGCTTTCGTAAAGAAATTTATTGAAGCTTTGTATAATTAAAAAAAAAAA----AACTGAACTTTTGTGTTTTTATTTGATTTATT--TACATACA------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.....................................................................................................................................................TATTGAAGCTTTGTATAATT...............................................................2015.005400001
......................................................................................................................AC-AATTGTACACTGCTTTCGTA...........................................................................................2213.003100110
.................AAGAAGAGAT---------G--------AACCCA---------A----CCA---ACA..............................................................................................................................................................2411.001000001
.......................................................................................................................................................TTGAAGCTTTGTATAATTAAA............................................................2111.001000100
..................................................................................................................ATAAAC-AATTGTACACTGCTTTCGT............................................................................................2511.001000001
......................................................................................................................................................ATTGAAGCTTTGTATAATTAT.............................................................2111.001001000
.....................................................................................................................................................TATTGAAGCTTTGTATAATTA..............................................................2111.001100000
......................GAGAT---------G--------AACCCA---------A----CCA---ACA..............................................................................................................................................................1911.001010000
..................AGAAGAGAT---------G--------AACCCA---------A----CCA---ACAAC............................................................................................................................................................2511.001100000
............................................................................................................................................AAAGAAATTTATTGAAGCTTTGT.....................................................................2311.001000001
......................................................................................................................AC-AATTGTACACTGCTTTCG.............................................................................................2011.001001000
...............GAAAGAAGAGAT---------G--------AACCCA---------A----CCA---AC...............................................................................................................................................................2511.001000010
......................................................................................................................................................ATTGAAGCTTTGTATAATTA..............................................................2011.001100000
.......................................................................................................................................................TTGAAGCTTTGTATAATTC..............................................................1911.001100000
.......................................................................................................................C-AATTGTACACTGCTTTCGTAA..........................................................................................2211.001100000
.............................................................................................................................................AAGAAATTTATTGAAGCTTTGT.....................................................................2211.001000001
.........ATGAAAGAAAGAAGAGAT---------....................................................................................................................................................................................................1811.001100000
............................................................................................................................................AAAGAAATTTATTGAAGCTT........................................................................2011.001000001
.....................................................................................................................AAC-AATTGTACACTGCTTTCGT............................................................................................2211.001100000
.....................................................................................................................................................TATTGAAGCTTTGTATAAT................................................................1911.001100000
.......................................................................................................................................................TTGAAGCTTTGTATAATCT..............................................................1950.201001000
droGri2
CGA--AAAACTAAAAAAAAAAAAAAGT---------G-----AACAACCCA---------A----CCA------------ACAAAACAATAGAAA----------A------AAATAAAC-AATTGTACACGGCTTTCGTAAAGAAATTTATCGAAGCTTTGTATAATTAACCAAAAAAAAACAACCTGATC-TTTGTGTTATTATTTGCTTTAT-----------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.....................................................................................................................AAC-AATTGTACACGGCTTTCGT............................................................................................2212.00211
..................................................A---------A----CCA------------ACAAAACAATAGAAA----------...............................................................................................................................2011.00110
.......................................................................................................................C-AATTGTACACGGCTTTCGTG...........................................................................................2111.00110
......................................................................................................................AC-AATTGTACACGGCTTTCGTA...........................................................................................2211.00110
.......................................................................................................................................................TCGAAGCTTTGTATAATTAACT...........................................................2211.00101
.....................................................................................................................AAC-AATTGTACACGGCTTTCG.............................................................................................2111.00110
.....................AAAAGT---------G-----AACAACCCA---------A----CCA------------........................................................................................................................................................2011.00110

Generated: 10/20/2015 at 10:32 PM