ID:

dsi_7461

 Coordinate:

2l:18253858-18254007 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.2 -2.9 -2.8

Flybase annnotation

three_prime_UTR [2l_18253489_18254175_+]; exon [2l_18253427_18254175_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
CTAAAGGAGACACAAAAGAAAATCAAGAATCTATTTTGTAAGGACTTATTGTAAGTATGCACTTCGATATTTCGAGAGCATACAATACATTTTTAGATTTTAGTCATGAAGAATCTCACAACGAACTACGGAAAACCAGTTTCAATTGCATTCTGAGCAAAAAATGTACAAAGTTTTAAGCTTTTTTTTTAATGCTAAATGTGCAATAGTAAGTTAATTATTAGCTTCGAATATCTACGGAATAAGTTGG
*******************************************************************...........................(((((((........)))))))................********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 M024
male body		 M025
embryo
......................................................................................................................................................................................................................TAATTATTAGCTTCGAATATCTACGGAA........ 28 0 1 5.00 5 2 1 0 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................TTATTAGCTTCGAATATCTACGGAA........ 25 0 1 5.00 5 3 2 0 0 0 0 0 0 0 0
...............................TATTTTGTAAGGACTTATTGTAAGTA................................................................................................................................................................................................. 26 0 1 5.00 5 2 2 0 0 1 0 0 0 0 0
........................................................................................................CATGAAGAATCTCACAACGAACTACGGA...................................................................................................................... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
............................................................................................................................................TTCAATTGCATTCTGAGCAAAAAGTG.................................................................................... 26 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...................................................................TATTTCGAGAGCATACAATACATTTTT............................................................................................................................................................ 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.....................ATCAAGAATCTATTTTGTAAGGACT............................................................................................................................................................................................................ 25 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0
.................................................................................................................TCTCACAACGAACTACGGAAAACCAGT.............................................................................................................. 27 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0
.....................................................................................TACATTTTTAGATTTTAGTCATGAAGA.......................................................................................................................................... 27 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0
................................................................................................................ATCTCACAACGAACTACGGAAAACCA................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................TTCTGAGCAAAAAGTGTACAAAGGT........................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................ACTTCGATATTTCGAGA............................................................................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............AAAAGAAAATCAAGAAT............................................................................................................................................................................................................................ 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................TGAAGAATCTCACAACGAACTACGGAA..................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................TCTCACAACGAACTACGGAAAACCAG............................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................TTCGAGAGCATACAATACATTTTTAGA......................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................TTCGATATTTCGAGAGCATACAATACA................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGCTTCGAATATCTACGGA......... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................TACGGAAAACCAGTTTCAATTGCAT................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................................................ATTTTTAGATTTTAGTCATGAAG........................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................TATTAGCTTCGAATATCTACGGA......... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................TATTTTGTAAGGACTTATTGTAAGT.................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................TTGTAAGTATGCACTTCGATATTTCGAG.............................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TCATGAAGAATCTCACAACGAACTACGGAA..................................................................................................................... 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TAATTATTAGCTTCGAATATCTA............. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................AGGACTTATTGTAAGTATGCACTTC......................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................TTCAATTGCATTCTGAGCAAAAAATG.................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................TACGGAAAACCAGTTTCAATTGCATTC................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................CAGTTTCAATTGCATTCTGAGCAAAAAG...................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................TTTCGAGAGCATACAATACATTTTTAGA......................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................TCTGAGCAAAAAATGTACAAAGTTT.......................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................CATGAAGAATCTCACAACGAACTACGGAA..................................................................................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTAATTATTAGCTTCGAATATCTACGGAA........ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................TTTAGATTTTAGTCATGAAGAATCT...................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................TACAATACATTTTTAGATTTTAGTCATGA............................................................................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................TACAATACATTTTTAGATTTTAGTCA................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................GTGAAGAGTCTCACAAC................................................................................................................................ 17 2 6 0.33 2 0 0 0 0 2 0 0 0 0 0
...AAGGAGACACAAGAG........................................................................................................................................................................................................................................ 15 1 9 0.33 3 0 1 0 0 2 0 0 0 0 0
................................................................................................ATTTTAGTCATGAAGT.......................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0
