dsi_7463

exon [3l_19913196_19913343_+]; CDS [3l_19913196_19913343_+]; intron [3l_19913344_19914423_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TAAGTCCCAGGAAGGAAGTCAGTTCGTGCGAGGTTTCGGCGGAATCGGCGGTAAGTTTGAGCGGCCAAACAGCAAGGCTGGCTAGTTGTAGATTGGTTATTGTACTAAACAAATGCTGCAACTATATCCATTCCTCTTCCCTCATGCTGCTTTCACACGGTCGTCAACGCTATAATGTAAATGTTAATTTGCGAACTGGTACCTCAATTCGATATGTAGGCATTTTGCGCTATAAAGTAGATTTCCAATC ************************************************...(((((((.((((((((((((((((.(((.((((((((((((.(((.........))).))).)))))))))...)))..))).........))))).))).....))))))))).)))....(((((((....))))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M024 male body	M053 female body	O001 Testis	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	SRR902009 testis	GSM343915 embryo
..........................TGCGAGGTTTCGGCGGAATCGGCGGT......................................................................................................................................................................................................	26	0	1	3.00	3	0	0	0	0	0	1	0	0	1	1	0
.....CCCAGGAAGGAAGTCAGTTCGTG..............................................................................................................................................................................................................................	23	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.....................GTTCGTGCGAGGTTTCGGC..................................................................................................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
...................CAGTTCGTGCGAGGTTTCGGC..................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..............................AGGTTTCGGCGGAATCGGCGGT......................................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................CGTGCGAGGTTTCGGCGGAATCGGC.........................................................................................................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
...................CAGTTCGTGCGAGGTTTC.....................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..............GAAGTCAGTTCGTGCGAGGTT.......................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................TCGTGCGAGGTTTCGGCGGAATCGGC.........................................................................................................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............GGAAGTCAGTTCGTGCGAGGTT.......................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................AGGTTTCGGCGGAATCGGC.........................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....TCCCAGGAAGGAAGTCAGTTCGTGCGAGGT........................................................................................................................................................................................................................	30	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0
.........................GTGCGAGGTTTCGGCGGAAT.............................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TTTGCGCTATAAAGGA...........	16	1	11	0.18	2	0	0	0	2	0	0	0	0	0	0	0
............................................................................................TTGGTTGTTGTACTGAGCAAA.........................................................................................................................................	21	3	6	0.17	1	0	0	0	0	1	0	0	0	0	0	0
.....................................................AATTTGAGCGGCAAAACAGCT................................................................................................................................................................................	21	3	8	0.13	1	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TTTGCGCTATAAAGG............	15	1	14	0.07	1	0	0	0	1	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:19913294-19913543 +	dsi_7463	TAAGTCCCAGGAAGGAAGTCAGTTCGTGCGAGGTTTCGGCGGAATCGGCGGTAAGTTTG-AGCGGC------C----------------A---------------A------------------------ACAGCAAGG----CT-GGC--TAGTT-GTAGATTGGT--TATTGTACTAA--------------------------------------------------------ACAAATGCTGCAACT--ATATCCAT-TCCTCTT---CCCTCATGCTGCTTTC---ACAC-------------------------GG-TC-----GTC--AACGCTA-TA----------------------------------------------------------------ATGTAAATGTT-------------------------------AATTTGCGAACTGG----TAC-----CTCAAT-TCGATATG-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC
droSec2	scaffold_11:238512-238760 +		TAAGTCCCAGGAAGGAAGTCAGTTCGTGCGAGGTTTCGGCGGAATCGGCGGTAAGTTTG-AGCGGC------C----------------A---------------G------------------------ACAGCATGG----CT-GGC--TAGTT-GTAGATTGGA--A-TTGTACTAA--------------------------------------------------------ACAAATGCTGCAACT--ATATCCAT-TCCTCTT---CCCTCATGCTGCTTTC---ACAC-------------------------GG-TC-----GTC--AATGCTA-TA----------------------------------------------------------------ATGTAAATGTT-------------------------------AATTTTCGAACTGG----TAC-----CTCAAT-TCGATATG-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC
dm3	chr3L:20344781-20345029 +		TAAGTCCCAGGAAGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTTTG-AGCGGC------C----------------A---------------A------------------------ACAGCACGG----CT-GGC--TAGTT-GTAGATTGGT--T-ATGTACTAA--------------------------------------------------------ACAAATGCTGCAACT--ATATCCAT-TCCTCTT---CCCTCATGCTGCTTTC---ACAC-------------------------GG-TC-----GTC--AACGCTA-TA----------------------------------------------------------------ATGTAAATGTT-------------------------------AATTTGCAAACTGG----TAC-----CTCAAT-TCGATATG-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC
droEre2	scaffold_4784:20044439-20044700 +		TAAGTCCCAGGAGGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTTTC-GAAGCT------C----------------A---------------ACCA---------TCTCCATAGC--ACAGAATGG----CT-GGC--TAGTT-GTAGATTGAT--A-TTGTACTAA--------------------------------------------------------ACAAATGTTGCAACT--ATATCGAT-TCCTCTT---CCCTCATGCTGCTTTC---ACAC-------------------------GG-TC-----ATC--AACGCTA-TA----------------------------------------------------------------ATGTAAATGTT-------------------------------GAATTGCAAATTGG----TAT-----CTCAAT-TCGAAATG-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC
droYak3	3L:20223298-20223559 -		TAAGTCCCAGGAGGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTTTT-AGCACT------C----------------A---------------ACCA---------TTTTTATACC--ACAGAATGG----CT-GGC--TAGTT-GTAAATTGAT--A-TCGTACTAA--------------------------------------------------------ACAAATGCTGCAATT--ATATCCAT-TCCTCTT---CCCTCATGCTGCTTTC---ACAC-------------------------GG-TC-----GTC--AACGCTA-TA----------------------------------------------------------------ATGTAAATGTC-------------------------------TAATTCTAAATTGG----TAT-----TTCAAT-TCGATATG-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC
droEug1	scf7180000409711:5637607-5637875 -		CAAGTCCCAGGAGGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTTAG-A-CAGCC-----A----------------A---------------ATCTTAG---------TTATCCC--TCAGATTAGCTGGCT-AGC--TAGTA-GTAGATTTAT--A-TTGTTCAAAGAC-----------------------------------------------------AAAAATGTTGCAACT--ATTTCCAT-TCCTCTTT--CCCTCATGCTGCTTTC---ACAT-------------------------GG-TC-----GTC--AACGCTT-TA----------------------------------------------------------------ATGTAAAT-TA-------------------------------ATCTTTAAAATTGG----TAC-----CACAAT-TCGATATG-----TAGGCATATTGCGCTATAAAGTAGATTTTCAGTC
droBia1	scf7180000302193:5715086-5715337 -		CAAGTCTCAGGAGGGAAGTCAGTTCGTGCGAGGTTTCGGCGGAATCGGCGGTAAGTTTTC-AAGT-TG---------------------A----------------------------------ACCC--CAAGATTAG----CT-GGC--TAGCG-GTAGATCGAT--A-TTGTTCCAA--------------------------------------------------------ACAAATGCTGCAACT--ATTTCTAT-TCCTCTT---TCCTCATGCTGCTTTTC--ACAC-------------------------GG-TC-----GTC--AACGCTA-TG----------------------------------------------------------------TTGTAAATGTA-------------------------------TACCTAAAAATTGT----GAC-----CTCT-T-CCGATACG-----TAGGCATATTGCGCTATAAAGTAGATTTCCAATC
droTak1	scf7180000415703:461862-462142 -		CAAGTCCCAGGAGGGAAGTCAGTTCGTGCGAGGTTTCGGCGGAATCGGCGGTAAGTTTC-AAAGT-CAAAAG-TGGAT-----------TCTA--------------------------------CCC--ACAGATTAC----CT-GGC--TAGCC-GTAGATCGAT--A-TTATTGCAA--------------------------------------------------------ACAAGTGCTGCAACT--ATTTCTAT-TCCTCTT---CCCTCATGCTGCTTTCCACACAC-------------------------GG-TC-----GTC--AACGCTA-TA-------------------------------TTTA-----------------------------TTGTAAATGTT------------------------TACTGTAAACTTTGAAATCGGAACCTAC-----CTTAAT-TCGATATG-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC
droEle1	scf7180000491193:4665151-4665412 +		CAAGTCTCAGGAGGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTGTTC-AAGG-C----------------------AT-------------------TG----TCTTTCGATCCT--TTGGATTAG----CT-AGC--TAGTG-GTAGCTCCAA--A-TATATATAT--------------------------------------------------------ACAAATGCTGCAACA--ATTTCCAT-TCCTCTT---CCCTCATGCTGCTTTC---ACAC-------------------------GG-TC-----GTC--AATGCTA-TA----------------------------------------------------------------ATGTAAATGTA-------------------------------AACTTTTAAATTGT----TAC-----CTCGAT-TTGATGTT-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC
droRho1	scf7180000777002:77294-77557 +		CAAGTCCCAGGAGGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTGTTC-AAGA-C----------------------AT-------------------TG----TCTTCATACCCC--ACAGATTAG----CT-GGC--TAGCG-GTAGCTCGAAATA-TTTTTCTAA--------------------------------------------------------ACAAATGCTGCAACT--ATTTCCAT-TCCTCTT---CCCTCATGCTGCTTTC---ACAC-------------------------GG-TC-----GTC--AACGCTA-TA----------------------------------------------------------------ATGTAAACTTA-------------------------------AACCTTAAACTTGA----TAC-----CTCGAT-TTTATGTG-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC
droFic1	scf7180000454113:1981373-1981635 -		TAAGTCCCAGGAAGGAAGTCAGTTCGTGCGAGGTTTCGGAGGAATCGGCGGTAAGTTCAC-AAAG-CA---------------------A---------------A----------TCTGTGTGTCCA--ACTGATTAG----CTAGGC--TAGTTGGTAGCTCGAT--A-TTATTCTAA--------------------------------------------------------ACAAATGCTGCAACT--ATTTCCAT-TCCTCTT---TCCTCATGCTGCTTTT---ACAC-------------------------GG-TC-----GTC--AATGCTG-TA----------------------------------------------------------------ATGTAAATGTA-------------------------------ATCTTGAAAATCGC----TAC-----CACATT-TGGATGTG-----TAGGCATATTGCGCTATAAAGTAGATTTCCAATC
droKik1	scf7180000302441:3066354-3066604 +		CAAGTCGCAGGAGGGAAGTCAGTTTGTGCGAGGTTTCGGTGGAATAGGCGGTAAGTGTTTAGC--C------C----------------A---------------GTC--------TCTGAATTC-TCTTACTGCTGGC----CC-GGC--TAGTA-GAGGCTCGAT--A-TTGTTCTAT-AT-----------------------------------------------------AAAAATGCTGCAACT--ATTTCCAT-TCCTCTT---CCCTCATGCTGCTTTA---ACAC-------------------------GG-TC-----GCC----CGCTA-TG------------------------------ATGTA-----------------------------TTGTAAATGTA-------------------------------AAT--------TAA----TAT-----C----------TGTG-----TAGGCATTTTACGCTATAAAGTAGATTTCCAATC
droAna3	scaffold_13337:10709820-10710071 +	dan_2553	CAAGTCCCAGGAGGGTAGCCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTACA--G-----------TGGATAT------ATC--CA-------------------------------TCCA--CTAAATTAT----C--ATC--CAGCA-GTAGAAGTAG--A-TGATTTAA-----------------------------------AACGCTA--TAATTGT-GATATACAAACTTTGTATCTCTATCTCCAT-TCCTTTTCC-CCTTAATGCTGCTTTCC--ACAC-------------------------GA-TC-----GTCACAACGCTA-TA----------------------------------------------------------------ATGTAA----------------------------------------------------------------------TAATGTG-----TAGGCATATTGCGCTATAAAGTAGATTTCCAATC
droBip1	scf7180000396569:665913-666123 -		CAAGTCCCAGGAGGGTAGCCAGTTTGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTACTG-------------TGGAC-----------ATCA-------------------------------TCCA--CTTGATTAA----CC--------------------------------------------------------TGTAGATGTAGCTGTAGTCA--------AC----TATGATGGCT--AA----ATATCTGTCTCCTTTAT--CCCTAATGCTGCTTTCC--GTAC-------------------------GA-TC-----GACACAACGCTA-TA----------------------------------------------------------------AT--------------------------------------------------------------------------------G-----TAGGCATATTGCGCTATAAAGTAGATTTCCAGTC
dp5	XR_group6:2179319-2179632 +		TAAATCGCAGGAAGGAAGTCAGTTTGTGCGTGGCTTCGGTGGCATTGGCGGTAAGTCC---------------CAGACAA------ATT--CAGTTCCAGACTAGACTATCGTTAGCCGTCACACTGG--ACTGA--AG----CT-AGCTTTAGTT-GTAGTTCGAT--T-TCG----------------------------------------ATTGTAAGCTAATCAAT----TCCAAAAGTTGAAACTGTTTTTCCAT-TCCTCTT---CCCTCATGCTGCTTTA---ACACG--------AATGCAACACACGAATGG-TC-----GTC--GTGGCTT-TG------------------------------ATATTAAA----CATTTGTA-------------AATGTAAATGTA-------------------------------AA-----------------------------------TGTGTCGAATAGGTATTTTGCGCTACAAAGTAGATTTTCAATC
droPer2	scaffold_9:471608-471921 +		TAAATCGCAGGAGGGAAGTCAGTTTGTGCGTGGCTTCGGTGGCATTGGCGGTAAGTCC---------------CAGACAA------ATA--CAGTTCCAGACTAGACTATCGTTAGCCGTCACACTGG--ACTGG--AG----CT-AGCTTTAGTT-GTAGTTCGAT--T-TCG----------------------------------------ATTGTAAGCTAATCAAT----TCCAAAAGTTGAAACTGTTTTTCCAT-TCCTCTT---CCCTCATGCTGCTTTA---ACACG--------AATGCAACACACGAATGG-TC-----GTC--GTGGCTT-TG------------------------------ATATTAAA----CATTTGTA-------------AATGTAAATGTA-------------------------------AA-----------------------------------TGTGTCGAATAGGTATTTTGCGCTACAAAGTAGATTTTCAATC
