ID:

dsi_7405

Coordinate:

x:16664547-16664696 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [x_16664430_16664546_+]; exon [x_16664430_16664546_+]; intron [x_16664547_16668023_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTGTTTTATGAATCAATTAGGGCGAGCGGAGCTGCAAAATTATCGAGTAGGTAAGTGAAAGTCGCCGCAGTACAGTGAAAACGGCGGGAAATTCGAAACGCAAGCGGTCGAACGTTGAAAATGTGAAATAGACCAACGCCCAAGTGAATAGGCCACGAAAAAGGAGCCACCAATAAAAGGCAGAAGTGGCAAAAGAGAGCAAAAAGTATCTAACGAATGTGTGAGCGACTCTTACTCTTGGTGTGCCTGT
**************************************************.....((((..((.((((.((.........)).))))))..))))...(((..((((((..(((((...)))))......))))...))....))).....(((((.........(((..........)))....)))))..........**************************************************
Read size # Mismatch Hit Count Total Norm Total M053
female body
M025
embryo
M023
head
SRR618934
dsim w501 ovaries
GSM343915
embryo
M024
male body
SRR553488
RT_0-2 hours eggs
SRR902009
testis
SRR553486
Makindu_3 day-old ovaries
................TTAGGGCGAGCGGAGCTGC....................................................................................................................................................................................................................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CGACTCTTACTCTTGGTG....... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0
..GTTTTATGAATCAATTAGGGCG.................................................................................................................................................................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........GAATCAATTAGGGCGAGCGGAGCT......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................GAGCGACTCTTACTC............. 15 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...............ATTAGGGCGAGCGGAGCT......................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............AATTAGGGCGAGCGGAGCTGC....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................TTAGGGCGAGCGGAGCTGCAAAAT.................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............TCAATTAGGGCGAGCGGAGCT......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...........ATCAATTAGGGCGAGCGGAGCT......................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................GCAAAATTATCGAGTAGTGAT.................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0
..............AATTAGGGCGAGCGGAGCTGCAAAAT.................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................AAGGAGCCTCCAATGAAAG....................................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................AACGAATGTGTGAGCGACTCT.................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...TTTTATGAATCAATTAGGGCGAGCGG............................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AACGAGTGTGTGAGCGACTC................... 20 1 1 1.00 1 0 0 0 0 0 0 0 1 0
................................TGCAAAATTATCGAGTAGTGAT.................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
......................CGAGCGGAGCTGCAAAATTATC.............................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............TCAATTAGGGCGAGCGGAGCTGCA...................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................GAGTAGGTAAGGGAA............................................................................................................................................................................................... 15 1 6 0.67 4 0 0 0 4 0 0 0 0 0
..........................CGTAGCTGAAAAATTCTCGA............................................................................................................................................................................................................ 20 3 6 0.33 2 0 2 0 0 0 0 0 0 0
....................................................AAGTGAAAGTCGCCA....................................................................................................................................................................................... 15 1 20 0.25 5 0 0 0 0 0 0 0 0 5
.........................................................................................................................................................................................GGGGCGAAAGAGAACAAAAAG............................................ 21 3 17 0.06 1 0 0 0 0 0 0 0 0 1
.....................................................................GTACGGTTTAAACGGCGG................................................................................................................................................................... 18 3 17 0.06 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CACAAAATACTTAGTTAATCCCGCTCGCCTCGACGTTTTAATAGCTCATCCATTCACTTTCAGCGGCGTCATGTCACTTTTGCCGCCCTTTAAGCTTTGCGTTCGCCAGCTTGCAACTTTTACACTTTATCTGGTTGCGGGTTCACTTATCCGGTGCTTTTTCCTCGGTGGTTATTTTCCGTCTTCACCGTTTTCTCTCGTTTTTCATAGATTGCTTACACACTCGCTGAGAATGAGAACCACACGGACA
**************************************************.....((((..((.((((.((.........)).))))))..))))...(((..((((((..(((((...)))))......))))...))....))).....(((((.........(((..........)))....)))))..........**************************************************
Read size # Mismatch Hit Count Total Norm Total M023
head
SRR553488
RT_0-2 hours eggs
SRR553487
NRT_0-2 hours eggs
SRR902009
testis
........................................................................................................GCCAGCTTGCAACTTTTA................................................................................................................................ 18 0 1 3.00 3 3 0 0 0
...................................................................GTCATGTCACTTTTGCCG..................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
.......................................................................................................CGCCAGCTTGCAACTTTTA................................................................................................................................ 19 0 1 1.00 1 1 0 0 0
...............................................................................TTGGCGCCCCTCAAGCTTTG....................................................................................................................................................... 20 3 5 0.20 1 0 1 0 0
..............................................................................................................................TTAGCTGGTTGCGGG............................................................................................................. 15 1 11 0.09 1 0 0 1 0