...AAGGAGACATAAGAGAA...................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................GCAATAGTAAGTTAGTA............................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GATTTCCTCTGTGTTTTCTTTTAGTTCTTAGATAAAACATTCCTGAATAACATTCATACGTGAAGCTATAAAGCTCTCGTATGTTATGTAAAAATCTAAAATCAGTACTTCTTAGAGTGTTGCTTGATGCCTTTTGGTCAAAGTTAACGTAAGACTCGTTTTTTACATGTTTCAAAATTCGAAAAAAAAATTACGATTTACACGTTATCATTCAATTAATAATCGAAGCTTATAGATGCCTTATTCAACC
**********************************************************************************************************************...........................(((((((........)))))))................******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M025
embryo
.....................................................................................................................TGTTGCTTGATGCCTTTTGGT................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................GAGGCTTATAGATGC........... 15 1 6 0.67 4 0 0 4 0 0 0 0 0
........................................................................................................GTACTACTTGGAGTGTCGCT.............................................................................................................................. 20 3 3 0.67 2 2 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GAGGCTTATAGATGCTT......... 17 2 11 0.27 3 0 0 3 0 0 0 0 0
.....................................................................................................................................................................................AAAAAAAAGTTACGATTTCCAT............................................... 22 3 5 0.20 1 0 0 0 1 0 0 0 0
........................................................................GGTCTCGTATGTTCTGTA................................................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 1 0 0 0
...............................................................................................................................................TTAACGTAAGACTCTTT.......................................................................................... 17 1 5 0.20 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAAAAAATTAAGGTTTACACTT............................................. 22 3 9 0.11 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................CAAAATTCGTAAAAAAAA............................................................ 18 1 10 0.10 1 0 1 0 0 0 0 0 0
..............TTTGTTTTAGTTCTTAG........................................................................................................................................................................................................................... 17 1 10 0.10 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGTCCGACTTACACGTTAT.......................................... 19 3 20 0.10 2 0 0 0 0 0 1 0 1
...............................................................................................................TTAGTGTGTTGCTTGATTC........................................................................................................................ 19 2 10 0.10 1 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................AGCTTAGAGAGGCCTTA....... 17 2 11 0.09 1 1 0 0 0 0 0 0 0
.............................................................................................................................................AGTGAACGTAAGACT.............................................................................................. 15 1 13 0.08 1 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................AGGCTTATAGATGCCTA........ 17 2 14 0.07 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................AGGCTTATAGATGCTTTA....... 18 2 19 0.05 1 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................GGAGGCTTATAGATGC........... 16 2 20 0.05 1 0 0 0 0 0 1 0 0
.........................................GCTGAAAAACATTCGTACG.............................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................AATGCTCTCGGATGTAAT................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:18253808-18254057 + dsi_7461 CTAAAGGA----G-ACA-C--------------AAA-AG---AAAATCAAGAATCTATTTTGTAAGGACTTATTGTAA---GTATGC------ACTTCGATATTTCGAGAGCATAC-AATACATTTTTAGATTTTAGTCA-----TG-AAGAATCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCAGT--TTCAATTGCATTCTGAGCA-AAAA-----ATGTACAAAGTTTT-AAGC-TTT---------------------------------TTTTTTAATGC--TAAATGTGCAATAGTAAGTTAATTATT-AGCTTCGAATATCTA--------CGGAA----TAAG-TTGG
droSec2 scaffold_7:2319709-2319957 + CTAAAGGA----G-ACA-C--------------AAA-AG---AAAATCAAGAATCTATTTTGTAAGGACTTATTGTAA---GTATGC------ACTTCGATATTTCGAGAGCATAC-AATACATTTTTAGATTTTAGTCA-----TG-AAGAATCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCAGT--TTCAATTGCATTCTGAGCA-AAAA-----GTGTACAAAGTTTT-AAGC-TTT---------------------------------TTT-TTAATGC--TAAATGTGCAATAGTAAGTTAATTATT-AGCTTCGAATATCTA--------CGAAA----TAAG-TTGG
dm3 chr2L:18698205-18698452 + CTAAAGGA----G-ACA-C--------------AAA-AG---AAAATCAAGAAACTATTTTGTAAGGACTTATTGTAA---GTATGC------ACTTCGATATTTCGAGAGCATAC-AATACATTTTTAGATATTAGTCA-----TG-AAGAATCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCCGT--TTCAATTGCATTCTGAGCA-AAAA-----GTGTACAAAGTTTT-AAGCTTTT---------------------------------TTT---AATGC--TAAATGTGCAATAGTAAGTTAAATATT-AGCTTCGAGTATATA--------CGGAA----TAAG-TTGG
droEre2 scaffold_4845:5577836-5578081 - CTTAAAGA----G-ACA-C--------------TGAAGA----AA-ACAAGAATCTATTTTGTAAGCACTTATTGTAA---TTACGC------ATTTCGATATTTCGAGAGCATAC-AATACATTTTTAGATTATAGTCA-----TG-AAAAATCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCAGT--TTCAATTGCATTTTGAGCA-AAAA-----GTGTACAAAGTTTT-AAGC-TTT---------------------------------TTT---AATGC--TAAATGTGCAATAGTAAGTTAATCATT-AGCCTCGAGTATCTA--------CAGAA----TAAG-TTTG
droYak3 2R:5211865-5212108 + CTAAAAGA----G-ACA-C--------------TAAAGA---AAAAAAAACAATCTATTTTGTAAGGACTTATTGTAA---TTACGC------ATTTCGATATTTCGAAAGC-----AATACATTTTTAGATTATAGTCA-----TG-AAAAATCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCAGT--TTCAATTGCATTCTGAGCA-AAAA-----GTGTACAAAGTTTT-AAGC-TTT---------------------------------TTT---AATGC--TAAATGTGCAATAGTAAGTTAATTATT-AGCCTCAAATATCTA--------CAGAA----TAAG-TTTG
droEug1 scf7180000409447:643250-643493 + CTAAAAAG----GTAAA-T--------------GGAAAG---AATCAC---AATCTATTTTGTAAGGACTTATTGTAA---GTGCGC------ATTTCGATATTTCGAGAGCCTAC-TGTACAT-TTTAGATTATAATCA-----TG-AAAAATCTCACAACG-------------------------------------------------AACTACGAAAA-AAGCCAGC--TTCAATTGCATTCTGGAAA-AAAA-----GTGTACAAAGTTTA-AAGC-TT------------------------------------T---TATGC--AAAATGTGCAATATTATGTTTATTATT-AGCTTCGAATAACTA--------CGGAA----TAAG-TTGG
droBia1 scf7180000302422:4978798-4979031 - CTAGATGG----G-AAA-C--------------GGAAAG---AAACACATAAATCTATTTTGTAAGGACTTATTGTAA---GTGCGT------ATTTCGATATTTCGAGAGCCTAG-CGTAC-TTTTTAGATTTTAACCA-----AG-GAAAATCTCACAACG-------------------------------------------------AACTACAAACA-A--CAAGC--TTCAATTGCATTCCGGGCA--AAA-----GTGTACAAAGTTTT-GAGC-AAT---------------------------------TTT---TTTGC--GAAATGTGCAAT-----GTTAGTTTTT-AGCTTCGAATATCT-------------------AAG-TTGG
droTak1 scf7180000414323:110438-110671 + CTAGAAGG----G-AAA-C--------------GGATGA---AAACACGAGAATCTATTTTGTAAGGACTTATTGTAA---GTACGC------ATCTCGATATTTCGAGTGCCTAC-CGTACTTTTTTAGATTATAGCCA-----AT-GAAAATCTCACAACG-------------------------------------------------AACTACAGAAAAAAAACAG-------------------GCA-AAAA-----GTGTACAAAGTTTT-AGGC-TTC---------------------------------TTT---TATGC--TAAATGTGCAATATTATGTTAGTTATT-AGCTTCGAATATCTA--------TGAAA----TAAG-TTGG