droWil2	scf2_1100000004511:3021501-3021557 -		TAAATCTCAGGAGGGTAGCCAGTTTGTGCGAGGATTCGGTGGGATTGGTGGTAAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13049:19018049-19018376 -	dvi_20570	CAAATCTCAGGAGGGCAGTCAGTTTGTGCGAGGTTTCGGTGGCATTGGCGGTAAGTGG---------------TTGACAA------A-------------------------------------------AGCGCC--T------------------------CTAT--A-TTGATATAT-ATAC---------ACATATTTGAATACAGTACGAGTGTAAGCTAAAAAAT----TAATTACGTATCTACT--GTTTCGAT-TCCTCTT---CCTTCATGCTGCTTTA---AAACATAACTCTAAATGTAACT------TAATTCAACTTGAC--GTCGCTCCTTGTCCATAACCATCA-ACTATACTTGTTTTAAT---ATATGAACATATATATTATTTATTTAAAATT----ATA------------------------------------------------------------------TATATGTG-----TAGGCATTTTGCGCTATAAAGTAGATTTTCAATC
droMoj3	scaffold_6680:12215827-12216191 +		CAAATCTCAGGAGGGCAGCCAGTTTGTGCGAGGTTTCGGTGGCATTGGCGGTAAGTAG---------------TTGAC-----------A---------------A------------------------ACAGCC--T----CT-GGT--T-------------------------TAT-ATA----TTTTTTAAATATCTGTATATAGTGCGAGTGTAAGCTAAACAAT----TAATTACGTATCTATT--GTTTCCAC-TCCTCTT---CCTTCATGCTGCTTTT---AAACATAACTCTAAATGTAACT------TGG-TCAACTTGAC--GACGCTC-TTGTGCATAACCATCAAACTTTACTTGTTTTAAT---ATA----CATATATA-------------TATATATATATATATATATACTTATATTTATGTATA-------T-------ATTTGTTATTTAAATTAATTCAATCTATATATA-----TAGGCATATTGCGCTATAAAGTAGACTTTCAATC
droGri2	scaffold_15110:16708116-16708298 -		CAAATCTCAGGAGGGCAGTCAGTTTGTGCGAGGTTTCGGTGGCATTGGCGGTAAGTCG---------------GTAACAATTATCAA-------------------------------------------ACTACC--T----TA--------------------------------TAT-ATATTTATATCTGAACAATCTGTATATAGTGCGAGTGTAAGCTACAAAAT----TAATTACGTATCTACT--GTTTCCAT-TCCTTTTCCTCCTTCATGCTGCTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TAAGTCCCAGGAAGGAAGTCAGTTCGTGCGAGGTTTCGGCGGAATCGGCGGTAAGTTTG-AGCGGC------C----------------A---------------A------------------------ACAGCAAGG----CT-GGC--TAGTT-GTAGATTGGT--TATTGTACTAA--------------------------------------------------------ACAAATGCTGCAACT--ATATCCAT-TCCTCTT---CCCTCATGCTGCTTTC---ACAC-------------------------GG-TC-----GTC--AACGCTA-TA----------------------------------------------------------------ATGTAAATGTT-------------------------------AATTTGCGAACTGG----TAC-----CTCAAT-TCGATATG-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................TGCGAGGTTTCGGCGGAATCGGCGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0
.....CCCAGGAAGGAAGTCAGTTCGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GTTCGTGCGAGGTTTCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CAGTTCGTGCGAGGTTTCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGGTTTCGGCGGAATCGGCGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................CGTGCGAGGTTTCGGCGGAATCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................CAGTTCGTGCGAGGTTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GAAGTCAGTTCGTGCGAGGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TCGTGCGAGGTTTCGGCGGAATCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............GGAAGTCAGTTCGTGCGAGGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGGTTTCGGCGGAATCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TCCCAGGAAGGAAGTCAGTTCGTGCGAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................GTGCGAGGTTTCGGCGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCGCTATAAAGG............	15	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TAAGTCCCAGGAAGGAAGTCAGTTCGTGCGAGGTTTCGGCGGAATCGGCGGTAAGTTTG-AGCGGC------C----------------A---------------G------------------------ACAGCATGG----CT-GGC--TAGTT-GTAGATTGGA--A-TTGTACTAA--------------------------------------------------------ACAAATGCTGCAACT--ATATCCAT-TCCTCTT---CCCTCATGCTGCTTTC---ACAC-------------------------GG-TC-----GTC--AATGCTA-TA----------------------------------------------------------------ATGTAAATGTT-------------------------------AATTTTCGAACTGG----TAC-----CTCAAT-TCGATATG-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................GCGAGGTTTCGGCGGAATCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0
.................GTCAGTTCGTGCGAGGTTTCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
........AGGAAGGAAGTCAGTTCGTGCGAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
.................GTCAGTTCGTGCGAGGTTTCGGCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0