.............................................................................TTTTGCGGCCCTATTAGCTT......................................................................................................................................................... 20 3 17 0.06 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:16664497-16664746 + dsi_7405 GTG---------TTTTATGAATCAATTAGGGCGA-GCGGAGCTGCAAAATTATCGAGTAGGTAAGTGAAAGTCGCC------GCAGTACAG------------TGAAAACGGCGGG----------AAATTCGAAACGCAAGCG----GTCGAACGTTGAAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GC----------AAAAAGTATCTAACGAAT----------GTGTGAGC-----------G-AC----TCT------------------------TACTCTTGGTGTGCC--TGT
droSec2 scaffold_17:1394116-1394367 + GTG---------TTTTATGAATCAATTAGGGCGA-GCGGAGCTGCAAAATTATCGAGTAGGTAAGTGAAAGTCGCC------GCAGTACAG------------TGAAAACGGCGGG----------AAATTCGAAACGCAAGCG----GTCGAACGTTGAAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GC----------AAAAAGTATCTAACGAAT----------ATGTGAGC-----------G-AC----TCT------------------------TACTCTTGGTGTGCCTGTGT
dm3 chrX:17551521-17551767 + GTG---------TTTTATGAATCAATTAGGGCGA-GCGGAGCTGCAAAATTATCGAGTAGGTAAGTGAAAGTCGCC------GCAGTGCAG------------TAAAAACGGCGCG----------AAATTCGAAACGCAAGCG----GTCGAACGGGGAAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GC----------AAAAAGTATCTAACGAAT----------GTGTGAGC-----------G-AC----TCT------------------------TACTCTTGGTGTGCC-----
droEre2 scaffold_4690:7888027-7888255 + GTG---------TTTTATGAATCAATTAGGGCGA-TCGGAGCTGCAAAATTATCGAGTAGGTAAGTGAAAGTCGCC------GCAGTGCAG------------TGAAAACGGCGCG----------AAATGCGAATTGCAAGCG----ATTGAACGGGGAAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GC----------AAAAAGTATCTTACT-----------------------------------------------------------------------CTTGGTGCA--TGTGT
droYak3 X:16178917-16179145 + GTG---------TTTTATGAATCAATTAGGGCGA-GCGGAGCTGCAAAATTATCGAGTAGGTAAGTGAAAGTCGCC------GCAGTGCAG------------TGAAAACGGCGCG----------AAATGCGAATTGCAAGCG----GTCAAACGGGGAAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------ACAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GC----------AAAAAGTATCTTACTC-----------------------------------------------------------------------TTGCTGTGC--GAGT
droEug1 scf7180000409271:621402-621631 + GTG---------TTTTATGAATCAATTAGGGCGA-GTGGAGCTGCAAAATTATCGAGTAGGTAAGTGAAAGTAGCC------GCAGTGCAG------------TGAAAAGGGCGCG----------AAAAGCCAAACG-AAGCG----GCCAAA-----AATA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GC----------AAAAAGTATCTAACGAAT----------ATATTT----------------------------------------------------ATGGGTG----TGTTT
droBia1 scf7180000301760:3570327-3570513 + GTG---------TTTTATGAATCAATTAGGGCGA-GTGGAGCTGCAATATTGTCGAGTAGGTAAGTGAGGGACGCC------GCAGTGCAG------------TGAAAACGGCGGGTACGGGCGGCGGACG----------------------A-----GAAA----------------TGT-G---AATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAA---------------------------------------------------------------G-------------------------------------------------------------AG----TGCAAAAGTATCTAATGGAT----------GCGTGTGT------------------------------------------------------GTG----TGCGA
droTak1 scf7180000415210:469034-469258 - GTG---------TTTTGTGAATCAATTAGGGCGG-ACGGAGCTGCAAAATTGTCGAGTAGGTAAGTGAAGATCGCC------GCAGTGCAG------------TGGAAACGGCGCG----------AAG-----------AGCG----GCCGAAAGG----TG----------------TGT-G--AAATA----GACCAACGCCCAAG-TG------------GCCA-CG------GA--------------AAAGGAGCC-----ACCA--------------GCGAACGAAACGAACGGC---AGAAGTGGCAAA-GAGA----------------------------------GGA-----------------GCTGAG----TGCAAAAGTATCTAGCGGAT----------GTGTG----------------------------------------------------------------TGTGT
droEle1 scf7180000491277:563668-563893 + GTG---------TTTTATGAATCAATTAGGGCGA-GTGGATCAGCAAAATTATCGAGTAGGTAAGTGAAAGCCGCC------GCAGTGCAG------------TGAAAACGGCGCG----------AAAAGCCTGCCG-AAGCG----GCCAAA-----AAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GCGGAG----TGTAAAAGTATCTAACGAAT----------GTGA------------------------------------------------------------------GTGT
droRho1 scf7180000779980:96005-96231 + GTG---------TTTTATGAATCAATTAGGGCAA-GCGGAGCAGCAAAATTATCAAGTAGGTAAGTGAAAGACGCC------GCAGTGCAG------------TGAAAACGGCGCG----------AAAAGTCAGCCG-AAGCG----GCCAAA-----AAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GCGGAG----TGCAAAAGTATCTAACGAAT----------GTGAGAGT-----------G------------------------------------------------------
droFic1 scf7180000453926:161606-161825 - GTG---------TTTTATGAATCAATTAGGGCGA-GCAGATCTGCAAAATTATCGAGTAGGTAAGTGGAAGACGCC------GCAGTGCAG------------TGAAAACGGCGCG----------AAAAGCGAGCCG-AAGCG----GCCAGA-----AAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGCC---AGAAGTGGCAAAAGAGA------------------------------------------------------GCGGAG----TGCAAAAGTATCTAACGATT----------GC------------------------------------------------------------------------
droKik1 scf7180000302586:254964-255192 - ACG---------TTTTATGACTCGATTAGCGCAA-AT---TCTGCAAAATTAAACAGTAGGTAAGTGCAAGTCGCC------GTCGTGTAGTGTCTAACGATGTGAAAAGGCCGCG----------AAA------------------------AGGCGGAAAA-------A--GTGTG-TGTGGATTAATA----GACCAACGCCCAAGGAGTCCCGT------TCCGCAGAGCAAGCAGCAAAAACCGAAAA---------------AAA--------------G---------------CGAGAAGAAGCAGCAGCAGCGC----------------------------------TGA----GCGA------GCGGCGAAG----TGCAAAA-------------------------------------------------------------------------------------------------
droAna3 scaffold_13117:509440-509618 - GTG---------TTTTATGAATCGATTGGGGCGA-GCGGAGAGCCAAAATTATCCAGTAGGTAAGTGC--------------GCTGTGC-----------------AAAGCCC--C----------CAATTC-----------------------GCGCAAAA-------A--C-GCT-TGT-G--AAATCGGC-AACCAACGCCCAAG-TACCT-------AGCAC---T------AT--------------AAA-A-AA----------CTCAG----GAGGGG--------------CGAAGAAGAAGCAGCACAAGAGC------------------------------------------------------GG----------A------------------------------------------------------------------------------------------------TGAGA
droBip1 scf7180000396412:444490-444693 - GTG---------TTTTATGAATCGATTGGGGCGA-GCGGAGAACCAAAATTATCCAGTAGGTAAGTGCGAT--------------GTGCAA------------TGC-----CCC-C----------CAGTTC-----------------------GCGCAAAA-------A--C-GCT-TGT-G--AAATCGGC-AACCAACGCCCAAG-TGTAT-------CTGGTA-CT------AA--------------AAAAA-AA----------CTCAG----GAGGGG--------------CAACGAAGAAGCAGCATAAGAGC----------------------------------GGA------------TG-----AGAG----TGCAAATGTATCTCAGA-AT----------G-------------------------------------------------------------------------
dp5 XL_group1a:1528616-1528868 + GTG---------TTTTATGAATCAATTAGGGCAA-ACGGAACTGAAAAATTATCGAGTAGGTAAGTGAGAGTTGC-------GAAACGCAG------------TGAAAATGCCGAA----------ATA------------------------ACGCTGAAAA----------C-GGTCGGT-A--AAACA----GACCAACGCCCTAG-TGC--TGTG-CT-----TCCTACCTCAGCTCTATCTCTTCTAC---------------CTTTTCAGAAGAGAGTGGC---------AGAAAGT---AGAAGCAGCAGAGTATA------------------------------------------------------AA----------AAAAAGTATCTCAGATATTGA------AATGTGGGCCAGATCAGAGTGGAC---------------------------------------------------
