dsi_7483

ACCCCCGAAAAGAATCGCGAGTGCAATTTTGTAAATACGGAGAGGAAAAGGTGCGCAAAATAGCAAAAATAAATGCAACGAAAATAAACGCAGCAAAACAACGGGCAGAAAGATACGAAAAGAAGAGGCAGGCGAAGCAGTGGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGGCGTTAGTGGGAAAGAGAGGGCGCGAGAGGAGACGGAGAGCGAATACGAATGCGTATGGTGTAGTTGTAGTGGT ************************************************..((((......(((........)))..........(((((.((.......((............)).........(((.(((......(((...........)))........))))))...)).)))))...............))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	M024 male body	GSM343915 embryo	SRR553488 RT_0-2 hours eggs
......GAAAAGAATCGCGAGTGC..................................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................CGAATGCGTATGGTGTAGTTGTAGTGGT	28	0	1	1.00	1	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................AATGCGTATGGTGTAGTTGTAG....	22	0	1	1.00	1	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................GGAGAGCGAATACGAATGCGTATGGT..............	26	0	1	1.00	1	1	0	0	0	0	0	0	0
........................AATTTTGTAAATACGGAGAGGAAAAGGT......................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................AACGCAGCAAAACAACGGGCAGA.............................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0
.......................CAATTTTGTAAATACGGA.................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................GCAGAGGGCGCGCGAGGAGAC........................................	21	3	4	0.25	1	0	1	0	0	0	0	0	0
............................................................................................................................................................ATAAAGAAGCCGTCAGAG............................................................................	18	2	4	0.25	1	0	0	0	0	0	1	0	0
................................TAATACGGAAAGGAAAAGATG.....................................................................................................................................................................................................	21	3	4	0.25	1	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................AGGGCGAGAGAGGAGAAGGAG....................................	21	2	6	0.17	1	0	0	0	1	0	0	0	0
....................................................................................................................................................................GCCGCCTTAGCAGCGTTAGA..................................................................	20	3	6	0.17	1	0	0	0	0	0	0	0	1
...................................................................................................................................................................................................................................GCATCTGGTGTAGTGGTA.....	18	3	20	0.15	3	0	0	3	0	0	0	0	0
...................................................................................................................................................................................................................................TCGTATGGTGTAGTGG.......	16	2	20	0.05	1	0	0	1	0	0	0	0	0

TGGGGGCTTTTCTTAGCGCTCACGTTAAAACATTTATGCCTCTCCTTTTCCACGCGTTTTATCGTTTTTATTTACGTTGCTTTTATTTGCGTCGTTTTGTTGCCCGTCTTTCTATGCTTTTCTTCTCCGTCCGCTTCGTCACCTCTTTTCTCTGTGTATTTCTTCGGCGGTATCGCCGCAATCACCCTTTCTCTCCCGCGCTCTCCTCTGCCTCTCGCTTATGCTTACGCATACCACATCAACATCACCA ************************************************..((((......(((........)))..........(((((.((.......((............)).........(((.(((......(((...........)))........))))))...)).)))))...............))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
.........................................................................................................................................................................................................TCTCCTCTGCCTCTCGCT...............................	18	0	1	1.00	1	1	0	0
...................................................................................................................................................................TCGGCGGGATCCCCACAAT....................................................................	19	3	5	0.20	1	0	1	0
.......................................................................................................................TTCTTCTCCGTCTGCCTTGT...............................................................................................................	20	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:17922676-17922925 -	dsi_7483	ACCC-CCGAAA----------------AGAATCGCGA-------GTGCAA-T--------------------------------------------TTTGTAAATAC-GGAG-AGGAAAAGGTGCGCAAAATA--GCAA-AAATAAATGCAACGAAAATAAA-------CGCAGCAAAACAACGGGCAGAAAGATACGAA-AAGAAGAGGCAGGCGA---AGCAGTGGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------CGTTAGTGGGAAAGAGAGGGC--GCGAG------------AGGAGACGGAG----------------------------------AGCGAATACGAA---TGCG------------------------TATG-GTGTAGTTGTAGTGGT
droSec2	scaffold_9:698261-698510 -		ACCC-CCGAAA----------------AGATTCGCGA-------GTGCAA-T--------------------------------------------TTTGTAAATAC-GGAG-AGGAAAAGGTGCGCAAAATA--GCAA-AAATAAATGCAACGAAAATAAA-------CGCAGCAAAACAACGGGCAGAAAGATACGAA-AAGAAGAGGCAGGCGA---AGCAGTGGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------CGTTAGAGGGAAAGAGAGGGC--GCGAG------------AGGAGACGGAG----------------------------------AGCGAATACGAA---TGCG------------------------TATG-GTGTGGTTGTAGTGGT
dm3	chr2R:17368319-17368568 -		ATCC-CCGAAA----------------AGAATCGCGA-------GTGCAA-T--------------------------------------------TTTGTAAATAC-GGAG-AGGAAAAGGTGCGCAAAATA--GCAA-AAATAAATGCAACGAAAATAAA-------CGCAGCAAAACAACGGGCAGAAAGATACGAA-AAGAAGAGGCAGGCGA---AGCAGAGGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------CGTTAGTGGGAAAGAGAGGGC--GCGAG------------AGGAGACGGAG----------------------------------AGCGAATACGAA---TGCG------------------------TATG-GTGTAGTTGTAGTGGT
droEre2	scaffold_4845:11513086-11513328 -		ACCC-CCGAAA----------------AGAATCGCGA-------GTGTAA-T--------------------------------------------TTTGTAAATAC-GGAG-AGAAAAAGGTGCGCAAAATA--GCAA-AAATAAATGCAACGAAAATAAA-------CGCAGCAAAACAACG-GCGGAAAGATACGAA-A---AGAGGCA-GCGA---AGCAGAGGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------CGGTAGTGGGAAAGAGAGGGCGA----G------------AGGAGACGGAG----------------------------------AGCGAATACGAA---TGCG------------------------TATG-GTGTAGTTGTAGTGGT
droYak3	2R:11811653-11811900 +		ACCC-CCGAAA----------------AGAATCGCGA-------GTGAAA-T--------------------------------------------TTTGTAAATAC-GGAG-AGGAAAAGGTGCGCAAAATA--GCAA-AAATAAATGCAACGAAAATAAA-------CGCAGCAAAACAACGGGCAGAAAGATACGCA-AAGAAGAGGCAGGCGA---AGCAGAGGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------CGTTAGTGGGAAAGAGAGGGCGA----G------------AGGAGACGGAG----------------------------------AGCGAATACGAA---TGCG------------------------TATG-GTGTAGTTGTAGTGGT
droEug1	scf7180000409474:566614-566857 +		ACCCCCCAAAA----------------AGAAACGCGA-------GTGCAGTT--------------------------------------------TTTGTAAATAC-AAAA-AGGAAGAGGTGCGTTAAATA--ACAA-AAATAAATGCAACGAAAATAAA-------CGAAGCAAAACAACGGGCAAAAAGATACGAAAAAGAAGAGGCAGGCGA---AGCAGAAGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------CGTGAGTGGGAAAGAGAGGGC-G----G------------AGGAGACAGAG----------------------------------AGCGAATACGAA---------------------------------TA-GTGTGTTGGTAGTGGT
droBia1	scf7180000302143:1021488-1021730 +		ACCC-CCGAAA---------------TAAAGTCGCGA-------GTGCAACT--------------------------------------------TGTGTAAATAC-GGAG-CGG-AGAGGTGCGCAAGGTA--GCGA-AGA-AAATGCAACGAAAATAAA-------CGCAGCAAAACAACGGGCAGAAAGATACGAA-AGGAAGAA------------GCAGAAGCGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------TGCGAGTGCGAAAGAGAGGGCCG----G------------AGGAGACGGAG----------------------------------AGCGAATAGGAATAGTGTG------------------------TGTGTGTGCGGTTGTAGTGGT
droTak1	scf7180000415722:283765-284020 -		ACCC-CCGAAA----------------ATAGTCGCGA-------GTGCAG-A--------------------------------------------TTTGTAAATAC-GAAGGCGGCAAAGGTGCGCAGAGTA--GCAG-CAAGAAATGCAACGAAAATAAA-------CGCAGCAAAACAACGGGCAGAAAGATACGAAAAAGAAGAAGCAGGCGA---AGCAGCAGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------TGTGAGTGGGAAAGAGAGGGC--GCCTG------------AGGAGACAGAG----------------------------------AGCGAATAGGAAGAGTGTG------------------------TGTGTGCGTGGTTGTAGTGGT
droEle1	scf7180000491258:8824-9057 -		AAAT-C-AAAT----------------GAAATCGCGA-------GTGCAAAT--------------------------------------------TTTGTAAATACCTAAA-AAGAAAAGGTGCGCAAAAAAT-GGAA-AAAT-AATGCAACGAAAATAAA-------CACAGCAAAACAACGGGCCGAAAGATACGAA-AAGAAGAAGCAGGCGA---AGCAAAAGAGAAAA-AGACACATAAAGAAGCCGCCA-AGCGG-------CATGAGTGGGAAAGAGAGGGC-A----G------------AGGAGACAGAG----------------------------------AGCGAA---------------------------------------TA-GTGTGGTTGTAGTGGT
droRho1	scf7180000772433:13700-13934 -		ACCA-TCGAAT----------------CAAATCGCGA-------GTGCAA-T--------------------------------------------TTTGTAAATAC-AAAA-AAGAAAAGGTGCGGAGAATA--GTAAAAAATTAATGCAACAAAAATAAA-------CGCAGCAAAACAACGGGCCGAAAGATACGAA-AAGAAGAAGCAGGCGA---AGCAGAAGAGAAAA-AGACATATAAAGAAGCCGCCATAGCGG-------CATGAGTGGGAAAGAGAGGGC-A----G------------AGGAGACAGAG----------------------------------AGCGAA---------------------------------------TA-GTGTGGTTGTAGTGGT
droFic1	scf7180000453201:192900-193135 +		ACCG-CGAAAT----------------AGAGTCGCGA-------GTGCGGTT--------------------------------------------TTTGTAAATAC-AAAT-AAGAAAAGGTGCGCAAAGTA--GTAA-AAATAAATGTAACGAAAATAAA-------CGCAGCAAAACAACGGGCAGAAAGATACGAAAAAGAAGAAGCAGGCGA---AGCAGAAGAGAAAA-AGACACATAAAGAAGCCGCCATAGCGG-------CGTGAGTGGGAAAGAGAGGGG-A----G------------AGGAGACAGAG----------------------------------AGCGAA---------------------------------------TA-GTGTGGTTGTAGTGGT
droKik1	scf7180000302411:633695-633928 -		AAAA-C------------------------AACGTGT-------GTGCAA----------------------------------------------TTTGTAAATAC-AAA----TAAAAGGTGCGCAAAATT--GCCA-AAATAAAT------AAAGAAAA-------CGCAGCAAAACAACGGGCTGG------CGTAGGAGAAGAAGTA---GA---AG---CGGAGAAAA-AGGCACATAAAGAAGCCGCAATAGCCG-------CATGTGTGCGAGAGAGAAAGA---------------------GAGACAGAGA-CGGAGCGAGAGCGAGTTTGGACAGAGTGGGAGAG---------------CG------------------------TATA-GTGTGGTTGTAGTGGT
droAna3	scaffold_13266:5197565-5197847 -		GTTT-CCACACGCAGCGGTGCGTCGGGAAATTCGCGGCGCCGATGTGAA------------------------------------------TAAATATTATACAAAT----A-TATCAAAGGTGTGAAAAAAT--ACAA-AATTAAACGAAAAAAAAATAAATAAAAATCGCAGAAAAACAACGCGAAGAAGAAGAGGCAGAAGCAGCAGCAGGCGAAGAAGCAGAAGAGAAAA-AGGCACATAAAGAAGCCGCCATAGCCG-------CATGTGTGCGACGGAGACGGA--GACG--GTGTGGGAAGGGGGAGACAGAA--------------------------------AGAGCGAA---------------------------------------TA-GTGTGGTGGTAGTGGT
droBip1	scf7180000395751:986854-987115 -		GTTT-CCACACGCAGCGGTGCGTCGGGAAATTCGCGGCGCCGAAGTGAA------------------------------------------TAAATTTTA----TAC-AAAA-TATTAAAGGTGTGCAATATA---CAA-AAATTAA--CAA-AAAAAAAAC-------CGCAGCAAAACAACGCGAAGAG------GAAGAGGCAGCAGCAGGCGA---AGCATAAGAGAAAA-AGGCACATAAAGAAGCCGCCATAGCCG-------CATGTGTGCGACGGAGACGGA-CGA--GAGTGTGGGACA-GGGAGACAGCG--------------------------------AGAGCGA---------------------------------------ATA-GTGTGGTGGTAGTGGT
dp5	3:15648590-15648799 -		T----------------------------------------------------------------------------------------------------AAAAAC-GGTC-AGCCAAAAATATGCCAATC------------AAATAAATAAAATATAAC-------CAAAGCCAAACAACGCGAAGAG---------------------------------------G-AAGAGGCACATAAAGAAGCCGCCGTGCCTGTAGTTAGCCTGTGCCAGAGCGAGAGGGGGT----G------------ACGTGACAGAGAGAGGAG---------------------------AGCGCGCCCGTG---TGCGCTGTGTGTCTGCTTTTGTGGATGGTGTA-GTGTGGATGTAGTGGT
droPer2	scaffold_4:3401518-3401809 +		AATT-TATAGC----------------CGAAACGCGT--------TGTAA-TTTTGCGTGGAGAATCTGTGGAAATGCGCCCGGCGTGTTCTGTGC----AATATATTTAAT-TAAAAACGGTCAGCCAAAAATATACC-AATCAAATAAATAAAATATAAC-------CAAAGCCAAACAACGCGAAGAG---------------------------------------G-AAGAGGCACATAAAGAAGCCGCCGTGCCTGTAGTTAGCCTGTGCCAGAGCGAGAGGGGGT----G------------ACGTGACAGAGAGAGGAG---------------------------AGCGCGCCCGTG---TGCGCTGTGTGTCTGGTTTTGTGGATGGTGTA-GTGTGGATGTAGTGGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ACCC-CCGAAA----------------AGAATCGCGA-------GTGCAA-T--------------------------------------------TTTGTAAATAC-GGAG-AGGAAAAGGTGCGCAAAATA--GCAA-AAATAAATGCAACGAAAATAAA-------CGCAGCAAAACAACGGGCAGAAAGATACGAA-AAGAAGAGGCAGGCGA---AGCAGTGGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------CGTTAGTGGGAAAGAGAGGGC--GCGAG------------AGGAGACGGAG----------------------------------AGCGAATACGAA---TGCG------------------------TATG-GTGTAGTTGTAGTGGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......GAAA----------------AGAATCGCGA-------GTGC..................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CGAA---TGCG------------------------TATG-GTGTAGTTGTAGTGGT	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................AA---TGCG------------------------TATG-GTGTAGTTGTAG....	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GGAG----------------------------------AGCGAATACGAA---TGCG------------------------TATG-GT..............	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AA-T--------------------------------------------TTTGTAAATAC-GGAG-AGGAAAAGGT.......................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AA-------CGCAGCAAAACAACGGGCAGA....................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................CAA-T--------------------------------------------TTTGTAAATAC-GGA...................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

ACCC-CCGAAA----------------AGATTCGCGA-------GTGCAA-T--------------------------------------------TTTGTAAATAC-GGAG-AGGAAAAGGTGCGCAAAATA--GCAA-AAATAAATGCAACGAAAATAAA-------CGCAGCAAAACAACGGGCAGAAAGATACGAA-AAGAAGAGGCAGGCGA---AGCAGTGGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------CGTTAGAGGGAAAGAGAGGGC--GCGAG------------AGGAGACGGAG----------------------------------AGCGAATACGAA---TGCG------------------------TATG-GTGTGGTTGTAGTGGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......GAAA----------------AGATTCGCGA-------GTGCAA-T--------------------------------------------T.................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0
..................................................................................................................................................................................................................................................................................................................................................................................GCG------------------------TATG-GTGTGGTTGTAGT...	20	1	1.00	1	1	0	0	0
...............................................CAA-T--------------------------------------------TTTGTAAATAC-GGAG-AGGA.............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
....................................A-------GTGCAA-T--------------------------------------------TTTGTAAATAC-GGAG-.................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
..................................................................................................TGTAAATAC-GGAG-AGGAAAAGC........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
................................................AA-T--------------------------------------------TTTGTAAATAC-GGAG-A................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.......................................................................................................ATAC-GGAG-AGGAAAAGGTGCGCAAA................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................AGCGG-------CGTTAGAGGGAAAGAGA....................................................................................................................................	22	1	1.00	1	0	0	0	1

dm3

ATCC-CCGAAA----------------AGAATCGCGA-------GTGCAA-T--------------------------------------------TTTGTAAATAC-GGAG-AGGAAAAGGTGCGCAAAATA--GCAA-AAATAAATGCAACGAAAATAAA-------CGCAGCAAAACAACGGGCAGAAAGATACGAA-AAGAAGAGGCAGGCGA---AGCAGAGGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------CGTTAGTGGGAAAGAGAGGGC--GCGAG------------AGGAGACGGAG----------------------------------AGCGAATACGAA---TGCG------------------------TATG-GTGTAGTTGTAGTGGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
ATCC-CCGAAA----------------AGAATCGCGA-------GTGC..................................................................................................................................................................................................................................................................................................................................................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CGGAG----------------------------------AGCGAATACGAA---TGCG------------------------TATG-G...............	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AAGAGGCAGGCGA---AGCAGAGG..............................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................GCGAATACGAA---TGCG------------------------TATG-GTGTAG..........	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GTTAGTGGGAAAGAGAGGGC--G.............................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ATCGCGA-------GTGCAA-T--------------------------------------------TTTGTAA...........................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................AGCCGCCATAGCGG-------CGTTAGTGGGA..........................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TCGCGA-------GTGCAA-T--------------------------------------------TTTGTAAATAC-GG....................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................................................................................................................................................................................GCGG-------CGTTAGTGGGAAAT.......................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................................................................................................................CGG-------CGTTAGTGGGAAAGAGA....................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GAA---TGCG------------------------TATG-GTGTAGTT........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TACGAA---TGCG------------------------TATG-GTGT............	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ATACGAA---TGCG------------------------TATG-GTGTAG..........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ATCGCGA-------GTGCAA-T--------------------------------------------TTTGTAAATAC-GG....................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GTTAGTGGGAAAGAGAGGG.................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................ACGAA---TGCG------------------------TATG-GTGTAGTT........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................AG------------AGGAGACGGAG----------------------------------AGCGAA..........................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................AATAC-GGAG-AGGAAAAGC........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GA-------GTGCAA-T--------------------------------------------TTTGTAAATAC-G.....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AAGCCGCCATAGCGG-------CGTTAGTGGG...........................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................AAAAGAGACACATAAAGAAGCC......................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................GAG----------------------------------AGCGAATACGAA---TGCG------------------------TATG-................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ACCC-CCGAAA----------------AGAATCGCGA-------GTGTAA-T--------------------------------------------TTTGTAAATAC-GGAG-AGAAAAAGGTGCGCAAAATA--GCAA-AAATAAATGCAACGAAAATAAA-------CGCAGCAAAACAACG-GCGGAAAGATACGAA-A---AGAGGCA-GCGA---AGCAGAGGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------CGGTAGTGGGAAAGAGAGGGCGA----G------------AGGAGACGGAG----------------------------------AGCGAATACGAA---TGCG------------------------TATG-GTGTAGTTGTAGTGGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................GTAA-T--------------------------------------------TTTGTAAATAC-GGAG-AGA..............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................G-------CGGTAGTGGGAAAGAGAG...................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GGTAGTGGGAAAGAGAGGGCGA----G------------A............................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.................................................A-T--------------------------------------------TTTGTAAATAC-GGAG-A................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................GAGGGCGA----G------------AGGAGACGGAG----------------------------------AGC.............................................................	23	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AAAGAGACACATAAAGAAGCCGC....................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................TATG-GTGTAGTTGTAGTGG.	19	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................G------------------------TATG-GTGTAGTTGTAGT...	18	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................GGCGA----G------------AGGAGACGGAG----------------------------------AGC.............................................................	20	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CGAA---TGCG------------------------TATG-GTGTAGTTGT......	22	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................TACGAA---TGCG------------------------TATG-GTGTAGTTGTAGT...	27	1	1.00	1	0	0	0	1	0	0	0
............................................GTGTAA-T--------------------------------------------TTTGTAAATAC-GGAG-AGAAA............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.........AA----------------AGAATCGCGA-------GTGTAA-T--------------------------------------------T.................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0

droYak3

ACCC-CCGAAA----------------AGAATCGCGA-------GTGAAA-T--------------------------------------------TTTGTAAATAC-GGAG-AGGAAAAGGTGCGCAAAATA--GCAA-AAATAAATGCAACGAAAATAAA-------CGCAGCAAAACAACGGGCAGAAAGATACGCA-AAGAAGAGGCAGGCGA---AGCAGAGGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------CGTTAGTGGGAAAGAGAGGGCGA----G------------AGGAGACGGAG----------------------------------AGCGAATACGAA---TGCG------------------------TATG-GTGTAGTTGTAGTGGT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................A-T--------------------------------------------TTTGTAAATAC-GGAG-AGGAAAA..........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................AAAGAGACACATAAAGAAGCCGCCATAGC..............................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................AAAGAGAGGGCGA----G------------AGGAGACGGAG----------------------------------AGC.............................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................AAATAC-GGAG-AGGAAAAGGTGCGC...................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................GAAGAGGCAGGCGA---AGCAGAGGAGA...........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................AAATAC-GGAG-AGGAAAAGT........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................AAAGAGACACATAAAGAAGCCG.....................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

ACCCCCCAAAA----------------AGAAACGCGA-------GTGCAGTT--------------------------------------------TTTGTAAATAC-AAAA-AGGAAGAGGTGCGTTAAATA--ACAA-AAATAAATGCAACGAAAATAAA-------CGAAGCAAAACAACGGGCAAAAAGATACGAAAAAGAAGAGGCAGGCGA---AGCAGAAGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------CGTGAGTGGGAAAGAGAGGGC-G----G------------AGGAGACAGAG----------------------------------AGCGAATACGAA---------------------------------TA-GTGTGTTGGTAGTGGT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACCC-CCGAAA---------------TAAAGTCGCGA-------GTGCAACT--------------------------------------------TGTGTAAATAC-GGAG-CGG-AGAGGTGCGCAAGGTA--GCGA-AGA-AAATGCAACGAAAATAAA-------CGCAGCAAAACAACGGGCAGAAAGATACGAA-AGGAAGAA------------GCAGAAGCGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------TGCGAGTGCGAAAGAGAGGGCCG----G------------AGGAGACGGAG----------------------------------AGCGAATAGGAATAGTGTG------------------------TGTGTGTGCGGTTGTAGTGGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACCC-CCGAAA----------------ATAGTCGCGA-------GTGCAG-A--------------------------------------------TTTGTAAATAC-GAAGGCGGCAAAGGTGCGCAGAGTA--GCAG-CAAGAAATGCAACGAAAATAAA-------CGCAGCAAAACAACGGGCAGAAAGATACGAAAAAGAAGAAGCAGGCGA---AGCAGCAGAGAAAAGAGACACATAAAGAAGCCGCCATAGCGG-------TGTGAGTGGGAAAGAGAGGGC--GCCTG------------AGGAGACAGAG----------------------------------AGCGAATAGGAAGAGTGTG------------------------TGTGTGCGTGGTTGTAGTGGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAAT-C-AAAT----------------GAAATCGCGA-------GTGCAAAT--------------------------------------------TTTGTAAATACCTAAA-AAGAAAAGGTGCGCAAAAAAT-GGAA-AAAT-AATGCAACGAAAATAAA-------CACAGCAAAACAACGGGCCGAAAGATACGAA-AAGAAGAAGCAGGCGA---AGCAAAAGAGAAAA-AGACACATAAAGAAGCCGCCA-AGCGG-------CATGAGTGGGAAAGAGAGGGC-A----G------------AGGAGACAGAG----------------------------------AGCGAA---------------------------------------TA-GTGTGGTTGTAGTGGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACCA-TCGAAT----------------CAAATCGCGA-------GTGCAA-T--------------------------------------------TTTGTAAATAC-AAAA-AAGAAAAGGTGCGGAGAATA--GTAAAAAATTAATGCAACAAAAATAAA-------CGCAGCAAAACAACGGGCCGAAAGATACGAA-AAGAAGAAGCAGGCGA---AGCAGAAGAGAAAA-AGACATATAAAGAAGCCGCCATAGCGG-------CATGAGTGGGAAAGAGAGGGC-A----G------------AGGAGACAGAG----------------------------------AGCGAA---------------------------------------TA-GTGTGGTTGTAGTGGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACCG-CGAAAT----------------AGAGTCGCGA-------GTGCGGTT--------------------------------------------TTTGTAAATAC-AAAT-AAGAAAAGGTGCGCAAAGTA--GTAA-AAATAAATGTAACGAAAATAAA-------CGCAGCAAAACAACGGGCAGAAAGATACGAAAAAGAAGAAGCAGGCGA---AGCAGAAGAGAAAA-AGACACATAAAGAAGCCGCCATAGCGG-------CGTGAGTGGGAAAGAGAGGGG-A----G------------AGGAGACAGAG----------------------------------AGCGAA---------------------------------------TA-GTGTGGTTGTAGTGGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAA-C------------------------AACGTGT-------GTGCAA----------------------------------------------TTTGTAAATAC-AAA----TAAAAGGTGCGCAAAATT--GCCA-AAATAAAT------AAAGAAAA-------CGCAGCAAAACAACGGGCTGG------CGTAGGAGAAGAAGTA---GA---AG---CGGAGAAAA-AGGCACATAAAGAAGCCGCAATAGCCG-------CATGTGTGCGAGAGAGAAAGA---------------------GAGACAGAGA-CGGAGCGAGAGCGAGTTTGGACAGAGTGGGAGAG---------------CG------------------------TATA-GTGTGGTTGTAGTGGT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GTTT-CCACACGCAGCGGTGCGTCGGGAAATTCGCGGCGCCGATGTGAA------------------------------------------TAAATATTATACAAAT----A-TATCAAAGGTGTGAAAAAAT--ACAA-AATTAAACGAAAAAAAAATAAATAAAAATCGCAGAAAAACAACGCGAAGAAGAAGAGGCAGAAGCAGCAGCAGGCGAAGAAGCAGAAGAGAAAA-AGGCACATAAAGAAGCCGCCATAGCCG-------CATGTGTGCGACGGAGACGGA--GACG--GTGTGGGAAGGGGGAGACAGAA--------------------------------AGAGCGAA---------------------------------------TA-GTGTGGTGGTAGTGGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................................................................................GCGACGGAGACGGA--GACG--GTGTGGGA................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
....................CGTCGGGAAATTCGCGGCGCCGAT......................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................AGCCG-------CATGTGTGCGACGGAGACGGA--GAC...........................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................ACGGA--GACG--GTGTGGGAAGGGGGA.........................................................................................................	24	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................GA--GACG--GTGTGGGAAGGGGGA.........................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................GAA--------------------------------AGAGCGAA---------------------------------------TA-GTGTGGTGGTAG....	25	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................GCGAA---------------------------------------TA-GTGTGGTGGTAGTGGT	23	1	1.00	1	0	1	0	0	0	0
....................CGTCGGGAAATTCGCGGCGCC.........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droBip1

GTTT-CCACACGCAGCGGTGCGTCGGGAAATTCGCGGCGCCGAAGTGAA------------------------------------------TAAATTTTA----TAC-AAAA-TATTAAAGGTGTGCAATATA---CAA-AAATTAA--CAA-AAAAAAAAC-------CGCAGCAAAACAACGCGAAGAG------GAAGAGGCAGCAGCAGGCGA---AGCATAAGAGAAAA-AGGCACATAAAGAAGCCGCCATAGCCG-------CATGTGTGCGACGGAGACGGA-CGA--GAGTGTGGGACA-GGGAGACAGCG--------------------------------AGAGCGA---------------------------------------ATA-GTGTGGTGGTAGTGGT	Size	Hit Count	Total Norm	Total
No Reads

dp5

T----------------------------------------------------------------------------------------------------AAAAAC-GGTC-AGCCAAAAATATGCCAATC------------AAATAAATAAAATATAAC-------CAAAGCCAAACAACGCGAAGAG---------------------------------------G-AAGAGGCACATAAAGAAGCCGCCGTGCCTGTAGTTAGCCTGTGCCAGAGCGAGAGGGGGT----G------------ACGTGACAGAGAGAGGAG---------------------------AGCGCGCCCGTG---TGCGCTGTGTGTCTGCTTTTGTGGATGGTGTA-GTGTGGATGTAGTGGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................GTA-GTGTGGATGTAGTGGT	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................ACAGAGAGAGGAG---------------------------AGCGCGC.........................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................CATAAAGAAGCCGCCGTGC...............................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................ATAAC-------CAAAGCCAAACAACGC.........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTAGCCTGTGCCAGAGCGAGAGGG.................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GTGTCTGCTTTTGTGGATGGTGT..................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................TGTA-GTGTGGATGTAGTG..	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGTA-GTGTGGATGTAGT...	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................CACATAAAGAAGCCGCCGTGC...............................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................GGTGTA-GTGTGGATGTAGT...	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................AAGCCAAACAACGCGAAGAG---------------------------------------G-AAGAG.....................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................AAC-------CAAAGCCAAACAACGC.........................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

AATT-TATAGC----------------CGAAACGCGT--------TGTAA-TTTTGCGTGGAGAATCTGTGGAAATGCGCCCGGCGTGTTCTGTGC----AATATATTTAAT-TAAAAACGGTCAGCCAAAAATATACC-AATCAAATAAATAAAATATAAC-------CAAAGCCAAACAACGCGAAGAG---------------------------------------G-AAGAGGCACATAAAGAAGCCGCCGTGCCTGTAGTTAGCCTGTGCCAGAGCGAGAGGGGGT----G------------ACGTGACAGAGAGAGGAG---------------------------AGCGCGCCCGTG---TGCGCTGTGTGTCTGGTTTTGTGGATGGTGTA-GTGTGGATGTAGTGGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................GTCTGGTTTTGTGGATGGT....................	19	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCTGGTTTTGTGGATGGT....................	23	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................GAGGAG---------------------------AGCGCGCCCGTG---TGCGCT...........................................	24	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................GCCAGAGCGAGAGGGGGT----G------------ACGTGA.......................................................................................................	25	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................AGCCAAACAACGCGAAGAG---------------------------------------G-..........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TCTGGTTTTGTGGATGGTGTA-................	21	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................TGTCTGGTTTTGTGGATGGT....................	20	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGTA-GTGTGGATGTAG....	20	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................G---TGCGCTGTGTGTCTGGC................................	18	2	0.50	1	1	0	0	0	0	0

dsi_7483

2r:17922726-17922875 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-21.9	-21.7	-21.7