dm3

TAAGTCCCAGGAAGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTTTG-AGCGGC------C----------------A---------------A------------------------ACAGCACGG----CT-GGC--TAGTT-GTAGATTGGT--T-ATGTACTAA--------------------------------------------------------ACAAATGCTGCAACT--ATATCCAT-TCCTCTT---CCCTCATGCTGCTTTC---ACAC-------------------------GG-TC-----GTC--AACGCTA-TA----------------------------------------------------------------ATGTAAATGTT-------------------------------AATTTGCAAACTGG----TAC-----CTCAAT-TCGATATG-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................TCAGTTCGTGCGAGGTTTCGGTGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0
......................TTCGTGCGAGGTTTCGGTGGAATCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0
.................GTCAGTTCGTGCGAGGTTTCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................AGTTCGTGCGAGGTTTCGGTGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGCGAGGTTTCGGTGGAATCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GTTTCGGTGGAATCGGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
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...........................GCGAGGTTTCGGTGGAATCGGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CAGGAAGGAAGTCAGTTCGTGCGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................T-GGC--TAGTT-GTAGATTGGT--T-ATGTAC..................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TAAGTCCCAGGAGGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTTTC-GAAGCT------C----------------A---------------ACCA---------TCTCCATAGC--ACAGAATGG----CT-GGC--TAGTT-GTAGATTGAT--A-TTGTACTAA--------------------------------------------------------ACAAATGTTGCAACT--ATATCGAT-TCCTCTT---CCCTCATGCTGCTTTC---ACAC-------------------------GG-TC-----ATC--AACGCTA-TA----------------------------------------------------------------ATGTAAATGTT-------------------------------GAATTGCAAATTGG----TAT-----CTCAAT-TCGAAATG-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................GTCAGTTCGTGCGAGGTTTCGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.....................GTTCGTGCGAGGTTTCGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.........................GTGCGAGGTTTCGGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
...........................GCGAGGTTTCGGTGGAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
........................................................TTC-GAAGCT------C----------------A---------------ACCA---------TCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
...................CAGTTCGTGCGAGGTTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
...............AAGTCAGTTCGTGCGAGGTTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
.......................TCGTGCGAGGTTTCGGTGGAATCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..........GAGGGAAGTCAGTTCGTGCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-----CTCAAT-TCGAAATG-----TAG...............................	20	1	1.00	1	0	0	0	0	0	1	0

droYak3

TAAGTCCCAGGAGGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTTTT-AGCACT------C----------------A---------------ACCA---------TTTTTATACC--ACAGAATGG----CT-GGC--TAGTT-GTAAATTGAT--A-TCGTACTAA--------------------------------------------------------ACAAATGCTGCAATT--ATATCCAT-TCCTCTT---CCCTCATGCTGCTTTC---ACAC-------------------------GG-TC-----GTC--AACGCTA-TA----------------------------------------------------------------ATGTAAATGTC-------------------------------TAATTCTAAATTGG----TAT-----TTCAAT-TCGATATG-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............AAGTCAGTTCGTGCGAGGTTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................GTCAGTTCGTGCGAGGTTTCGGTGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....CCCAGGAGGGAAGTCAGTTCGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................GTGCGAGGTTTCGGTGGAATCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.AAGTCCCAGGAGGGAAGTCAGTTCGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................GTTCGTGCGAGGTTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..............GAAGTCAGTTCGTGCGAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................AGTTCGTGCGAGGTTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................ATGG----CT-GGC--TAGTT-GTAAA.................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................GCGAGGTTTCGGTGGAATCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................GTCAGTTCGTGCGAGGTTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................GAGGTTTCGGTGGAATCGGCGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................AGTCAGTTCGTGCGAGGTTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................TTTC---ACAC-------------------------GG-TC-----GTT--G...................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1