droPer2 scaffold_53:273700-273952 - GTG---------TTTTATGAATCAATTAGGGCAA-ACGGAACTGAAAAATTATCGAGTAGGTAAGTGAGAGTTGC-------GAAACGCAG------------TGAAAATGCCGAA----------AT------------------------AACGATGAAAA----------C-TGTCGGT-A--AAACA----GACCAACGCCCTAG-TGC--TGTG-CT-----TCCTACCTCAGCTCTATCTCTTCTAC---------------CTTTTCAGAAGAGAGTGGC---------AGAAAGT---AGAAGCAGCAGAGTATA------------------------------------------------------AA----------AAAAAGTATCTCAGATATTGA------AATGTGGGCCAGATCAGAGTGGAC---------------------------------------------------
droWil2 scf2_1100000004590:2116622-2116870 + GTATATTGTTTTTTTTATGAATCAATTAGGGCAAAACAGAACTGCGAAATTCTCGAGTAGGTAAGTGAC-------------G----------------------CAAACGGAGTA----------AAAATCGAGTTCAAATCG----GTCG----------------------------GT-G--AAATAGTAAGACCAACGCCCAAGGTGTGT-GTGTGTGTGCAA-TG------AA--------------T-----------------------------------------------GT-------GT-----G--TGA-------------------------------------AGATGATGATGACA-----AGAG----CGTAAAAGTATCTCAGAAATCGAAATGAAAATGTGGGACAGATCAG------T----------------------TCAGTAACTTGAATTTGGTCTACG-----
droVir3 scaffold_13042:3087372-3087652 - GTGTA-------TTTTATGAATCAATTAGGGAAA-ATTGAACAGCAAGTTTGCCGAGTAGGTAAGTGAAAGTTGCC------ACAGTGCAG------------TGCAAATAG---------GCGCTAAATGAAAAA-------------TCAAAT---------------------GTCGGA-A--AAATA----GACCAACGCCCCAG-AGCCCAGT------GCCG-AG------TG--------------CCGAGTGCCTAATTCCCA--------------GT---------GACA------AGAAGCAGCAGAAGTGT--------------------------------------------------------GGAG----TGAAAAAGTATCTCAAAGTA-GA-----GAATGTGGGCCAC---A--GTTGACGCAGTGTTACTTTAGGCGCTATTAAATAACTGATATATAATC------CAT
droMoj3 scaffold_6328:579328-579645 + GTGTA-------TTTTATGAATCAATTAGGGAAA-ATTGAACAGCAAGTTTGCCGAGTAGGTAAGTGAAAGTTTCTATCAGTGCAGTGCAA------------TGCAAACAG---------GCGGCAAATATAAAAAATCAAATGTCGGAAAGA-----AGCA----------------TAA-A--AAATA----GACCAACGCCCCAG-TAG----------TGCTA-AG------TG--------------CCGTGTGCC-----TCTA--------------GT---------GAGACGA---AGAAGCAGCAGCAGTAATAGTAGTATTGGTAGTATTTGTAGTTGTAGTAGCTGA------------GG-----AGTC----GGAAAAAGTATCTCAAAG-TCGA------AATGTGGGCCAA------TTGGATGCAGTGT---------------TAAATAACTGATATATAATC----CATGT
droGri2 scaffold_15081:3152763-3153043 + GTG---------TTTTATGAATCAATTCGAGAAA-ATTGAACAGTAAGTTTGTCGAGTAGGTAAGTGAAAGTTGCC--CAAAAAAGTGCAG------------TGAAAACAG---------GCGGCAAACGCAAAA-----ACG----A----A-----AAAATATCAAAAATT-CGTCGG--G--AAATA----GACCAACGCCCAGT-AGTC-AGT----CGT--ACCGAACAAGTACCTTACACCAGTGC---------------CTA--------------GT---------GACAAGA---AGAAG---ACAA--TGA-------------------------------------CGACGACG------ACGACGAAGTGAGCTAAAAAGTATCTCAAAATTCAA------AAAGTGGGCCAG-TCA----------------------------------------------GTTGAGTCAGTCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTG---------TTTTATGAATCAATTAGGGCGA-GCGGAGCTGCAAAATTATCGAGTAGGTAAGTGAAAGTCGCC------GCAGTACAG------------TGAAAACGGCGGG----------AAATTCGAAACGCAAGCG----GTCGAACGTTGAAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GC----------AAAAAGTATCTAACGAAT----------GTGTGAGC-----------G-AC----TCT------------------------TACTCTTGGTGTGCC--TGTSizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
.........................TTAGGGCGA-GCGGAGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------G-AC----TCT------------------------TACTCTTGGTG.........1812.00220000000000000000
..G---------TTTTATGAATCAATTAGGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200020000000000000
..................GAATCAATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GAGC-----------G-AC----TCT------------------------TACTC...............1511.00100000000010000000
........................ATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.......................AATTAGGGCGA-GCGGAGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.........................TTAGGGCGA-GCGGAGCTGCAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
.....................TCAATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
....................ATCAATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.......................AATTAGGGCGA-GCGGAGCTGCAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AACGAAT----------GTGTGAGC-----------G-AC----TCT------------------------....................2111.00110000000000000000
............TTTTATGAATCAATTAGGGCGA-GCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
...............................CGA-GCGGAGCTGCAAAATTATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.....................TCAATTAGGGCGA-GCGGAGCTGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
..............................................................AAGTGAAAGTCGCC------A........................................................................................................................................................................................................................................................................................................................................................................................................................15200.25500000005000000000
droSec2
GTG---------TTTTATGAATCAATTAGGGCGA-GCGGAGCTGCAAAATTATCGAGTAGGTAAGTGAAAGTCGCC------GCAGTACAG------------TGAAAACGGCGGG----------AAATTCGAAACGCAAGCG----GTCGAACGTTGAAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GC----------AAAAAGTATCTAACGAAT----------ATGTGAGC-----------G-AC----TCT------------------------TACTCTTGGTGTGCCTGTGTSizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
...................................................ATCGAGTAGGTAAGTGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.......................AATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................CTAACGAAT----------ATGTGAGC-----------G-AC----TCT------------------------TACT................2711.0011000
..............TTATGAATCAATTAGGGCGA-GCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
...............TATGAATCAATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
........................ATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
GTG---------TTTTATGAATCAATTAGGGCGA-GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
......................................................GAGTAGGTAAGTGAAAGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
.........................................CTGCAAAATTATCGAGTAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
......................CAATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.......................AATTAGGGCGA-GCGGAGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
...................AATCAATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