droEle1 scf7180000491338:2675665-2675908 + CTAGAAGG----G-AAA-C--------------GAAAAG---AAACACAAAAATCTATTTTGTAAGGACTTATTGTAT---GTAAGC------TTTTCGATATATCGAGAGC-TAT-TGTAC-TTTTTAGATCATAATCA-----AG-GAAAATCTCACAACGA------------------------------------------------AACTATGGAAA-AA-CCAG-----CAAATGCATTCTGGGCA-AAAA-----GTGTACAAAGTTTT-AAGC-TTC---------------------------------TTT---TATGA--CAAACGTGCAATATTTATTTAATTATT-AGCTTCGAATATCTA---------GAAC----TAAG-TTGG
droRho1 scf7180000780030:123321-123567 - CTAGAAGG----A-AAA-C--------------GAAAAG---AAACACAAGAATCTATTTTGTAAGGACTTATTGTAT---GTAAGC-------TTTCGATATATCGAAAGC-TAC-TGTAC-TTTTTAGATTATAATCA-----AG-AAACATCTCACAACG-------------------------------------------------AACTATGGAAA-AAACCAGC--TTCAATTGCATTCTGAGCA-AAAA-----GTGTACAAAGTTTT-AAGC-TTC---------------------------------TTT---TACGA--TAAACGTGCAATATTTTGTTAATTATT-AGCTTCGAATATCTA--------AGGAA----TAAG-TTGG
droFic1 scf7180000454059:234582-234823 - CGAA--GG----G-AAA-C--------------TGAAAG---AAACACAAGAATCTATTTTGTAAGGACTTATTGTAA---GTACGC------ATTTCGATATTTCGAAGGCATAC-TGTAGTTTTTTAGATTATAATCA-----CG-GAAAATCTCACAACG-------------------------------------------------AACTACGGAAA-AG-ACAGC--T-----TGCAGTCTTGTCC-AAAA-----GTGTACAAAGTTTT-AAGC-TTC---------------------------------TTA---AATGC--TAAACGTGCAATATTAATTTAATTATT-AGCTTCGAATATCTA--------CGGAA----TAAG-TTGG
droKik1 scf7180000302684:337896-338124 - CTAAAAGG----G-AAT-C--------------TGAA------CACAAAAGAATCTATTTTGTAAGGACTTATTGTATGATGTAAGCATCGATATTTTGATATTTCGAGAGCCCATGTGTAC-TTTTTAGAGTGTAATCA-----AGGAATAATCTCACAACG-------------------------------------------------AACTGCT----------------------GCATACTTAATA-CAAATTCTTATGTACAAAGTTTT-TGGC-------------------------------------------------------GTGCAATATTAAGTTAATTATCCTGCTTCGAATATCTA--------TGGAA----TAAGTTTGG
droAna3 scaffold_12916:2585321-2585572 + CTCACTAGTGTGG-AAATC--------------GAAAAA---GAATGCATGAATCTATTTTGTAAGGACTTATTGTAC---GTACGT------ATTTCGATATTTCGAGAACTTGC-TATACGTTTTTCAATAATCCACG-----CC-AGAAACCGCACAACG-------------------------------------------------AACTACAGAAA----CCCGC--TTC---------TCGAAAA-CAAA-----ATGTACAAACATTTAATGC-TTT---------------------------------TTT---TATGC--TGAACGTGCAATACTAAGTTAATTATT-AGCTTCGAATATTTACATAAATACGGAA----TAAG-TTGG
droBip1 scf7180000396430:521381-521625 + CTCAAGTG----G-AAA-T--------------CGAAAA---AGATACATGAATCTATTTTGTAAGGACTTATTGTAC---GTACGT------ATTTCGATATTTCGAGAATTTGC-TATACGTTTTTCAATAATCCACG-----CC-AGAAATCTCACAACG-------------------------------------------------AACTACAGAAA----CCCGC--TT----------CTC-GAA-AAAA-----ATGTACAAACATTTTAAGC-TTC---------------------------------TTT---TATGC--TAAACGTGCAATACTAAGTTAATTATT-AGCTTTGAATATTTACATAAATACGAAA----TAAG-TTGG
dp5 4_group3:8021633-8021873 + AAAGCTGGTAAAG-AAA-----CAACACTCG---------------ACAAAAATGTATTTTGTAAAAACATATTGTAT---GT----------ATTTCGATATTTCGAGAGCCTAC-TGTACTTTTTTAGAT---AATCA-----AG-AAACCTG-----------------------------------------------CTGCACAACGAA-------AA----CCCGCTCTTCAAATGCATTCCCCTCAAAAAA-----GTGTACAAAGTTTTAAAAC-TTT---------------------------------TTT---TACGC--TAAATAAGCAATATTTTGTTAATTTTT-AGCTTCGAATATCTA--------TTGGA----TAAG-TTGG
droPer2 scaffold_1:9471179-9471419 + AAAGCTGGTAAAG-AAA-----CAACACTCG---------------ACAAAAATGTATTTTGTAAAAACATATTGTAT---GT----------ATTTCGATATTTCGAGTGCCTAC-TGAACTTTTTTAGATA---TTCA-----AG-AAACCTG-----------------------------------------------CTGCACAACGAA-------AA----CCCGCTCTTCAAATGCATTCCCCTCAAAAAA-----GTGTACAAAGTTTTAAAAC-TTT---------------------------------TTT---TACGC--TAAATAAGCAATATTTTGTTAATTTTT-AGCTTCGAATATCTA--------TTGGA----TAAG-TTGG
droWil2 scf2_1100000004585:4174485-4174639 + ATTTACTTTATAA-GAA-----TAACTT-----------------------------------------TAACTCTAA---ATGTAA------A--------TTTCCG-------------------------------------GG-ATAAACCAGGCAACG-------------------------------------------------AATTTTAGC---A--CAGGC--TTTAATTCCCCAACAAACAAAAAA-----TTGTATAAAGTTTT-AT---------------------------------------TCC---AA------TAATGTGCAATATTAAGTTTATCA-----------------------------AT----TAGC-TTGG
droVir3 scaffold_12963:16202374-16202617 + CTCAAAAA----T-TAA-A--------------AAA-AA---AAAAATAATAATCTATTTTGTAATAACTTAC-------------C------ACTTGTATATTTCGAGGAGGTA------C-TTTTTA--------CCA--AA-AG-AAAAACTGCGCAACG-------------------------------------------------AACG--------A--GCCGC--TTCAATTGTAACCCA---T-AAAA-----TTGTACAAAGTTTTTAATC-TTAATTTAATTGG-AATGCACTGTAGA---GTGCCATTT---TATAT--AAAACGTGTAATAT-----TATTTATA-AGCTTTGAATATAAT--------TTTAATAATTATT-TTCG
droMoj3 scaffold_6500:5664987-5665266 + TCAAATGA----T-GGG-C--------------TGGAATATTTAATGAATATGTCTATTTTTTAATAACTTACC-------------------ACTTGTATATTTCGAGGAGGTA------C-TTTTTA--------CCACAAATTG-AA---------AGCAAAACTAAGAAATG-----------ATGAAAAAAAGAAAACTGCGCAACTATCG--------A--TCCAC--TTAAATTGCAAGTCA--TA-AAAT-----GTGTACAAAGTTCATTAAC-TGAAATTAATTGATTAAGCACTCTCAATTAGT-ACATTT---GATACAAGAAACGTGTAATAT-----TATTTATA-AGCTTCGTATATTTA--------TATAA----TG---ATAA
droGri2 scaffold_15252:13633521-13633768 + TGAAAAAA----A-AAT-CATAAAAAACTCAGCAGACATA------TAATATCTCTATTTTGTAATAACTTAC-------------C------ACTTGTATATTTCGAGAGGGTA------C-TTTTTA--------CCA--AAGTG-AAAAATATCAAAACAT-----AAAAAGAACATTTAAAAAACAAAAATCCGAAAACTACGCATCGAACG--------T--GCAGC--TTCAAATGCATTCCAC-AA-ATAA-----TTGTACAAAGTTTTTAAGC-TTAA--------------------------------TTT---TTTAA--AAGAC----------TTGTTTATTGTA-AGCTTTGAAT-------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTAAAGGA----G-ACA-C--------------AAA-AG---AAAATCAAGAATCTATTTTGTAAGGACTTATTGTAA---GTATGC------ACTTCGATATTTCGAGAGCATAC-AATACATTTTTAGATTTTAGTCA-----TG-AAGAATCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCAGT--TTCAATTGCATTCTGAGCA-AAAA-----ATGTACAAAGTTTT-AAGC-TTT---------------------------------TTTTTTAATGC--TAAATGTGCAATAGTAAGTTAATTATT-AGCTTCGAATATCTA--------CGGAA----TAAG-TTGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................TAATTATT-AGCTTCGAATATCTA--------CGGAA----.........2815.00500000012110000000
..................................................................................................................................................................................................................................................................................................................................................................TTATT-AGCTTCGAATATCTA--------CGGAA----.........2515.00500000023000000000
.......................................................TATTTTGTAAGGACTTATTGTAA---GTA.............................................................................................................................................................................................................................................................................................................................2615.00500000022001000000
..........................................................................................................................................CA-----TG-AAGAATCTCACAACG-------------------------------------------------AACTACGGA....................................................................................................................................................................................2812.00200000000000002000
....................................................................................................TATTTCGAGAGCATAC-AATACATTTTT.................................................................................................................................................................................................................................................................................2712.00200000000000002000
.............................................ATCAAGAATCTATTTTGTAAGGACT...........................................................................................................................................................................................................................................................................................................................................2512.00220000000000000000
.........................................................................................................................................................TCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCAGT--.......................................................................................................................................................................2712.00200000000002000000
.......................................................................................................................TACATTTTTAGATTTTAGTCA-----TG-AAGA.........................................................................................................................................................................................................................................................2712.00200000001010000000
........................................................................................................................................................ATCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCA...........................................................................................................................................................................2611.00100000000000010000
.............................................................................................ACTTCGATATTTCGAGA...................................................................................................................................................................................................................................................................................................1711.00100000001000000000
.................................AAA-AG---AAAATCAAGAAT...........................................................................................................................................................................................................................................................................................................................................................1711.00100000000100000000
.................................................................................................................................................TG-AAGAATCTCACAACG-------------------------------------------------AACTACGGAA...................................................................................................................................................................................2711.00100000000000001000
.........................................................................................................................................................TCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCAG..........................................................................................................................................................................2611.00100000000000001000
.......................................................................................................TTCGAGAGCATAC-AATACATTTTTAGA..............................................................................................................................................................................................................................................................................2711.00100000000100000000
...............................................................................................TTCGATATTTCGAGAGCATAC-AATACA......................................................................................................................................................................................................................................................................................2711.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................AGCTTCGAATATCTA--------CGGA..............1911.00101000000000000000
.......................................................................................................................................................................................................................TACGGAAA-A--CCAGT--TTCAATTGCAT............................................................................................................................................................2511.00100000000001000000
..........................................................................................................................ATTTTTAGATTTTAGTCA-----TG-AAG..........................................................................................................................................................................................................................................................2311.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................TATT-AGCTTCGAATATCTA--------CGGA..............2311.00100000001000000000
.......................................................TATTTTGTAAGGACTTATTGTAA---GT..............................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
........................................................................TTGTAA---GTATGC------ACTTCGATATTTCGAG....................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.........................................................................................................................................TCA-----TG-AAGAATCTCACAACG-------------------------------------------------AACTACGGAA...................................................................................................................................................................................3011.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................TAATTATT-AGCTTCGAATATCTA--------..................2311.00100000000100000000
................................................................AGGACTTATTGTAA---GTATGC------ACTTC...............................................................................................................................................................................................................................................................................................................2511.00100000000000010000
..........................................................................................................................................................................................................................................TTCAATTGCATTCTGAGCA-AAAA-----ATG.......................................................................................................................................2611.00100000010000000000
.......................................................................................................................................................................................................................TACGGAAA-A--CCAGT--TTCAATTGCATTC..........................................................................................................................................................2711.00100000001000000000
....................................................................................................................................................................................................................................CAGT--TTCAATTGCATTCTGAGCA-AAAA-----G.........................................................................................................................................2811.00100000010000000000
......................................................................................................TTTCGAGAGCATAC-AATACATTTTTAGA..............................................................................................................................................................................................................................................................................2811.00100000000100000000
.....................................................................................................................................................................................................................................................TCTGAGCA-AAAA-----ATGTACAAAGTTT.............................................................................................................................2511.00100000001000000000
..........................................................................................................................................CA-----TG-AAGAATCTCACAACG-------------------------------------------------AACTACGGAA...................................................................................................................................................................................2911.00100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................TTAATTATT-AGCTTCGAATATCTA--------CGGAA----.........2911.00100000001000000000
.............................................................................................................................TTTAGATTTTAGTCA-----TG-AAGAATCT.....................................................................................................................................................................................................................................................2511.00100000000001000000
.................................................................................................................TAC-AATACATTTTTAGATTTTAGTCA-----TG-A............................................................................................................................................................................................................................................................2911.00100000010000000000
.................................................................................................................TAC-AATACATTTTTAGATTTTAGTCA-----................................................................................................................................................................................................................................................................2611.00100000000100000000
..................................................................................................................................ATTTTAGTCA-----TG-AAGT.........................................................................................................................................................................................................................................................1640.25100000000001000000
droSec2
CTAAAGGA----G-ACA-C--------------AAA-AG---AAAATCAAGAATCTATTTTGTAAGGACTTATTGTAA---GTATGC------ACTTCGATATTTCGAGAGCATAC-AATACATTTTTAGATTTTAGTCA-----TG-AAGAATCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCAGT--TTCAATTGCATTCTGAGCA-AAAA-----GTGTACAAAGTTTT-AAGC-TTT---------------------------------TTT-TTAATGC--TAAATGTGCAATAGTAAGTTAATTATT-AGCTTCGAATATCTA--------CGAAA----TAAG-TTGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................ATGC------ACTTCGATATTTCG......................................................................................................................................................................................................................................................................................................1811.0010010
...........................................................................................................................................A-----TG-AAGAATCTCACAACG-------------------------------------------------A............................................................................................................................................................................................1911.0011000
dm3
CTAAAGGA----G-ACA-C--------------AAA-AG---AAAATCAAGAAACTATTTTGTAAGGACTTATTGTAA---GTATGC------ACTTCGATATTTCGAGAGCATAC-AATACATTTTTAGATATTAGTCA-----TG-AAGAATCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCCGT--TTCAATTGCATTCTGAGCA-AAAA-----GTGTACAAAGTTTT-AAGCTTTT---------------------------------TTT---AATGC--TAAATGTGCAATAGTAAGTTAAATATT-AGCTTCGAGTATATA--------CGGAA----TAAG-TTGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................TTGTAAGGACTTATTGTAA---GT..............................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TGTAAGGACTTATTGTAA---GTATGC------ACT.................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TTCGATATTTCGAGAGCATAC-AATACATT....................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TAAGGACTTATTGTAA---GT..............................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TTTTGTAAGGACTTATTGTAA---GTATG...........................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TTAGTCA-----TG-AAGAATCTCACAACG-------------------------------------------------AAC..........................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................A---GTATGC------ACTTCGATATTTCGAGAGCA................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TCACAACG-------------------------------------------------AACTACGGAAA-A--CCCGT--T......................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TAAGGACTTATTGTAA---GTATGC------ACT.................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CTCACAACG-------------------------------------------------AACTACGGAAA-A--CCCGT--T......................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TATTAGTCA-----TG-AAGAATCTCACAACG-------------------------------------------------.............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TAGTCA-----TG-AAGAATCTCACAACG-------------------------------------------------AAC..........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................GAGTATATA--------CGGAA----TAAG-TTGG2211.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TG-AAGAATCTCACAACG-------------------------------------------------AACTACGGAAA-A--C.............................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTAGATATTAGTCA-----TG-AAGAATCTC....................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................A---GTATGC------ACTTCGATATTTCGAGAGC.................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................AAAA-----GTGTACAAAGTTTT-A..........................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................TATTTTGTAAGGACTTATTGT.....................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AACG-------------------------------------------------AACTACGGAAA-A--CCCGT--TTC....................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................AAGAATCTCACAACG-------------------------------------------------AACTACG......................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CTCACAACG-------------------------------------------------AACTACGGAAA-A--CCCGT--.......................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................AGAATCTCACAACG-------------------------------------------------AACTACGGAAA-A--..............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TCACAACG-------------------------------------------------AACTACGGAAA-A--CCCGT--TT.....................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................T--TTCAATTGCATTCTGAGCA-AAAA-----GTG.......................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................CCCGT--TTCAATTGCATTCTGAGCA-AA.................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................TTCGATATTTCGAGAGCATAC-AATAC.......................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AATACATTTTTAGATATTAGTCA-----T...............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................ATTGCATTCTGAGCA-AAAA-----GTGTACA...................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AAAATCAAGAAACTATTTTGTAAGGACTT..........................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................AGGACTTATTGTAA---GTATGC------A...................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CA-AAAA-----GTGTACAAAGTTTT-AAGCT......................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................TATTTCGAGAGCATAC-AATACAT.....................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................TAAATATT-AGCTTCGAGTATATA--------CGGAA----.........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CCGT--TTCAATTGCATTCTGAGCA-AA.................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AAAGGA----G-ACA-C--------------AAA-AG---AAAAT..................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AAAGGA----G-ACA-C--------------AAA-AG---AAAA...................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................G-AAGAATCTCACAACG-------------------------------------------------AAC..........................................................................................................................................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TATTTTGTAAGGACTTATTGTAA---G...............................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TATT-AGCTTCGAGTATATA--------CGGAA----TAAG-TT..3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TCAATTGCATTCTGAGCA-AAAA-----GTGTA.....................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................TT-AGCTTCGAGTATATA--------CGGAA----TA.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................TCA-----TG-AAGAATCTCACAACG-------------------------------------------------AACTAC.......................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TTAAATATT-AGCTTCGAGTATATA--------CGGAA----.........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................ATATTTCGAGAGCATAC-A...........................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................TTAGATATTAGTCA-----TG-AAGA.........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TTTCGAGAGCATAC-AATACATTTTTAGA..............................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................T-AAGCTTTT---------------------------------TTT---AATGC--TAAATGTGC............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GC--TAAATGTGCAATAGTA.....................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................CA-----TG-AAGAATCTCACAACG-------------------------------------------------AACTACGGA....................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TTTCGAGAGCATAC-AATACATTTTT.................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TACAAAGTTTT-AAGCTTTT---------------------------------TTT---AATGC--.....................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TT-AGCTTCGAGTATATA--------CGGA..............2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCCGT--TT.....................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCCGT--T......................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TAAATATT-AGCTTCGAGTATATA--------CGG...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................AATCAAGAAACTATTTTGTAAGGACT...........................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCC...........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................C------ACTTCGATATTTCGAGAGCATAC-AATA........................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTAGATATTAGTCA-----TG-AAGAATCTCACA.................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TTT-AAGCTTTT---------------------------------TTT---AATGC--TAAATG...............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCATTCTGAGCA-AAAA-----GTGT......................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TATTTCGAGAGCATAC-AAT.........................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TCGATATTTCGAGAGCATAC-AATACATT....................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TATTAGTCA-----TG-AAGAATCTCACAACG-------------------------------------------------AAC..........................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TCAAGAAACTATTTTGTAAGGACT...........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................T-AGCTTCGAGTATATA--------CGGAA----TAAG-....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...............................................................AAGGACTTATTGTAA---GTATGC------ACTTCG..............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TACGGAAA-A--CCCGT--TTCAATTGCAT............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................A-----TG-AAGAATCTCACAACG-------------------------------------------------AAC..........................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CA-C--------------AAA-AG---AAAATCAAGA.............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TACATTTTTAGATATTAGTCA-----TG-AAGA.........................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TTT---------------------------------TTT---AATGC--TAAATGTGCAATAGT......................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TTTT---------------------------------TTT---AATGC--TAAATGTGC............................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................CA-----TG-AAGAATCTCACAACG-------------------------------------------------AAC..........................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTTAAAGA----G-ACA-C--------------TGAAGA----AA-ACAAGAATCTATTTTGTAAGCACTTATTGTAA---TTACGC------ATTTCGATATTTCGAGAGCATAC-AATACATTTTTAGATTATAGTCA-----TG-AAAAATCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCAGT--TTCAATTGCATTTTGAGCA-AAAA-----GTGTACAAAGTTTT-AAGC-TTT---------------------------------TTT---AATGC--TAAATGTGCAATAGTAAGTTAATCATT-AGCCTCGAGTATCTA--------CAGAA----TAAG-TTTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................TGAGCA-AAAA-----GTGTACAA..................................................................................................................................1811.0010001000
..................................GAAGA----AA-ACAAGAATCTATTTTGT..................................................................................................................................................................................................................................................................................................................................................2411.0010000100
droYak3
CTAAAAGA----G-ACA-C--------------TAAAGA---AAAAAAAACAATCTATTTTGTAAGGACTTATTGTAA---TTACGC------ATTTCGATATTTCGAAAGC-----AATACATTTTTAGATTATAGTCA-----TG-AAAAATCTCACAACG-------------------------------------------------AACTACGGAAA-A--CCAGT--TTCAATTGCATTCTGAGCA-AAAA-----GTGTACAAAGTTTT-AAGC-TTT---------------------------------TTT---AATGC--TAAATGTGCAATAGTAAGTTAATTATT-AGCCTCAAATATCTA--------CAGAA----TAAG-TTTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................ATT-AGCCTCAAATATCTA--------CAGA..............2211.00101000000000
..........................................................................GTAA---TTACGC------ATTTCGATATTTCG......................................................................................................................................................................................................................................................................................................2411.00101000000000
droEug1
CTAAAAAG----GTAAA-T--------------GGAAAG---AATCAC---AATCTATTTTGTAAGGACTTATTGTAA---GTGCGC------ATTTCGATATTTCGAGAGCCTAC-TGTACAT-TTTAGATTATAATCA-----TG-AAAAATCTCACAACG-------------------------------------------------AACTACGAAAA-AAGCCAGC--TTCAATTGCATTCTGGAAA-AAAA-----GTGTACAAAGTTTA-AAGC-TT------------------------------------T---TATGC--AAAATGTGCAATATTATGTTTATTATT-AGCTTCGAATAACTA--------CGGAA----TAAG-TTGGSizeHit CountTotal NormTotal
No Reads
droBia1
CTAGATGG----G-AAA-C--------------GGAAAG---AAACACATAAATCTATTTTGTAAGGACTTATTGTAA---GTGCGT------ATTTCGATATTTCGAGAGCCTAG-CGTAC-TTTTTAGATTTTAACCA-----AG-GAAAATCTCACAACG-------------------------------------------------AACTACAAACA-A--CAAGC--TTCAATTGCATTCCGGGCA--AAA-----GTGTACAAAGTTTT-GAGC-AAT---------------------------------TTT---TTTGC--GAAATGTGCAAT-----GTTAGTTTTT-AGCTTCGAATATCT-------------------AAG-TTGGSizeHit CountTotal NormTotal
No Reads
droTak1
CTAGAAGG----G-AAA-C--------------GGATGA---AAACACGAGAATCTATTTTGTAAGGACTTATTGTAA---GTACGC------ATCTCGATATTTCGAGTGCCTAC-CGTACTTTTTTAGATTATAGCCA-----AT-GAAAATCTCACAACG-------------------------------------------------AACTACAGAAAAAAAACAG-------------------GCA-AAAA-----GTGTACAAAGTTTT-AGGC-TTC---------------------------------TTT---TATGC--TAAATGTGCAATATTATGTTAGTTATT-AGCTTCGAATATCTA--------TGAAA----TAAG-TTGGSizeHit CountTotal NormTotal
No Reads
droEle1
CTAGAAGG----G-AAA-C--------------GAAAAG---AAACACAAAAATCTATTTTGTAAGGACTTATTGTAT---GTAAGC------TTTTCGATATATCGAGAGC-TAT-TGTAC-TTTTTAGATCATAATCA-----AG-GAAAATCTCACAACGA------------------------------------------------AACTATGGAAA-AA-CCAG-----CAAATGCATTCTGGGCA-AAAA-----GTGTACAAAGTTTT-AAGC-TTC---------------------------------TTT---TATGA--CAAACGTGCAATATTTATTTAATTATT-AGCTTCGAATATCTA---------GAAC----TAAG-TTGGSizeHit CountTotal NormTotal
No Reads
droRho1
CTAGAAGG----A-AAA-C--------------GAAAAG---AAACACAAGAATCTATTTTGTAAGGACTTATTGTAT---GTAAGC-------TTTCGATATATCGAAAGC-TAC-TGTAC-TTTTTAGATTATAATCA-----AG-AAACATCTCACAACG-------------------------------------------------AACTATGGAAA-AAACCAGC--TTCAATTGCATTCTGAGCA-AAAA-----GTGTACAAAGTTTT-AAGC-TTC---------------------------------TTT---TACGA--TAAACGTGCAATATTTTGTTAATTATT-AGCTTCGAATATCTA--------AGGAA----TAAG-TTGGSizeHit CountTotal NormTotal
No Reads
droFic1
CGAA--GG----G-AAA-C--------------TGAAAG---AAACACAAGAATCTATTTTGTAAGGACTTATTGTAA---GTACGC------ATTTCGATATTTCGAAGGCATAC-TGTAGTTTTTTAGATTATAATCA-----CG-GAAAATCTCACAACG-------------------------------------------------AACTACGGAAA-AG-ACAGC--T-----TGCAGTCTTGTCC-AAAA-----GTGTACAAAGTTTT-AAGC-TTC---------------------------------TTA---AATGC--TAAACGTGCAATATTAATTTAATTATT-AGCTTCGAATATCTA--------CGGAA----TAAG-TTGGSizeHit CountTotal NormTotal
No Reads
droKik1
CTAAAAGG----G-AAT-C--------------TGAA------CACAAAAGAATCTATTTTGTAAGGACTTATTGTATGATGTAAGCATCGATATTTTGATATTTCGAGAGCCCATGTGTAC-TTTTTAGAGTGTAATCA-----AGGAATAATCTCACAACG-------------------------------------------------AACTGCT----------------------GCATACTTAATA-CAAATTCTTATGTACAAAGTTTT-TGGC-------------------------------------------------------GTGCAATATTAAGTTAATTATCCTGCTTCGAATATCTA--------TGGAA----TAAGTTTGGSizeHit CountTotal NormTotal
No Reads
droAna3
CTCACTAGTGTGG-AAATC--------------GAAAAA---GAATGCATGAATCTATTTTGTAAGGACTTATTGTAC---GTACGT------ATTTCGATATTTCGAGAACTTGC-TATACGTTTTTCAATAATCCACG-----CC-AGAAACCGCACAACG-------------------------------------------------AACTACAGAAA----CCCGC--TTC---------TCGAAAA-CAAA-----ATGTACAAACATTTAATGC-TTT---------------------------------TTT---TATGC--TGAACGTGCAATACTAAGTTAATTATT-AGCTTCGAATATTTACATAAATACGGAA----TAAG-TTGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................AACTACAGAAA----CCCGC--TTC---------TC.........................................................................................................................................................2111.001010000
..................................................................................................................................ATAATCCACG-----CC-AGAAACCGC....................................................................................................................................................................................................................................................2111.001010000
droBip1
CTCAAGTG----G-AAA-T--------------CGAAAA---AGATACATGAATCTATTTTGTAAGGACTTATTGTAC---GTACGT------ATTTCGATATTTCGAGAATTTGC-TATACGTTTTTCAATAATCCACG-----CC-AGAAATCTCACAACG-------------------------------------------------AACTACAGAAA----CCCGC--TT----------CTC-GAA-AAAA-----ATGTACAAACATTTTAAGC-TTC---------------------------------TTT---TATGC--TAAACGTGCAATACTAAGTTAATTATT-AGCTTTGAATATTTACATAAATACGAAA----TAAG-TTGGSizeHit CountTotal NormTotal
No Reads
dp5
AAAGCTGGTAAAG-AAA-----CAACACTCG---------------ACAAAAATGTATTTTGTAAAAACATATTGTAT---GT----------ATTTCGATATTTCGAGAGCCTAC-TGTACTTTTTTAGAT---AATCA-----AG-AAACCTG-----------------------------------------------CTGCACAACGAA-------AA----CCCGCTCTTCAAATGCATTCCCCTCAAAAAA-----GTGTACAAAGTTTTAAAAC-TTT---------------------------------TTT---TACGC--TAAATAAGCAATATTTTGTTAATTTTT-AGCTTCGAATATCTA--------TTGGA----TAAG-TTGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................TTCGATATTTCGAGAGCCTAC-TGTAC.......................................................................................................................................................................................................................................................................................2612.0020000000200
......................................................................................................................................................................................................................................................................................................................................................................T-AGCTTCGAATATCTA--------TTGG..............2011.0010000001000
...................................................................................................ATATTTCGAGAGCCTAC-TGTACTT.....................................................................................................................................................................................................................................................................................2411.0010100000000
.........................CACTCG---------------ACAAAAATGTATTTT....................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................TTTTTAGAT---AATCA-----AG-AAACCTG-----------------------------------------------C......................................................................................................................................................................................................2411.0010000100000
...................................................................................................ATATTTCGAGAGCCTAC-TGTA........................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
AAAGCTGGTAAAG-AAA-----CAACACTCG---------------ACAAAAATGTATTTTGTAAAAACATATTGTAT---GT----------ATTTCGATATTTCGAGTGCCTAC-TGAACTTTTTTAGATA---TTCA-----AG-AAACCTG-----------------------------------------------CTGCACAACGAA-------AA----CCCGCTCTTCAAATGCATTCCCCTCAAAAAA-----GTGTACAAAGTTTTAAAAC-TTT---------------------------------TTT---TACGC--TAAATAAGCAATATTTTGTTAATTTTT-AGCTTCGAATATCTA--------TTGGA----TAAG-TTGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATTTACTTTATAA-GAA-----TAACTT-----------------------------------------TAACTCTAA---ATGTAA------A--------TTTCCG-------------------------------------GG-ATAAACCAGGCAACG-------------------------------------------------AATTTTAGC---A--CAGGC--TTTAATTCCCCAACAAACAAAAAA-----TTGTATAAAGTTTT-AT---------------------------------------TCC---AA------TAATGTGCAATATTAAGTTTATCA-----------------------------AT----TAGC-TTGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CTCAAAAA----T-TAA-A--------------AAA-AA---AAAAATAATAATCTATTTTGTAATAACTTAC-------------C------ACTTGTATATTTCGAGGAGGTA------C-TTTTTA--------CCA--AA-AG-AAAAACTGCGCAACG-------------------------------------------------AACG--------A--GCCGC--TTCAATTGTAACCCA---T-AAAA-----TTGTACAAAGTTTTTAATC-TTAATTTAATTGG-AATGCACTGTAGA---GTGCCATTT---TATAT--AAAACGTGTAATAT-----TATTTATA-AGCTTTGAATATAAT--------TTTAATAATTATT-TTCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................ATTGG-AATGCACTGTAGA---GTG.....................................................................................2112.002000000000200000000000000000000000000000000000000000000000000000
....................................................................................................................................................AAAAACTGCGCAACG-------------------------------------------------AACG--------A--G.............................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................................................................................................................................................................................ATTGG-AATGCACTGTAGA---GTGCC...................................................................................2311.001000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................CCA--AA-AG-AAAAACTGCGCAAC...............................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................A--------CCA--AA-AG-AAAAACTGCGCAAC...............................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................AAA-----TTGTACAAAGTTTTTAATA-......................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................CTGCGCAACG-------------------------------------------------AACG--------A--GCCGC--TTCAA..................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................AAAACTGCGCAACG-------------------------------------------------AACG--------A--GC............................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TA--------CCA--AA-AG-AAAAACTGCGCAACG-------------------------------------------------A............................................................................................................................................................................................2511.001000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TATA-AGCTTTGAATATAAT--------TT................2111.001000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................ACTGTAGA---GTGCCATTT---TA..........................................................................1911.001000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GTAGA---GTGCCATTT---TATAT--AA...................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................AAACTGCGCAACG-------------------------------------------------AACG--------A--GCC...........................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
..................................................................................................................................................................................................................................................................................................AATTGG-AATGCACTGTAGA---GT......................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AATAT-----TATTTATA-AGC......................................1640.251000000000000000000000000000000000000000000000000000000000010000
droMoj3
TCAAATGA----T-GGG-C--------------TGGAATATTTAATGAATATGTCTATTTTTTAATAACTTACC-------------------ACTTGTATATTTCGAGGAGGTA------C-TTTTTA--------CCACAAATTG-AA---------AGCAAAACTAAGAAATG-----------ATGAAAAAAAGAAAACTGCGCAACTATCG--------A--TCCAC--TTAAATTGCAAGTCA--TA-AAAT-----GTGTACAAAGTTCATTAAC-TGAAATTAATTGATTAAGCACTCTCAATTAGT-ACATTT---GATACAAGAAACGTGTAATAT-----TATTTATA-AGCTTCGTATATTTA--------TATAA----TG---ATAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................CATTT---GATACAAGAAACGTGTAAT.........................................................2411.001000001
............................................ATGAATATGTCTATTTGG...................................................................................................................................................................................................................................................................................................................................................18200.051001000
droGri2
TGAAAAAA----A-AAT-CATAAAAAACTCAGCAGACATA------TAATATCTCTATTTTGTAATAACTTAC-------------C------ACTTGTATATTTCGAGAGGGTA------C-TTTTTA--------CCA--AAGTG-AAAAATATCAAAACAT-----AAAAAGAACATTTAAAAAACAAAAATCCGAAAACTACGCATCGAACG--------T--GCAGC--TTCAAATGCATTCCAC-AA-ATAA-----TTGTACAAAGTTTTTAAGC-TTAA--------------------------------TTT---TTTAA--AAGAC----------TTGTTTATTGTA-AGCTTTGAAT-------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................AAACTACGCATCGAACG--------T--GCAGC--TTC....................................................................................................................................................................2611.00101
....................................................................................................................................................................................................................AACG--------T--GCAGC--TTCAAATGCATTCCAC-A.....................................................................................................................................................2711.00110

Generated: 05/19/2015 at 11:35 AM