droEug1

CAAGTCCCAGGAGGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTTAG-A-CAGCC-----A----------------A---------------ATCTTAG---------TTATCCC--TCAGATTAGCTGGCT-AGC--TAGTA-GTAGATTTAT--A-TTGTTCAAAGAC-----------------------------------------------------AAAAATGTTGCAACT--ATTTCCAT-TCCTCTTT--CCCTCATGCTGCTTTC---ACAT-------------------------GG-TC-----GTC--AACGCTT-TA----------------------------------------------------------------ATGTAAAT-TA-------------------------------ATCTTTAAAATTGG----TAC-----CACAAT-TCGATATG-----TAGGCATATTGCGCTATAAAGTAGATTTTCAGTC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAAGTCTCAGGAGGGAAGTCAGTTCGTGCGAGGTTTCGGCGGAATCGGCGGTAAGTTTTC-AAGT-TG---------------------A----------------------------------ACCC--CAAGATTAG----CT-GGC--TAGCG-GTAGATCGAT--A-TTGTTCCAA--------------------------------------------------------ACAAATGCTGCAACT--ATTTCTAT-TCCTCTT---TCCTCATGCTGCTTTTC--ACAC-------------------------GG-TC-----GTC--AACGCTA-TG----------------------------------------------------------------TTGTAAATGTA-------------------------------TACCTAAAAATTGT----GAC-----CTCT-T-CCGATACG-----TAGGCATATTGCGCTATAAAGTAGATTTCCAATC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAAGTCCCAGGAGGGAAGTCAGTTCGTGCGAGGTTTCGGCGGAATCGGCGGTAAGTTTC-AAAGT-CAAAAG-TGGAT-----------TCTA--------------------------------CCC--ACAGATTAC----CT-GGC--TAGCC-GTAGATCGAT--A-TTATTGCAA--------------------------------------------------------ACAAGTGCTGCAACT--ATTTCTAT-TCCTCTT---CCCTCATGCTGCTTTCCACACAC-------------------------GG-TC-----GTC--AACGCTA-TA-------------------------------TTTA-----------------------------TTGTAAATGTT------------------------TACTGTAAACTTTGAAATCGGAACCTAC-----CTTAAT-TCGATATG-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAAGTCTCAGGAGGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTGTTC-AAGG-C----------------------AT-------------------TG----TCTTTCGATCCT--TTGGATTAG----CT-AGC--TAGTG-GTAGCTCCAA--A-TATATATAT--------------------------------------------------------ACAAATGCTGCAACA--ATTTCCAT-TCCTCTT---CCCTCATGCTGCTTTC---ACAC-------------------------GG-TC-----GTC--AATGCTA-TA----------------------------------------------------------------ATGTAAATGTA-------------------------------AACTTTTAAATTGT----TAC-----CTCGAT-TTGATGTT-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAAGTCCCAGGAGGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTGTTC-AAGA-C----------------------AT-------------------TG----TCTTCATACCCC--ACAGATTAG----CT-GGC--TAGCG-GTAGCTCGAAATA-TTTTTCTAA--------------------------------------------------------ACAAATGCTGCAACT--ATTTCCAT-TCCTCTT---CCCTCATGCTGCTTTC---ACAC-------------------------GG-TC-----GTC--AACGCTA-TA----------------------------------------------------------------ATGTAAACTTA-------------------------------AACCTTAAACTTGA----TAC-----CTCGAT-TTTATGTG-----TAGGCATTTTGCGCTATAAAGTAGATTTCCAATC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TAAGTCCCAGGAAGGAAGTCAGTTCGTGCGAGGTTTCGGAGGAATCGGCGGTAAGTTCAC-AAAG-CA---------------------A---------------A----------TCTGTGTGTCCA--ACTGATTAG----CTAGGC--TAGTTGGTAGCTCGAT--A-TTATTCTAA--------------------------------------------------------ACAAATGCTGCAACT--ATTTCCAT-TCCTCTT---TCCTCATGCTGCTTTT---ACAC-------------------------GG-TC-----GTC--AATGCTG-TA----------------------------------------------------------------ATGTAAATGTA-------------------------------ATCTTGAAAATCGC----TAC-----CACATT-TGGATGTG-----TAGGCATATTGCGCTATAAAGTAGATTTCCAATC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAAGTCGCAGGAGGGAAGTCAGTTTGTGCGAGGTTTCGGTGGAATAGGCGGTAAGTGTTTAGC--C------C----------------A---------------GTC--------TCTGAATTC-TCTTACTGCTGGC----CC-GGC--TAGTA-GAGGCTCGAT--A-TTGTTCTAT-AT-----------------------------------------------------AAAAATGCTGCAACT--ATTTCCAT-TCCTCTT---CCCTCATGCTGCTTTA---ACAC-------------------------GG-TC-----GCC----CGCTA-TG------------------------------ATGTA-----------------------------TTGTAAATGTA-------------------------------AAT--------TAA----TAT-----C----------TGTG-----TAGGCATTTTACGCTATAAAGTAGATTTCCAATC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAAGTCCCAGGAGGGTAGCCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTACA--G-----------TGGATAT------ATC--CA-------------------------------TCCA--CTAAATTAT----C--ATC--CAGCA-GTAGAAGTAG--A-TGATTTAA-----------------------------------AACGCTA--TAATTGT-GATATACAAACTTTGTATCTCTATCTCCAT-TCCTTTTCC-CCTTAATGCTGCTTTCC--ACAC-------------------------GA-TC-----GTCACAACGCTA-TA----------------------------------------------------------------ATGTAA----------------------------------------------------------------------TAATGTG-----TAGGCATATTGCGCTATAAAGTAGATTTCCAATC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................................CTTTTCC-CCTTAATGCTGCT......................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
................AGCCAGTTCGTGCGAGGTTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.......................TCGTGCGAGGTTTCGGTGGAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..........................................................................GGATAT------ATC--CA-------------------------------TCCA--CTAAATTAT----C--.................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................AATGCTGCTTTCC--ACAC-------------------------GA-TC-----.........................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............GGGTAGCCAGTTCGTGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
............GGGTAGCCAGTTCGTGCGAGGTTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
..........GAGGGTAGCCAGTTCGTGCGAGGTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..............GTAGCCAGTTCGTGCGAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............GTAGCCAGTTCGTGCGAGGTTTCGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
....................................CGGTGGAATCGGCGGTATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0