................ATGAATCAATTAGGGCGA-GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.............TTTATGAATCAATTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
................................GA-GCGGAGCTGCAAAATTATCGAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.............TTTATGAATCAATTAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010010
dm3
GTG---------TTTTATGAATCAATTAGGGCGA-GCGGAGCTGCAAAATTATCGAGTAGGTAAGTGAAAGTCGCC------GCAGTGCAG------------TAAAAACGGCGCG----------AAATTCGAAACGCAAGCG----GTCGAACGGGGAAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GC----------AAAAAGTATCTAACGAAT----------GTGTGAGC-----------G-AC----TCT------------------------TACTCTTGGTGTGCC-----SizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
.......................AATTAGGGCGA-GCGGAGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................21118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000072305000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000001000000000000000000000000000000
.......................AATTAGGGCGA-GCGGAGCTGCAAAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATTAGGGCGA-GCGGAGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000001000010000000
....................ATCAATTAGGGCGA-GCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GCGGAGCTGCAAAATTATCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AATTAGGGCGA-GCGGAGCTGCAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AATTAGGGCGA-GCGGAGCTGCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
......................CAATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGGGCGA-GCGGAGCTGCAAAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTAGGGCGA-GCGGAGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
...................................GCGGAGCTGCAAAATTATCGAGTAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................G----GTCGAACGGGGAAAA----------------TG......................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.......................................AGCTGCAAAATTATCGAGTAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAT----------GTGTGAGC-----------G-AC----TCT------------------------TACT................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................TCAATTAGGGCGA-GCGGAGCTGCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................GGAGCC-----ACCA--------------AT---------AAAAGGC---AGA......................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................AGTAGGTAAGTGAAAGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-----------G-AC----TCT------------------------TACTCTTGGTGT........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................AG------------TAAAAACGGCGCG----------AA...........................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AAGCG----GTCGAACGGGGAAAA----------------T.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GAGTAGGTAAGTGAAAGTCGCC------G........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.............................................................................................................................................................................................................................................AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAA...............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................A-GCGGAGCTGCAAAATTATCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TAACGAAT----------GTGTGAGC-----------G-AC----TCT------------------------....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GA-GCGGAGCTGCAAAATTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................GGAGCTGCAAAATTATCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CGGAGCTGCAAAATTATCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.................................A-GCGGAGCTGCAAAATTATCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................AAGTGAAAGTCGCC------GCAGTGCAG------------TAAA................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTAGGGCGA-GCGGAGCTGCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AGCTGCAAAATTATCGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATTAGGGCGA-GCGGAGCTGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
GTG---------TTTTATGAATCAATTAGGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GCTGCAAAATTATCGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AAAAGAGA------------------------------------------------------GC----------AAAAAGTA..............................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................CCA-CG------AA--------------AAAGGAGCC-----ACCA--------------..............................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................ATCAATTAGGGCGA-GCGGAGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................ATGAATCAATTAGGGCGA-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................GCAAAATTATCGAGTAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................ATCAATTAGGGCGA-GCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................TGAATCAATTAGGGCGA-GCGGAGCTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................ATTAGGGCGA-GCGGAGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............TTTTATGAATCAATTAGGGCGA-GCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GAATCAATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................GCGGAGCTGCAAAATTATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GGGCGA-GCGGAGCTGCAAAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................GTCGAACGGGGAAAA----------------TGT-G--AAA..............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGA-GCGGAGCTGCAAAATTATCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGGGCGA-GCGGAGCTGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATGAATCAATTAGGGCGA-GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..........................................................................................................AAACGGCGCG----------AAATTCGAAAC..................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................AATCAATTAGGGCGA-GCGGAGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................................................................................................................................................................................AGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------G.................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................ATCAATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............TTTATGAATCAATTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................................................................................................................................................AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GC----------A.....................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.........................................................................................................................................................................................................................................................................................................................GCAAAAGAGA------------------------------------------------------GC----------AAAAAGTA..............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TATGAATCAATTAGGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGA-GCGGAGCTGCAAAATTATCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................AAACGCAAGCG----GTCGAAC................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................G----GTCGAACGGGGAAAA----------------TGT-....................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................ATCAATTAGGGCGA-GCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................ATCGAGTAGGTAAGTGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CG----GTCGAACGGGGAAAA----------------TG......................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................AGCG----GTCGAACGGGGATC.........................................................................................................................................................................................................................................................................................................................................1830.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TTTTATGAATCAATTAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................GCG----GTCGAACGGGGATC.........................................................................................................................................................................................................................................................................................................................................1770.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GTG---------TTTTATGAATCAATTAGGGCGA-TCGGAGCTGCAAAATTATCGAGTAGGTAAGTGAAAGTCGCC------GCAGTGCAG------------TGAAAACGGCGCG----------AAATGCGAATTGCAAGCG----ATTGAACGGGGAAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GC----------AAAAAGTATCTTACT-----------------------------------------------------------------------CTTGGTGCA--TGTGTSizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
....................ATCAATTAGGGCGA-TCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.......................AATTAGGGCGA-TCGGAGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
..G---------TTTTATGAATCAATTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
......................................GAGCTGCAAAATTATCGAGTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.................................A-TCGGAGCTGCAAAATTATCGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
..................................................................................GCAGTGCAG------------TGAAAACGGC..........................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
......................CAATTAGGGCGA-TCGGAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
....................ATCAATTAGGGCGA-TCGGAGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCTTACT-----------------------------------------------------------------------CTTGGTGCA--TGTGT2211.0010000010
......................CAATTAGGGCGA-TCGGAGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
..................GAATCAATTAGGGCGA-TCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
....................ATCAATTAGGGCGA-TCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.................TGAATCAATTAGGGCGA-TCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
........................................GCTGCAAAATTATCGAGTAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
droYak3
GTG---------TTTTATGAATCAATTAGGGCGA-GCGGAGCTGCAAAATTATCGAGTAGGTAAGTGAAAGTCGCC------GCAGTGCAG------------TGAAAACGGCGCG----------AAATGCGAATTGCAAGCG----GTCAAACGGGGAAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------ACAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GC----------AAAAAGTATCTTACTC-----------------------------------------------------------------------TTGCTGTGC--GAGTSizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
....................ATCAATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300100020000
....................ATCAATTAGGGCGA-GCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00201000010000
......................CAATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200100010000
...................AATCAATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000020000
.......................AATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200000020000
................................GA-GCGGAGCTGCAAAATTATCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00201000010000
....................ATCAATTAGGGCGA-GCGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200010010000
...............................CGA-GCGGAGCTGCAAAATTATCGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
........................ATTAGGGCGA-GCGGAGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000
.............TTTATGAATCAATTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...................AATCAATTAGGGCGA-GCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...................................GCGGAGCTGCAAAATTATCGAGTAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
......................CAATTAGGGCGA-GCGGAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.........................TTAGGGCGA-GCGGAGCTGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
....................................................................................................................................GAATTGCAAGCG----GTCAAAC................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
..................GAATCAATTAGGGCGA-GCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
....................ATCAATTAGGGCGA-GCGGAGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.....................TCAATTAGGGCGA-GCGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.......................AATTAGGGCGA-GCGGAGCTGCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000
................ATGAATCAATTAGGGCGA-GCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
......................CAATTAGGGCGA-GCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
........................ATTAGGGCGA-GCGGAGCTGCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
................................GA-GCGGAGCTGCAAAATTATCGAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
droEug1
GTG---------TTTTATGAATCAATTAGGGCGA-GTGGAGCTGCAAAATTATCGAGTAGGTAAGTGAAAGTAGCC------GCAGTGCAG------------TGAAAAGGGCGCG----------AAAAGCCAAACG-AAGCG----GCCAAA-----AATA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GC----------AAAAAGTATCTAACGAAT----------ATATTT----------------------------------------------------ATGGGTG----TGTTTSizeHit CountTotal NormTotal
No Reads
droBia1
GTG---------TTTTATGAATCAATTAGGGCGA-GTGGAGCTGCAATATTGTCGAGTAGGTAAGTGAGGGACGCC------GCAGTGCAG------------TGAAAACGGCGGGTACGGGCGGCGGACG----------------------A-----GAAA----------------TGT-G---AATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAA---------------------------------------------------------------G-------------------------------------------------------------AG----TGCAAAAGTATCTAATGGAT----------GCGTGTGT------------------------------------------------------GTG----TGCGASizeHit CountTotal NormTotal
No Reads
droTak1
GTG---------TTTTGTGAATCAATTAGGGCGG-ACGGAGCTGCAAAATTGTCGAGTAGGTAAGTGAAGATCGCC------GCAGTGCAG------------TGGAAACGGCGCG----------AAG-----------AGCG----GCCGAAAGG----TG----------------TGT-G--AAATA----GACCAACGCCCAAG-TG------------GCCA-CG------GA--------------AAAGGAGCC-----ACCA--------------GCGAACGAAACGAACGGC---AGAAGTGGCAAA-GAGA----------------------------------GGA-----------------GCTGAG----TGCAAAAGTATCTAGCGGAT----------GTGTG----------------------------------------------------------------TGTGTSizeHit CountTotal NormTotal
No Reads
droEle1
GTG---------TTTTATGAATCAATTAGGGCGA-GTGGATCAGCAAAATTATCGAGTAGGTAAGTGAAAGCCGCC------GCAGTGCAG------------TGAAAACGGCGCG----------AAAAGCCTGCCG-AAGCG----GCCAAA-----AAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GCGGAG----TGTAAAAGTATCTAACGAAT----------GTGA------------------------------------------------------------------GTGTSizeHit CountTotal NormTotal
No Reads
droRho1
GTG---------TTTTATGAATCAATTAGGGCAA-GCGGAGCAGCAAAATTATCAAGTAGGTAAGTGAAAGACGCC------GCAGTGCAG------------TGAAAACGGCGCG----------AAAAGTCAGCCG-AAGCG----GCCAAA-----AAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGGC---AGAAGTGGCAAAAGAGA------------------------------------------------------GCGGAG----TGCAAAAGTATCTAACGAAT----------GTGAGAGT-----------G------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTG---------TTTTATGAATCAATTAGGGCGA-GCAGATCTGCAAAATTATCGAGTAGGTAAGTGGAAGACGCC------GCAGTGCAG------------TGAAAACGGCGCG----------AAAAGCGAGCCG-AAGCG----GCCAGA-----AAAA----------------TGT-G--AAATA----GACCAACGCCCAAG-TGAAT-------AGGCCA-CG------AA--------------AAAGGAGCC-----ACCA--------------AT---------AAAAGCC---AGAAGTGGCAAAAGAGA------------------------------------------------------GCGGAG----TGCAAAAGTATCTAACGATT----------GC------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ACG---------TTTTATGACTCGATTAGCGCAA-AT---TCTGCAAAATTAAACAGTAGGTAAGTGCAAGTCGCC------GTCGTGTAGTGTCTAACGATGTGAAAAGGCCGCG----------AAA------------------------AGGCGGAAAA-------A--GTGTG-TGTGGATTAATA----GACCAACGCCCAAGGAGTCCCGT------TCCGCAGAGCAAGCAGCAAAAACCGAAAA---------------AAA--------------G---------------CGAGAAGAAGCAGCAGCAGCGC----------------------------------TGA----GCGA------GCGGCGAAG----TGCAAAA-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GTG---------TTTTATGAATCGATTGGGGCGA-GCGGAGAGCCAAAATTATCCAGTAGGTAAGTGC--------------GCTGTGC-----------------AAAGCCC--C----------CAATTC-----------------------GCGCAAAA-------A--C-GCT-TGT-G--AAATCGGC-AACCAACGCCCAAG-TACCT-------AGCAC---T------AT--------------AAA-A-AA----------CTCAG----GAGGGG--------------CGAAGAAGAAGCAGCACAAGAGC------------------------------------------------------GG----------A------------------------------------------------------------------------------------------------TGAGASizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
......................CGATTGGGGCGA-GCGGAGAGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003120000
.......................GATTGGGGCGA-GCGGAGAGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002010010
.......................GATTGGGGCGA-GCGGAGAGCCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...............................................................AGTGC--------------GCTGTGC-----------------AAAGCCC--C----------CAAT.........................................................................................................................................................................................................................................................................................................................................................................2411.001100000
........................ATTGGGGCGA-GCGGAGAGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..................GAATCGATTGGGGCGA-GCGGAGAGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.......................GATTGGGGCGA-GCGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
......................CGATTGGGGCGA-GCGGAGAGCCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.......................GATTGGGGCGA-GCGGAGAGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
..............TTATGAATCGATTGGGGCGA-GCGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
droBip1
GTG---------TTTTATGAATCGATTGGGGCGA-GCGGAGAACCAAAATTATCCAGTAGGTAAGTGCGAT--------------GTGCAA------------TGC-----CCC-C----------CAGTTC-----------------------GCGCAAAA-------A--C-GCT-TGT-G--AAATCGGC-AACCAACGCCCAAG-TGTAT-------CTGGTA-CT------AA--------------AAAAA-AA----------CTCAG----GAGGGG--------------CAACGAAGAAGCAGCATAAGAGC----------------------------------GGA------------TG-----AGAG----TGCAAATGTATCTCAGA-AT----------G-------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
GTG---------TTTTATGAATCAATTAGGGCAA-ACGGAACTGAAAAATTATCGAGTAGGTAAGTGAGAGTTGC-------GAAACGCAG------------TGAAAATGCCGAA----------ATA------------------------ACGCTGAAAA----------C-GGTCGGT-A--AAACA----GACCAACGCCCTAG-TGC--TGTG-CT-----TCCTACCTCAGCTCTATCTCTTCTAC---------------CTTTTCAGAAGAGAGTGGC---------AGAAAGT---AGAAGCAGCAGAGTATA------------------------------------------------------AA----------AAAAAGTATCTCAGATATTGA------AATGTGGGCCAGATCAGAGTGGAC---------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body
M040
Female-body
M059
Embryo
M062
Head
V043
Embryo
V051
Head
V112
Male-body
SRR902010
Ovary
SRR902011
Testis
SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGGCCAGATCAGAGT.......................................................1911.0010100000000
....................ATCAATTAGGGCAA-ACGGAACTGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
............................GGGCAA-ACGGAACTGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
.............TTTATGAATCAATTAGGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGA------AATGTGGGCCAGATCAGA.........................................................2511.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TATTGA------AATGTGGGCCAGATCAGA.........................................................2411.0010000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCAGATATTGA------AATGTGGGCC.................................................................2111.0010100000000
.........................TTAGGGCAA-ACGGAACTGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
...............TATGAATCAATTAGGGCAA-ACGGAACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..............................................................AAGTGAGAGTTGC-------GAAACGC..................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................CTAC---------------CTTTTCAGAAGAGAGTGGC---------...................................................................................................................................................................................................2311.0010010000000
...................................................ATCGAGTAGGTAAGTGAGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............TTTATGAATCAATTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................AA-ACGGAACTGAAAAATTATCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
...................AATCAATTAGGGCAA-ACGGAACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCCAGATCAGAGTGGA....................................................1911.0010000001000
..........................................................................................................................................................................................................................................................................................................................................................................................A----------AAAAAGTATCTCAGATCGC...................................................................................20100.1010100000000
droPer2
GTG---------TTTTATGAATCAATTAGGGCAA-ACGGAACTGAAAAATTATCGAGTAGGTAAGTGAGAGTTGC-------GAAACGCAG------------TGAAAATGCCGAA----------AT------------------------AACGATGAAAA----------C-TGTCGGT-A--AAACA----GACCAACGCCCTAG-TGC--TGTG-CT-----TCCTACCTCAGCTCTATCTCTTCTAC---------------CTTTTCAGAAGAGAGTGGC---------AGAAAGT---AGAAGCAGCAGAGTATA------------------------------------------------------AA----------AAAAAGTATCTCAGATATTGA------AATGTGGGCCAGATCAGAGTGGAC---------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo
M042
Female-body
V042
Embryo
V050
Head
V057
Head
V111
Male-body
.............TTTATGAATCAATTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1916.006600000
................................AA-ACGGAACTGAAAAATTATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.004400000
................................AA-ACGGAACTGAAAAATTATCGAGTAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
..............................GCAA-ACGGAACTGAAAAATTATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
......................CAATTAGGGCAA-ACGGAACTGAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
........................ATTAGGGCAA-ACGGAACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
........................ATTAGGGCAA-ACGGAACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.........................TTAGGGCAA-ACGGAACTGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..G---------TTTTATGAATCAATTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................ATCAATTAGGGCAA-ACGGAACTGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.............TTTATGAATCAATTAGGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..........................TAGGGCAA-ACGGAACTGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................CAATTAGGGCAA-ACGGAACTGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droWil2
GTATATTGTTTTTTTTATGAATCAATTAGGGCAAAACAGAACTGCGAAATTCTCGAGTAGGTAAGTGAC-------------G----------------------CAAACGGAGTA----------AAAATCGAGTTCAAATCG----GTCG----------------------------GT-G--AAATAGTAAGACCAACGCCCAAGGTGTGT-GTGTGTGTGCAA-TG------AA--------------T-----------------------------------------------GT-------GT-----G--TGA-------------------------------------AGATGATGATGACA-----AGAG----CGTAAAAGTATCTCAGAAATCGAAATGAAAATGTGGGACAGATCAG------T----------------------TCAGTAACTTGAATTTGGTCTACG-----SizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
...........................AGGGCAAAACAGAACTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.00440000
...........................AGGGCAAAACAGAACTGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000
.......................AATTAGGGCAAAACAGAACTGCGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200
.............TTTATGAATCAATTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000
..........TTTTTTATGAATCAATTAGGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00201010
..........TTTTTTATGAATCAATTAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.......................AATTAGGGCAAAACAGAACTGCGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
..........................TAGGGCAAAACAGAACTGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.......................AATTAGGGCAAAACAGAACTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
..............TTATGAATCAATTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................AG----CGTAAAAGTATCTCAGA.......................................................................................1911.00100100
.................................AAACAGAACTGCGAAATTCTCGAGTAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAGAAATCGAAATGAAA..........................................................................2111.00100010
........................ATTAGGGCAAAACAGAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
......TGTTTTTTTTATGAATCAATTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
..................................AACAGAACTGCGAAATTCTCGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..............................................................................................................................................................................................................................................A--------------T-----------------------------------------------GT-------GT-----G--TGA-------------------------------------AGATGATGAT.........................................................................................................................2011.00100010
...........TTTTTATGAATCAATTAGGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
......................................................................................................................................................................................................................................G------AA--------------T-----------------------------------------------GT-------GT-----G--TGA-------------------------------------AGATGAT............................................................................................................................1911.00100100
..........TTTTTTATGAATCAATTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
......................................................................................................................................................................................................................................G------AA--------------T-----------------------------------------------GT-------GT-----G--TGA-------------------------------------AGATGATGA..........................................................................................................................2111.00100010
....................................CAGAACTGCGAAATTCTCGAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..................................AACAGAACTGCGAAATTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
................................AAAACAGAACTGCGAAATTCTCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
....ATTGTTTTTTTTATGAATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...............TATGAATCAATTAGGGCAAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.......................................AACTGCGAAATTCTCGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.................................AAACAGAACTGCGAAATTCTCGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
.......GTTTTTTTTATGAATCAATTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
.............................GGCAAAACAGAACTGCGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...........TTTTTATGAATCAATTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
droVir3
GTGTA-------TTTTATGAATCAATTAGGGAAA-ATTGAACAGCAAGTTTGCCGAGTAGGTAAGTGAAAGTTGCC------ACAGTGCAG------------TGCAAATAG---------GCGCTAAATGAAAAA-------------TCAAAT---------------------GTCGGA-A--AAATA----GACCAACGCCCCAG-AGCCCAGT------GCCG-AG------TG--------------CCGAGTGCCTAATTCCCA--------------GT---------GACA------AGAAGCAGCAGAAGTGT--------------------------------------------------------GGAG----TGAAAAAGTATCTCAAAGTA-GA-----GAATGTGGGCCAC---A--GTTGACGCAGTGTTACTTTAGGCGCTATTAAATAACTGATATATAATC------CATSizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
......................................GAACAGCAAGTTTGCCGAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002001000000000000000000010000000000000000000000000000000000000000
.......................................AACAGCAAGTTTGCCGAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................GCAAGTTTGCCGAGTAGGTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.......................................AACAGCAAGTTTGCCGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................AATTAGGGAAA-ATTGAACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................A-ATTGAACAGCAAGTTTGCCGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................GCCCAGT------GCCG-AG------TG--------------CCGAGTGCC.....................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................AG-AGCCCAGT------GCCG-AG------TG--------------C.............................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................AGGGAAA-ATTGAACAGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AGTATCTCAAAGTA-GA-----GAATGTG.....................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................GCCG-AG------TG--------------CCGAGTGCCTAATTCCCA--------------GT---------...................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
........................ATTAGGGAAA-ATTGAACAGCAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................CAGT------GCCG-AG------TG--------------CCGAGTGCC.....................................................................................................................................................................................................................................2120.501000000000000000000000000000000000000000000000000000000000000001
droMoj3
GTGTA-------TTTTATGAATCAATTAGGGAAA-ATTGAACAGCAAGTTTGCCGAGTAGGTAAGTGAAAGTTTCTATCAGTGCAGTGCAA------------TGCAAACAG---------GCGGCAAATATAAAAAATCAAATGTCGGAAAGA-----AGCA----------------TAA-A--AAATA----GACCAACGCCCCAG-TAG----------TGCTA-AG------TG--------------CCGTGTGCC-----TCTA--------------GT---------GAGACGA---AGAAGCAGCAGCAGTAATAGTAGTATTGGTAGTATTTGTAGTTGTAGTAGCTGA------------GG-----AGTC----GGAAAAAGTATCTCAAAG-TCGA------AATGTGGGCCAA------TTGGATGCAGTGT---------------TAAATAACTGATATATAATC----CATGTSizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
.....................................TGAACAGCAAGTTTGCCGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................ATTAGGGAAA-ATTGAACAGCAAGTTTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000010
...................................ATTGAACAGCAAGTTTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................TGTAGTAGCTGA------------GG-----AGTC----........................................................................................................1811.001000010
................................AA-ATTGAACAGCAAGTTTGCCGAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.............TTTATGAATCAATTAGGGAAA-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................ATTGGTAGTATTTGTAGTTGTAGTA........................................................................................................................................2511.001000100
...................................ATTGAACAGCAAGTTTGCCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
GTG---------TTTTATGAATCAATTCGAGAAA-ATTGAACAGTAAGTTTGTCGAGTAGGTAAGTGAAAGTTGCC--CAAAAAAGTGCAG------------TGAAAACAG---------GCGGCAAACGCAAAA-----ACG----A----A-----AAAATATCAAAAATT-CGTCGG--G--AAATA----GACCAACGCCCAGT-AGTC-AGT----CGT--ACCGAACAAGTACCTTACACCAGTGC---------------CTA--------------GT---------GACAAGA---AGAAG---ACAA--TGA-------------------------------------CGACGACG------ACGACGAAGTGAGCTAAAAAGTATCTCAAAATTCAA------AAAGTGGGCCAG-TCA----------------------------------------------GTTGAGTCAGTCASizeHit CountTotal NormTotalM041
Female-body
V109
Male-body
No Reads

Generated: 05/18/2015 at 10:48 AM