ID:

dsi_7445

 Coordinate:

3l:16235271-16235420 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.0 -17.0 -17.0 -17.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGCACGCTGCAATCCCACCGTGGGTCTCAACATATTCACCGAGCATAACGGTAAGTTCCTGCAAGTGTTGAAAAACGGGCATGCCAAGTACACAGAGCAAAAAGCATATTTTCCAAATTGCAATGCCTTGTTAAGTCAAATTAAACGAAAAACGTCTGTATATAGTGCACGCTCTATCAAAATCGTTTATTTTAAATTAGGTGTGCACTAAAATTTTGTTTTCTATTCGAAGTTAGAAGTGGTTTGATCA
**************************************************.....((.....(((((.(((.....((((.(((...(((.(((((((((...((((...............)))).)))).......................))))).)))...))).))))........)))..)))))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
................................................................................................................................................................................................................................AGTAGAAGTTTGAAGTGGTTTG.... 22 3 1 1.00 1 0 1 0 0
..............................................................................................................................................................TATATAGTGCACGCTC............................................................................ 16 0 1 1.00 1 1 0 0 0
.................................................................TGTTGAAAACCGGACATGGC..................................................................................................................................................................... 20 3 3 0.67 2 2 0 0 0
.................................................................TGTTGAAAACCGGACATGGCA.................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0
..............................................................................................................................................................................TATCCCAATCGTTTATTTTATATT.................................................... 24 3 4 0.25 1 0 0 1 0
................................................................................................................................................................................TCAAAGTCGTTTCTTTTAAATA.................................................... 22 3 4 0.25 1 0 0 0 1
.......................................................TTCCTGTAAGCTTTGAAAAAC.............................................................................................................................................................................. 21 3 6 0.17 1 0 0 1 0
..................................................................GTTGAAAACCGGACATGGCA.................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0
........................................................................................................................................................CGACTGTCTATAGTGCA................................................................................. 17 2 16 0.06 1 0 0 1 0
..................................................................GTTGAAAACCGGACATGGC..................................................................................................................................................................... 19 3 19 0.05 1 1 0 0 0
........................................................................................................................................................CGACTGTCTATAGTGC.................................................................................. 16 2 20 0.05 1 0 0 1 0

Anti-sense strand reads

ACGTGCGACGTTAGGGTGGCACCCAGAGTTGTATAAGTGGCTCGTATTGCCATTCAAGGACGTTCACAACTTTTTGCCCGTACGGTTCATGTGTCTCGTTTTTCGTATAAAAGGTTTAACGTTACGGAACAATTCAGTTTAATTTGCTTTTTGCAGACATATATCACGTGCGAGATAGTTTTAGCAAATAAAATTTAATCCACACGTGATTTTAAAACAAAAGATAAGCTTCAATCTTCACCAAACTAGT
**************************************************.....((.....(((((.(((.....((((.(((...(((.(((((((((...((((...............)))).)))).......................))))).)))...))).))))........)))..)))))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
........................................CTCGTATTGCCATTCAAGGAC............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................ATGTCAGGTGCGAGATGGT....................................................................... 19 3 6 0.17 1 0 0 0 1 0
...CGAGACGTTAGGGTGGCACG................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0 0
...........................GTTGTATAAGTGGCT................................................................................................................................................................................................................ 15 0 6 0.17 1 0 0 1 0 0
............................TTGCATAAGTGGCTC............................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 1

Generated: 04/24/2015 at 03:15 AM