droBip1

CAAGTCCCAGGAGGGTAGCCAGTTTGTGCGAGGTTTCGGTGGAATCGGCGGTAAGTACTG-------------TGGAC-----------ATCA-------------------------------TCCA--CTTGATTAA----CC--------------------------------------------------------TGTAGATGTAGCTGTAGTCA--------AC----TATGATGGCT--AA----ATATCTGTCTCCTTTAT--CCCTAATGCTGCTTTCC--GTAC-------------------------GA-TC-----GACACAACGCTA-TA----------------------------------------------------------------AT--------------------------------------------------------------------------------G-----TAGGCATATTGCGCTATAAAGTAGATTTCCAGTC	Size	Hit Count	Total Norm	Total
No Reads

dp5

TAAATCGCAGGAAGGAAGTCAGTTTGTGCGTGGCTTCGGTGGCATTGGCGGTAAGTCC---------------CAGACAA------ATT--CAGTTCCAGACTAGACTATCGTTAGCCGTCACACTGG--ACTGA--AG----CT-AGCTTTAGTT-GTAGTTCGAT--T-TCG----------------------------------------ATTGTAAGCTAATCAAT----TCCAAAAGTTGAAACTGTTTTTCCAT-TCCTCTT---CCCTCATGCTGCTTTA---ACACG--------AATGCAACACACGAATGG-TC-----GTC--GTGGCTT-TG------------------------------ATATTAAA----CATTTGTA-------------AATGTAAATGTA-------------------------------AA-----------------------------------TGTGTCGAATAGGTATTTTGCGCTACAAAGTAGATTTTCAATC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................AGTCAGTTTGTGCGTGGCTTCGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................GTGGCTTCGGTGGCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................TCACACTGG--ACTGA--AG----CT-AGC..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GGAAGGAAGTCAGTTTGTGCGTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................CGTGGCTTCGGTGGCATTGGCGGTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................TCAGTTTGTGCGTGGCTTCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................GTCAGTTTGTGCGTGGCTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................AGTCAGTTTGTGCGTGGCTTCGGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................TGTGCGTGGCTTCGGTGGCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................GTTTGTGCGTGGCTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................TTTGTGCGTGGCTTCGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................TCAGTTTGTGCGTGGCTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......GCAGGAAGGAAGTCAGTTTGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....CGCAGGAAGGAAGTCAGTTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

TAAATCGCAGGAGGGAAGTCAGTTTGTGCGTGGCTTCGGTGGCATTGGCGGTAAGTCC---------------CAGACAA------ATA--CAGTTCCAGACTAGACTATCGTTAGCCGTCACACTGG--ACTGG--AG----CT-AGCTTTAGTT-GTAGTTCGAT--T-TCG----------------------------------------ATTGTAAGCTAATCAAT----TCCAAAAGTTGAAACTGTTTTTCCAT-TCCTCTT---CCCTCATGCTGCTTTA---ACACG--------AATGCAACACACGAATGG-TC-----GTC--GTGGCTT-TG------------------------------ATATTAAA----CATTTGTA-------------AATGTAAATGTA-------------------------------AA-----------------------------------TGTGTCGAATAGGTATTTTGCGCTACAAAGTAGATTTTCAATC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................GCGTGGCTTCGGTGGCATTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
.........................................................................................................................................................................T-TCG----------------------------------------ATTGTAAGCTAATC...............................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
....................AGTTTGTGCGTGGCTTCGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0
.........................GTGCGTGGCTTCGGTGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..................................................................................................................AGCCGTCACACTGG--ACTGG--A.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................AGTTTGTGCGTGGCTTCGGTGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................TTTTCCAT-TCCTCTT---CCCT...............................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.AAATCGCAGGAGGGAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...............................GGCTTCGGTGGCATTGGCGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
..............GAAGTCAGTTTGTGCGTGGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
..................................................................................................................AGCCGTCACACTGG--ACTGG--G.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........GAGGGAAGTCAGTTTGTGCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.........................GTGCGTGGCTTCGGTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
................................GCTTCGGTGGCATTGGCGGTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droWil2

TAAATCTCAGGAGGGTAGCCAGTTTGTGCGAGGATTCGGTGGGATTGGTGGTAAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................GCGAGGATTCGGTGGGATTGGTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	1	1	0
.AAATCTCAGGAGGGTAGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.....................GTTTGTGCGAGGATTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
................AGCCAGTTTGTGCGAGGATTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...ATCTCAGGAGGGTAGCCAGTTTGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.......CAGGAGGGTAGCCAGTTTGTGCGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
.....................GTTTGTGCGAGGATTCGGTGGGATTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.....................GTTTGTGCGAGGATTCGGTGGGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.............................GAGGATTCGGTGGGATTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.............................GAGGATTCGGTGGGATTGGTGGTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.....CTCAGGAGGGTAGCCAGTTTGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.....................GTTTGTGCGAGGATTCGGTGGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.......CAGGAGGGTAGCCAGTTTGTGCGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0

droVir3

CAAATCTCAGGAGGGCAGTCAGTTTGTGCGAGGTTTCGGTGGCATTGGCGGTAAGTGG---------------TTGACAA------A-------------------------------------------AGCGCC--T------------------------CTAT--A-TTGATATAT-ATAC---------ACATATTTGAATACAGTACGAGTGTAAGCTAAAAAAT----TAATTACGTATCTACT--GTTTCGAT-TCCTCTT---CCTTCATGCTGCTTTA---AAACATAACTCTAAATGTAACT------TAATTCAACTTGAC--GTCGCTCCTTGTCCATAACCATCA-ACTATACTTGTTTTAAT---ATATGAACATATATATTATTTATTTAAAATT----ATA------------------------------------------------------------------TATATGTG-----TAGGCATTTTGCGCTATAAAGTAGATTTTCAATC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................GAGGTTTCGGTGGCATTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CGAGGTTTCGGTGGCATTGGCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CAAATCTCAGGAGGGCAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...ATCTCAGGAGGGCAGTCAGTTTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GTTTGTGCGAGGTTTCGGTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........AGGGCAGTCAGTTTGTGCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................CAACTTGAC--GTCGCTCCTTGTCCATAACC................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AAATCTCAGGAGGGCAGTCAGTTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AATCTCAGGAGGGCAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TTCGGTGGCATTGGCGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......CAGGAGGGCAGTCAGTTTGTGCGAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AATCTCAGGAGGGCAGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CAAATCTCAGGAGGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GCGAGGTTTCGGTGGCATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............GGCAGTCAGTTTGTGCGAGGTTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GCGAGGTTTCGGTGGCATTGGCGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TGTGCGAGGTTTCGGTGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATCTCAGGAGGGCAGTCAGTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................AGTCAGTTTGTGCGAGGTTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TTGTGCGAGGTTTCGGTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CAGGAGGGCAGTCAGTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................AGTCAGTTTGTGCGAGGTTTCGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TCAGTTTGTGCGAGGTTTCGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................AGTCAGTTTGTGCGAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GGCAGTCAGTTTGTGCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TAC---------ACATATTTGAATACA..................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAAATCTCAGGAGGGCAGCCAGTTTGTGCGAGGTTTCGGTGGCATTGGCGGTAAGTAG---------------TTGAC-----------A---------------A------------------------ACAGCC--T----CT-GGT--T-------------------------TAT-ATA----TTTTTTAAATATCTGTATATAGTGCGAGTGTAAGCTAAACAAT----TAATTACGTATCTATT--GTTTCCAC-TCCTCTT---CCTTCATGCTGCTTTT---AAACATAACTCTAAATGTAACT------TGG-TCAACTTGAC--GACGCTC-TTGTGCATAACCATCAAACTTTACTTGTTTTAAT---ATA----CATATATA-------------TATATATATATATATATATACTTATATTTATGTATA-------T-------ATTTGTTATTTAAATTAATTCAATCTATATATA-----TAGGCATATTGCGCTATAAAGTAGACTTTCAATC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................GTGCGAGGTTTCGGTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	1	0	0	0	0	1
.....................GTTTGTGCGAGGTTTCGGTGGCATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..........GAGGGCAGCCAGTTTGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
......................TTTGTGCGAGGTTTCGGTGGCATTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.....................GTTTGTGCGAGGTTTCGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................TTTGTGCGAGGTTTCGGTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................GTTTGTGCGAGGTTTCGGTGGCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TCAACTTGAC--GACGCTC-TTG.........................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................GGTTTCGGTGGCATTGGCGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.....................GTTTGTGCGAGGTTTCGGTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.....CTCAGGAGGGCAGCCAGTTTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droGri2

CAAATCTCAGGAGGGCAGTCAGTTTGTGCGAGGTTTCGGTGGCATTGGCGGTAAGTCG---------------GTAACAATTATCAA-------------------------------------------ACTACC--T----TA--------------------------------TAT-ATATTTATATCTGAACAATCTGTATATAGTGCGAGTGTAAGCTACAAAAT----TAATTACGTATCTACT--GTTTCCAT-TCCTTTTCCTCCTTCATGCTGCTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................CAGTTTGTGCGAGGTTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	1
.....CTCAGGAGGGCAGTCAGTTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1
..........................TGCGAGGTTTCGGTGGCATTGGCGGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1
.................GTCAGTTTGTGCGAGGTTTCGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0
..AATCTCAGGAGGGCAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1
...ATCTCAGGAGGGCAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
CAAATCTCAGGAGGGCAGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1
...................................TCGGTGGCATTGGCGGTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
.........................GTGCGAGGTTTCGGTGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0

dsi_7463

3l:19913344-19913493 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads