ID:

dsi_7402

 Coordinate:

3l:12704376-12704628 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3l_12704629_12705112_-]; CDS [3l_12704629_12705112_-]; CDS [3l_12703839_12704375_-]; exon [3l_12703530_12704375_-]; intron [3l_12704376_12704628_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCCCAGCAACAAGGCTCTGGTGGATAACGCCCAGTACTATTACATTTCGGTGAGTTCTTGGTTTTTGCTTCGATATTTGGGGTAGAATCGATGCCGGAAGTTATAAATTAATGGCGCAAATTAGTTAATAGATTTCTAAAGAGTGGGAGATATGAAATCCATATAAAGTGAAAACTGTTCAGTTCCTTAATTTCACATTAATTTTGTTCTTACCTACCTAACAAATCTTTCCTTAATTTTACTTCTTGTTCTTTAAAACATAAAGATCATATGTATAATACTTTTTTAATTTCATTTCCCAGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATTATGCAGGTGGCGGCCAC
**************************************************((((.((((.((((((((((((((...))))))))))).....))))))).)))).(((((((.......))))))).................(((((((..((((((.....(((.(((((((((....))).......)))))).)))..((((((...........))))))..........(((.(((....((.((((((.....)))))).))...))).))).........))))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR902009
testis
 M023
head
 SRR902008
ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...................................................................................................................................................................................................................................................................................................................TCTTCCTCACTGTGAACCC........................... 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................TCACTGTGAACCCGCCAAGCATTATG.............. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................CTTCTTCCTCACTGTGAACCCGC......................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................CTTCCTCACTGTGAACCCGC......................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................CCTCACTGTGAACCCGCC........................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................ATGACGGAAGCTATGAATTAAT................................................................................................................................................................................................................................................ 22 3 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TCCTCACTGTGAACCCGC......................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................GCATTATGCAGGTGGCGGC... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TCCTCACTGTGAACCCGCCAAGCAT.................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TCCTCACTGTGAACCCGCCAAGCATTA................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TTCTTCCTCACTGTGAACCC........................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................CCTCACTGTGAACCCGCCAAG..................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................GCTTCTTCCTCACTGTGAACC............................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................TCACTGTGAACCCGCCAAGCATTA................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................CTTCTTCCTCACTGTGAACCC........................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................CCAGTACTATTACATTTCGGGCT........................................................................................................................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TCCTCACTGTGAACCCGCC........................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................CAGTACTATGAGAATTCGG.............................................................................................................................................................................................................................................................................................................. 19 3 12 0.25 3 0 0 0 0 0 2 1 0 0 0 0
..................................GTACTATTACATTTCGGGCC........................................................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TGACGGAAGCTATGAATTAAT................................................................................................................................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................TATCCGTAATACTTTTTTAATT............................................................. 22 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................GGTAGAAACGATGCC................................................................................................................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
.....AGCACCACGGCTCTTGTGG......................................................................................................................................................................................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0
.....................................ATATTACATGTCGGTGA........................................................................................................................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0
......GCAGCAAGGCTCTGG............................................................................................................................................................................................................................................................................................................................................ 15 1 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0
...........AAGGCTTTGGTGGAT....................................................................................................................................................................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCGGGTCGTTGTTCCGAGACCACCTATTGCGGGTCATGATAATGTAAAGCCACTCAAGAACCAAAAACGAAGCTATAAACCCCATCTTAGCTACGGCCTTCAATATTTAATTACCGCGTTTAATCAATTATCTAAAGATTTCTCACCCTCTATACTTTAGGTATATTTCACTTTTGACAAGTCAAGGAATTAAAGTGTAATTAAAACAAGAATGGATGGATTGTTTAGAAAGGAATTAAAATGAAGAACAAGAAATTTTGTATTTCTAGTATACATATTATGAAAAAATTAAAGTAAAGGGTCCCGAAGAAGGAGTGACACTTGGGCGGTTCGTAATACGTCCACCGCCGGTG
**************************************************((((.((((.((((((((((((((...))))))))))).....))))))).)))).(((((((.......))))))).................(((((((..((((((.....(((.(((((((((....))).......)))))).)))..((((((...........))))))..........(((.(((....((.((((((.....)))))).))...))).))).........))))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
..........................................................................................................................................................................................................................................................................................................TGGTCCGCAAGAAGGAGTGA................................... 20 3 5 1.40 7 7 0 0 0 0 0
....................................................................................................CAATATGTCATTACCGCGTTA........................................................................................................................................................................................................................................ 21 3 1 1.00 1 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................................TGGTCCGCAAGAAGGAGTGAC.................................. 21 3 3 1.00 3 2 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................GGTCCGCAAGAAGGAGTGAC.................................. 20 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................GGTCCGCAAGAAGGAGTGA................................... 19 2 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................GTCCGCAAGAAGGAGTGAC.................................. 19 2 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................ATGTATTGGCTAGAAAGGAAT..................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0
......CGTTGTGCTGAGACCACCT........................................................................................................................................................................................................................................................................................................................................ 19 2 3 0.33 1 0 0 1 0 0 0
.....TCGTTGTGCTGAGACCACCTC....................................................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0
.....TCGTTGTGCTGAGACCA........................................................................................................................................................................................................................................................................................................................................... 17 2 14 0.29 4 0 0 4 0 0 0
.........................................................................................................................................................................................................................................................................................................AGGGTCCCGAAGACG......................................... 15 1 7 0.29 2 1 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................GTCCGCAAGAAGGAGTGA................................... 18 2 4 0.25 1 1 0 0 0 0 0
............................................................................................................................................................................TCTGATAAGTCAAGGAAT................................................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................GTAGTCCTAGTTTACATATT.......................................................................... 20 3 12 0.25 3 0 0 0 3 0 0
...................................................................................................................................................................................................................................................................GTAGTCCTAGTTTACATATTA......................................................................... 21 3 5 0.20 1 0 0 0 1 0 0
.........................................................................................................................................................................................................................GGTCTGTTTAGAAAGGAATC.................................................................................................................... 20 3 5 0.20 1 0 0 1 0 0 0
.........................GTTGCGGGTCATGACAACGT.................................................................................................................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0
.........................................................................................................................................................................................GGACTTTAAGTGTAATTAA..................................................................................................................................................... 19 2 8 0.13 1 1 0 0 0 0 0
........................................................................................................................................................................................................................TGTATTGGCTAGAAAGGAAT..................................................................................................................... 20 3 10 0.10 1 0 0 0 1 0 0
..................................................................................................................................................................................................................................................................................................AAAGTCAAGGGTCCC................................................ 15 1 20 0.10 2 0 2 0 0 0 0
TCGGGTCGGCGCTCCGAGA.............................................................................................................................................................................................................................................................................................................................................. 19 3 12 0.08 1 0 0 0 1 0 0
.........................................ATGTAAAGCCCCTCA......................................................................................................................................................................................................................................................................................................... 15 1 12 0.08 1 0 1 0 0 0 0
............................GCGAGTCATGATAGTGCAA.................................................................................................................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 1
.........................................................................................................................................................................................GGACTTTAAGTGTAATTA...................................................................................................................................................... 18 2 18 0.06 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TGGTCCGCAAGAAGGAGTG.................................... 19 3 18 0.06 1 0 1 0 0 0 0
..........................................................................................CTACCGCCTGCAATAT....................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0
................................................................................................................................................................................................AAGTGTAATTAAGAC.................................................................................................................................................. 15 1 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TCGGGAGGTTCGTTATACG............. 19 3 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:12704326-12704678 - dsi_7402 AGCCCAGCAACAAGGCTCTGGTGGATAACGCCCAGTACTATTACATTTCGGTGAGTTCTTG---GTTTTTGCTTCGATATTTG-GGGTA-----GAATCGATGCCGGAAGTTAT----AAAT---------TAATGG----CGC-AAAT---------TAGTTA--------------------------------------ATAGATT-----------------------------------------------------------------------TCTAAAGAGTGGG------AGAT-ATGAAATCCATATA-------AAGTGAAAA--CTGTTCAGTTCCTTAATTTCACATTAATTTTGTTCTT-ACCTACCTAA-----CAAATCTTTCCTTAATTTTACTT------------------CTTG------------------------------------------------------------------------------------------------TTCTTTAAAACATAAAGA--TCA-TATGT-ATAATACTTT-TTT---------------------------------------------A-ATTTC-ATTT---CCCAGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATTATGCAGGTGGCGGCCAC
droSec2 scaffold_0:5185462-5185803 - dse_434 AGCCCAGCAACAAGGCTCTGGTGGATAACGCCCAGTACTACTACATTTCGGTGAGTTCTTT---GTTTTTGCTTCGTTATTTG-GGGTA-----GAATCGATGCCGGAAGTTAT----AAAT---------TAATGG----CAC-AAAG---------TAGTTA--------------------------------------ATAGATT-----------------------------------------------------------------------TCTAAAGAGTGGG------AGAT-ATTAAATCCATATA-------ATGTGAAAA--C-----------TTAATTTCACATTAATTTTGTTCTT-ACCTACCTAA-----TAAATCTTTCCTTAATTTTACTT------------------CTTG------------------------------------------------------------------------------------------------TTCTTTAAAACATAAAGA--TCA-TATGT-ATAATACTTC-TTT---------------------------------------------A-ATTTA-ATTT---CCCAGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATTATGCAGGTGGCGGCCAC
dm3 chr3L:13013877-13014223 - AGCCCAGCAACAAGGCTCTGGTGGATAACGCCCAGTACTACTACATTTCGGTGAGTTCTG---------------------------TA-----CAATCGATGCCGGAAGTAAT----AAAT---------TAATGG----CAC-AAAGGGAAGTAAGTAGTTA--------------------------------------AGCGATT-----------------------------------------------------------------------TCTAAAGAGTTAG------AGAG-ATTAA-TC-A--------GAGATATTAA-TCAGAGTTTAGTTCCTTAATTTCACATTAATTTTGTTCTT-ACCTACCTAA-----AAAATCTTTACTTAATTTTACTT------------------C----------------------------------------------------------------------CCT-----------T-GCTTTG-------TTCTTTAAAACATAAAGATATCG-TATGT-ATAATACTTCTTAT---------------------------------------------T-ATTTC-ATTT---CCCAGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATTATGCAGGTGGCGGCCAC
droEre2 scaffold_4784:13021410-13021797 - AGCCCAGCAACAAGGCTCTGGTGGATAACGCCCAGTACTACTACATTTCGGTGAGTACATG---GATTTCTCTTTGAGATCTGGGGGTG-----GATTCGATGCCGAATGTAAT----AACT---------AAATAG----CAC-AACCGGAAGTAAGTTGTTA-------------------------------------TAGCAGTT-----------------------------------------------------------------------GTAAACGAGTGAG------A---------------------------------------------------------------TTTGGTTCTTTGCATACCAAATTACAAATAACTTCACTTATTTTTAAATACTTTTAACTAATGTTAACTTGTTAACTAA--------------------------------AACCGTTTATGTGTACTAACC---ACATATAGGGATACAAA------TTATATGAAATGAGT---ACATAAAGA--TCA-AATGT-ATAATACTTT-ACC---------------------------------------------TATTCCA-TTTT---CCCAGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATCATGCAGGTGGCGGCTAC
droYak3 3L:13093020-13093277 - AGCCCAGCAACAAGGCTCTGGTGGATAACGCCCAGTACTACTACATTTCGGTGAGTACATA---GCTTCTGCTTTGAGATTTGGGGATG-----TAATCGATGCCGGAAGCAAT----AACT---------A-ACTG----CAC-AACGGGAAGTGAGTTGTTA-------------------------------------TAGCGATT-----------------------------------------------------------------------GCAAAAGAGTGAG------AGAT-ATGAA-TCCATATATGTACATATATAAAAG--CTGTCGAGTTCATTAATTGCACATTAGTGTGGTTCTT-ACCTTCCCAA-----AATAACTTTCCTTAATTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409711:6101566-6101697 - TAAAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-----------------------------------------------------------------------TCTA-------------------------------------------------------------------------------------------------------------------ATTAAATGT--------------------AAATTATTTATTAA--------------------------------AACT-----TAAGTACCAATAATCATCCTT-----------T----------------------------------------------------GC-TCT---------------------------------------------G-TTTTA-TCTT---CTTAGGGCTTCTTCCTCACCGTGAACCCACCGAGCATCATGCAGGTGGCGGCCAC
droBia1 scf7180000302193:2254157-2254342 - TGATTTTGTT-----CACTTTTAATAGGTTCCCAAAATAACAATTTT--GGAATTTA-TTT---TTTTTTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTT-ACCTACTGCG-----TAAAT----------------------------------------------------------------------------------------------ATTAATAAACAACAATAGAAATACGAG----------------------------------------------TTATTAATC-TGT---------------------------------------------G-ATCCA-CTTC---CACAGGGCTTCTTCCTCACCGTGAACCCGCCGAGCATCATGCAGGTGGCGGCCAC
droTak1 scf7180000415706:66448-66635 - GATTTTAAAAAACT-----A----------------------------------------------------------------ATATG-----TAATTATAA------------------ATAGAAAG---------TTATTAAGATAACAAGTTC-------------------------------TTATTTGTTTCGTTACTAATT---------------------------------------------------------------------------------------------------------------------------------------------TAAACCCCATTAATACTTTTATA-AC--------------------------------------------------------------------------------------------------------------------------------CGAAATTCAAA----------------------------------------------TGATTA--A-TCT---------------------------------------------G-TTCCA-CTTT---CGCAGGGCTTCTTCTTGACCGTTAACCCGCCGAGCATTATGCAGGTGGCGGCCAC
droEle1 scf7180000491255:1412615-1412944 - AGCCCGGCAACAAGGCTCTGGTGGATAACGCCCAGTACTACTATATTTCGGTGAGTTCAGT---GCTTCTGTTTTGAGCTACA-CCGTA-----GAATCGATGCCGGAAGTAAT----TACT---------ATACCA----GCC-AACGGGAAGTAAGTTATTA-------------------------------------TAGCGATT-----------------------------------------------------------------------GCATACCGAAGTGATTAGGCGGTTATTAGA----------------AGCGGGAA--TTTATGAGTTTCTTGATTGTCAATATATTTGGTT----------------------------------------------------------TGCTTGTTAATTAAGATTCCCTAGCATATTCCTTCTTAACTACTCAAATCAATTAAGTGAACTTG--------------------AT------TAATCTTAAATATGTAAATTATAAAAA--ATA-TTTGTCATAATATTTT-----------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000769477:294-400 + AGCCCGGCAACAAGGCTCTGGTGGAAAACGCCCAATACTACTATATTTCGGTGAGTGCATT---GCCTTTGTTTTGTAATATA-CCATA-----AAATCGATGACGGAAGTAAT----AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454048:723619-723790 + ATCCTGGCAACAAGGCTCTTGTGGAGAATGCCCAGTACTACTATATTTCGGTGAGTGCAGT---GGCTTTGTTTTAAGATAAA-ACGTG-----AAATCGATGGCGGAAATAAT----AACA---------ATATAA----CCC-AACGGAAATAAAGATTTAA-------------------------------------TAGCTGT--------------------------------------------------------------------------ATACCAAAACGATTAGGGGATTATGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302272:667875-667985 - AGCCGGGAAATAAGGCCCTGGTGGATAACGCCCTGTACTACTACATTTCGGTAAGTGGA-----------------------A-CCATA-----GATTCCTAACCGGAAGTAAT----TACT---------TAATGG----------CGGGAAGTGAATTATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:4131789-4131901 + ATCCCGTGAACAAGGCGGTGATAGAGAACGCCCAGTACTACTACATTTCGGTAAGTTAAGT---GCCTAAATTGTAAGTT-CA-GAATG-----GAACCGAAGCCGGAAGTAAT----AACT---------TAATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395450:265399-265787 + AGCCCTTGAACAAGGCGGTGGTAGAGAATGCCCAGTACTACTACATTTCGGTAAGTTAAGT---AGCTAAGTCATGAGTT-CA-GTCTG-----GAGCCGAAGCCGGAAGTAAT----AACT---------TAATGACTTGCTC-GGCGGGAAGTAAGTTATAA-------------------------------------AAGCAATTGAAGCAACTTTTGGAATACCCAAGAATGCGTCTATTCAAGAGCGAAATTTAATCTTTTTATATGATGTATTTTTAA--------------------------------------------------------------------------------------TG-ACTAAGTGGG-----TAAAT----------------------------------------------------------------------------------------------ATTT-TAAATGATATTAGCATT--GAG-----------------------------------TC----------AGTGCATC-AGCGATTGCATTTCTTCAAGCTTATGAAAGTATCTTTTAATAACCGCATGTCTCT-TTCA---TTTAGGGCTTTTTCCTCACCGTCAACCCGCCGAGTATCATGCAGGTGGCAAAAAC
dp5 XR_group6:4377567-4377826 - AGCCCCTCAACAAAGCGCTGGTGGATAATGCTTTGTACTACTATATTTCGGTGAGTACCATATTGTATA-----------TGA-TCATA-----AAATCGATGCAA-TAGTGAT----AAAATAAAAAGCTTTATGACTTGATAAGACAGGAAGTCAATTC----------------------------------CGTCGCACTCAATTGGACCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATC------------------------AGA--TCAATAAAT-AACATAAACC-TTT---------------------------------------------G-ATTGT-ATTTCCCGGCAGGGCTTCTTTCTCACTGTGAACCCGCCCAGCATAATGCAAGTGGCCGCCAC
droPer2 scaffold_9:2666748-2667007 - AGCCCCTCAACAAAGCGCTGGTGGATAATGCTTTGTACTACTATATTTCGGTGAGTACCATATTGTATA-----------TGA-TCATA-----AAATCGATGCAA-TAGTGAT----AAAATAAAAAGCTTTATGACTTGATAAGACAGGAAGTCAATTC----------------------------------CGTCGCACTCAATTGGACCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATC------------------------AGA--TCAATAAAT-AACATAAACC-TTT---------------------------------------------G-ATTGT-ATTTCCCGACAGGGCTTCTTTCTCACTGTGAACCCGCCCAGCATAATGCAAGTGGCCGCCAC
droWil2 scf2_1100000004511:5276375-5276637 + AGCCAGCGAATAAGGCTCTGGTGGATAATGCCAAATACTATTATATATCGGTATGTGACAT---GCAATTGAT------------CATACATTACTATAGATGCAGCAGATCATTATAGATATAAGTAGGACTATGACT----C-ATAG---------TCATTGATGGAGAGATTCATATTACATTTCCAGAACCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCTAATTCATATTGCTT-----------------------------------------------------------------------------------------------------------------------------------TT-----------T----------------------------------------------------CT-TCC---------------------------------------------G-ATCCA-TCAT---GACAGGGCTTCTTTCTCACTGTGAATCCACCGAGTATAATGCATGTGGCGGAAAC
droVir3 scaffold_13049:22491961-22492039 + TAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TT-TGT---------------------------------------------G-ATCTTCTGCA---TGCAGGGCTTCTTTTTGACCGTTAATCCACCCAGCATAATGCGTGTGGCCGCCAC
droMoj3 scaffold_6680:17099547-17099599 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGGCTTCTTCTTGACCGTCAATCCGCCCAGTATAATGCGCGTAGCTGCCAC
droGri2 scaffold_15121:203424-203500 + TAATTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-TTT---------------------------------------------G-ATCTT-TGCA---TGCAGGGCTTCTTCTTGACCGTTAATCCGCCCAGCATAATGCGAGTGGCCGCCAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCCCAGCAACAAGGCTCTGGTGGATAACGCCCAGTACTATTACATTTCGGTGAGTTCTTG---GTTTTTGCTTCGATATTTG-GGGTA-----GAATCGATGCCGGAAGTTAT----AAAT---------TAATGG----CGC-AAAT---------TAGTTA--------------------------------------ATAGATT-----------------------------------------------------------------------TCTAAAGAGTGGG------AGAT-ATGAAATCCATATA-------AAGTGAAAA--CTGTTCAGTTCCTTAATTTCACATTAATTTTGTTCTT-ACCTACCTAA-----CAAATCTTTCCTTAATTTTACTT------------------CTTG------------------------------------------------------------------------------------------------TTCTTTAAAACATAAAGA--TCA-TATGT-ATAATACTTT-TTT---------------------------------------------A-ATTTC-ATTT---CCCAGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATTATGCAGGTGGCGGCCACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCTCACTGTGAACCC...........................1913.00300300000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTGTGAACCCGCCAAGCATTATG..............2612.00200000000000002000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCCTCACTGTGAACCCGC.........................2312.00200200000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTCACTGTGAACCCGC.........................2012.00200200000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACTGTGAACCCGCC........................1811.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCACTGTGAACCCGC.........................1811.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTATGCAGGTGGCGGC...1911.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCACTGTGAACCCGCCAAGCAT..................2511.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCACTGTGAACCCGCCAAGCATTA................2711.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCCTCACTGTGAACCC...........................2011.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACTGTGAACCCGCCAAG.....................2111.00100000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTTCCTCACTGTGAACC............................2111.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTGTGAACCCGCCAAGCATTA................2411.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCCTCACTGTGAACCC...........................2111.00110000000000000000
...............................CCAGTACTATTACATTTCGGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCACTGTGAACCCGCC........................1911.00100100000000000000
..................................GTACTATTACATTTCGGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.20100100000000000000
droSec2
AGCCCAGCAACAAGGCTCTGGTGGATAACGCCCAGTACTACTACATTTCGGTGAGTTCTTT---GTTTTTGCTTCGTTATTTG-GGGTA-----GAATCGATGCCGGAAGTTAT----AAAT---------TAATGG----CAC-AAAG---------TAGTTA--------------------------------------ATAGATT-----------------------------------------------------------------------TCTAAAGAGTGGG------AGAT-ATTAAATCCATATA-------ATGTGAAAA--C-----------TTAATTTCACATTAATTTTGTTCTT-ACCTACCTAA-----TAAATCTTTCCTTAATTTTACTT------------------CTTG------------------------------------------------------------------------------------------------TTCTTTAAAACATAAAGA--TCA-TATGT-ATAATACTTC-TTT---------------------------------------------A-ATTTA-ATTT---CCCAGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATTATGCAGGTGGCGGCCACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTATGCAGGTGGCGGC...1911.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCACTGTGAACCCGCC........................2011.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCCTCACTGTGAACCCGCC........................2411.0010010
dm3
AGCCCAGCAACAAGGCTCTGGTGGATAACGCCCAGTACTACTACATTTCGGTGAGTTCTG---------------------------TA-----CAATCGATGCCGGAAGTAAT----AAAT---------TAATGG----CAC-AAAGGGAAGTAAGTAGTTA--------------------------------------AGCGATT-----------------------------------------------------------------------TCTAAAGAGTTAG------AGAG-ATTAA-TC-A--------GAGATATTAA-TCAGAGTTTAGTTCCTTAATTTCACATTAATTTTGTTCTT-ACCTACCTAA-----AAAATCTTTACTTAATTTTACTT------------------C----------------------------------------------------------------------CCT-----------T-GCTTTG-------TTCTTTAAAACATAAAGATATCG-TATGT-ATAATACTTCTTAT---------------------------------------------T-ATTTC-ATTT---CCCAGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATTATGCAGGTGGCGGCCACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACTGTGAACCCGCCAAGC....................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATTATGCAGGTGGCGGCC..2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCTTCTTCCTCACTGTGA...............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCACTGTGAACCCGCCAAGCAT..................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAACCCGCCAAGCATTATGCAGG..........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTTCCTCACTGTGAA..............................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCATTATGCAGGTGGCGGC...2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
........AACAAGGCTCTGGTGGATAACGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AACAAGGCTCTGGTGGATAACGCCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCTTCCTCACTGTGAACCCGCC........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................GATATTAA-TCAGAGTTTAGTT.......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTGTGAACCCGCCAAGCATTATG..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CTGGTGGATAACGCCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATTATGCAGGTGGCG.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TAACGCCCAGTACTACTACATTTCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACTGTGAACCCGCCAAGC....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TGGTGGATAACGCCCAGTACTACTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATTATGCAGGTGGC......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CAGCAACAAGGCTCTGGTGGATAACGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCACTGTGAACCCGCCAAGCATTATG..............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GCCCAGTACTACTACATTTCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACCCGCCAAGCATT.................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
..........CAAGGCTCTGGTGGATAACGCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGCATTATGCAGGTGGC......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GGCTCTGGTGGATAACGCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACTGTGAACCCGCCAAG.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCACTGTGAACCCGCCAAGCA...................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCCCAGCAACAAGGCTCTGGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCACTGTGAACCCGCCAAGCATTA................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TTA--------------------------------------AGCGATT-----------------------------------------------------------------------TCTAAAGAGTT..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CTGGTGGATAACGCCCAGTAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CTT------------------C----------------------------------------------------------------------CCT-----------T-GCTTTG-------TTCTTTAAA......................................................................................................................................................2311.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTATGCAGGTGGCGGCC..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................CGCCCAGTACTACTACATTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CAGCAACAAGGCTCTGGTGGATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAACCCGCCAAGCATTATGCAGGT.........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-------TTCTTTAAAACATAAAGA.............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TAG------AGAG-ATTAA-TC-A--------GAGATA.........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTGTGAACCCGCCAAGCATTA................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ACAAGGCTCTGGTGGATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGGCTCTGGTGGATAACGCCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCAAGCATTATGCAGGTGGC......2311.0010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGAACCCGCCAAGCA...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAGCATTATGCAGGTGGCGGCT..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGGCTCTGGTGGATAACGCCCAGTACTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAAGGCTCTGGTGGATAACGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTATGCAGGTGGCGGC...1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........AAGGCTCTGGTGGATAACGCCCAGTAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AAGGCTCTGGTGGATAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGCCCAGCAACAAGGCTCTGGTGGATAACGCCCAGTACTACTACATTTCGGTGAGTACATG---GATTTCTCTTTGAGATCTGGGGGTG-----GATTCGATGCCGAATGTAAT----AACT---------AAATAG----CAC-AACCGGAAGTAAGTTGTTA-------------------------------------TAGCAGTT-----------------------------------------------------------------------GTAAACGAGTGAG------A---------------------------------------------------------------TTTGGTTCTTTGCATACCAAATTACAAATAACTTCACTTATTTTTAAATACTTTTAACTAATGTTAACTTGTTAACTAA--------------------------------AACCGTTTATGTGTACTAACC---ACATATAGGGATACAAA------TTATATGAAATGAGT---ACATAAAGA--TCA-AATGT-ATAATACTTT-ACC---------------------------------------------TATTCCA-TTTT---CCCAGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATCATGCAGGTGGCGGCTACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
AGCCCAGCAACAAGGCTCTGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.GCCCAGCAACAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCACTGTGAACCCGCCAA......................2111.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATCATGCAGGTGGTT.....1911.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACTGTGAACCCGCCA.......................1911.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCA-TTTT---CCCAGGGCTTCTTC.........................................2211.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCATCATGCAGGTGGC......1911.0010000100
...............................................................................................................AAT----AACT---------AAATAG----CAC-AACCGGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
..................................................................TTTCTCTTTGAGATCTGGGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACTGTGAACCCGCCAAG.....................2111.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGCATCATGCAGGTGGCGGCTAC2611.0010000010
.........................................................................................................................................................................................................................................................................................TAAACGAGTGAG------A---------------------------------------------------------------TTTGGTTCT.............................................................................................................................................................................................................................................................................................................................2211.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCACTGTGAACCCGCCA.......................2111.0011000000
...................................................................TTCTCTTTGAGATCTGGGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACTGTGAACCCGCCAAGC....................2211.0011000000
droYak3
AGCCCAGCAACAAGGCTCTGGTGGATAACGCCCAGTACTACTACATTTCGGTGAGTACATA---GCTTCTGCTTTGAGATTTGGGGATG-----TAATCGATGCCGGAAGCAAT----AACT---------A-ACTG----CAC-AACGGGAAGTGAGTTGTTA-------------------------------------TAGCGATT-----------------------------------------------------------------------GCAAAAGAGTGAG------AGAT-ATGAA-TCCATATATGTACATATATAAAAG--CTGTCGAGTTCATTAATTGCACATTAGTGTGGTTCTT-ACCTTCCCAA-----AATAACTTTCCTTAATTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....AGCAACAAGGCTCTGGTGGATAACGCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
.GCCCAGCAACAAGGCTCTGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.............................GCCCAGTACTACTACATTTCGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.............................GCCCAGTACTACTACATTTCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
droEug1
TAAAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-----------------------------------------------------------------------TCTA-------------------------------------------------------------------------------------------------------------------ATTAAATGT--------------------AAATTATTTATTAA--------------------------------AACT-----TAAGTACCAATAATCATCCTT-----------T----------------------------------------------------GC-TCT---------------------------------------------G-TTTTA-TCTT---CTTAGGGCTTCTTCCTCACCGTGAACCCACCGAGCATCATGCAGGTGGCGGCCACSizeHit CountTotal NormTotal
No Reads
droBia1
TGATTTTGTT-----CACTTTTAATAGGTTCCCAAAATAACAATTTT--GGAATTTA-TTT---TTTTTTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTT-ACCTACTGCG-----TAAAT----------------------------------------------------------------------------------------------ATTAATAAACAACAATAGAAATACGAG----------------------------------------------TTATTAATC-TGT---------------------------------------------G-ATCCA-CTTC---CACAGGGCTTCTTCCTCACCGTGAACCCGCCGAGCATCATGCAGGTGGCGGCCACSizeHit CountTotal NormTotal
No Reads
droTak1
GATTTTAAAAAACT-----A----------------------------------------------------------------ATATG-----TAATTATAA------------------ATAGAAAG---------TTATTAAGATAACAAGTTC-------------------------------TTATTTGTTTCGTTACTAATT---------------------------------------------------------------------------------------------------------------------------------------------TAAACCCCATTAATACTTTTATA-AC--------------------------------------------------------------------------------------------------------------------------------CGAAATTCAAA----------------------------------------------TGATTA--A-TCT---------------------------------------------G-TTCCA-CTTT---CGCAGGGCTTCTTCTTGACCGTTAACCCGCCGAGCATTATGCAGGTGGCGGCCACSizeHit CountTotal NormTotal
No Reads
droEle1
AGCCCGGCAACAAGGCTCTGGTGGATAACGCCCAGTACTACTATATTTCGGTGAGTTCAGT---GCTTCTGTTTTGAGCTACA-CCGTA-----GAATCGATGCCGGAAGTAAT----TACT---------ATACCA----GCC-AACGGGAAGTAAGTTATTA-------------------------------------TAGCGATT-----------------------------------------------------------------------GCATACCGAAGTGATTAGGCGGTTATTAGA----------------AGCGGGAA--TTTATGAGTTTCTTGATTGTCAATATATTTGGTT----------------------------------------------------------TGCTTGTTAATTAAGATTCCCTAGCATATTCCTTCTTAACTACTCAAATCAATTAAGTGAACTTG--------------------AT------TAATCTTAAATATGTAAATTATAAAAA--ATA-TTTGTCATAATATTTT-----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGCCCGGCAACAAGGCTCTGGTGGAAAACGCCCAATACTACTATATTTCGGTGAGTGCATT---GCCTTTGTTTTGTAATATA-CCATA-----AAATCGATGACGGAAGTAAT----AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATCCTGGCAACAAGGCTCTTGTGGAGAATGCCCAGTACTACTATATTTCGGTGAGTGCAGT---GGCTTTGTTTTAAGATAAA-ACGTG-----AAATCGATGGCGGAAATAAT----AACA---------ATATAA----CCC-AACGGAAATAAAGATTTAA-------------------------------------TAGCTGT--------------------------------------------------------------------------ATACCAAAACGATTAGGGGATTATGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AGCCGGGAAATAAGGCCCTGGTGGATAACGCCCTGTACTACTACATTTCGGTAAGTGGA-----------------------A-CCATA-----GATTCCTAACCGGAAGTAAT----TACT---------TAATGG----------CGGGAAGTGAATTATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
ATCCCGTGAACAAGGCGGTGATAGAGAACGCCCAGTACTACTACATTTCGGTAAGTTAAGT---GCCTAAATTGTAAGTT-CA-GAATG-----GAACCGAAGCCGGAAGTAAT----AACT---------TAATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......GAACAAGGCGGTGATAGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002020000
..................................GTACTACTACATTTCGGTAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...................GATAGAGAACGCCCAGTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
...................GATAGAGAACGCCCAGTACTACTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.......GAACAAGGCGGTGATAGAGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
droBip1
AGCCCTTGAACAAGGCGGTGGTAGAGAATGCCCAGTACTACTACATTTCGGTAAGTTAAGT---AGCTAAGTCATGAGTT-CA-GTCTG-----GAGCCGAAGCCGGAAGTAAT----AACT---------TAATGACTTGCTC-GGCGGGAAGTAAGTTATAA-------------------------------------AAGCAATTGAAGCAACTTTTGGAATACCCAAGAATGCGTCTATTCAAGAGCGAAATTTAATCTTTTTATATGATGTATTTTTAA--------------------------------------------------------------------------------------TG-ACTAAGTGGG-----TAAAT----------------------------------------------------------------------------------------------ATTT-TAAATGATATTAGCATT--GAG-----------------------------------TC----------AGTGCATC-AGCGATTGCATTTCTTCAAGCTTATGAAAGTATCTTTTAATAACCGCATGTCTCT-TTCA---TTTAGGGCTTTTTCCTCACCGTCAACCCGCCGAGTATCATGCAGGTGGCAAAAACSizeHit CountTotal NormTotal
No Reads
dp5
AGCCCCTCAACAAAGCGCTGGTGGATAATGCTTTGTACTACTATATTTCGGTGAGTACCATATTGTATA-----------TGA-TCATA-----AAATCGATGCAA-TAGTGAT----AAAATAAAAAGCTTTATGACTTGATAAGACAGGAAGTCAATTC----------------------------------CGTCGCACTCAATTGGACCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATC------------------------AGA--TCAATAAAT-AACATAAACC-TTT---------------------------------------------G-ATTGT-ATTTCCCGGCAGGGCTTCTTTCTCACTGTGAACCCGCCCAGCATAATGCAAGTGGCCGCCACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGTGAACCCGCCCAGC....................1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TTT---------------------------------------------G-ATTGT-ATTTCCCGGCA...................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTCTCACTGTGAACCCG..........................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTCACTGTGAACCCGCCCAGC....................2511.0010100000000
............AAGCGCTGGTGGATAATGCTTTGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTCACTGTGAACCCGCC........................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCATAATGCAAGTGGCC.....2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-AACATAAACC-TTT---------------------------------------------G-ATTGT-..............................................................2111.0010100000000
.............................................................................................................................................................ATTC----------------------------------CGTCGCACTCAATTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGGCAGGGCTTCTTTCTCA.....................................2211.0010000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCTCACTGTGAACCCG..........................2011.0010100000000
..............GCGCTGGTGGATAATGCTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACTGTGAACCCGCCCA......................2111.0010100000000
droPer2
AGCCCCTCAACAAAGCGCTGGTGGATAATGCTTTGTACTACTATATTTCGGTGAGTACCATATTGTATA-----------TGA-TCATA-----AAATCGATGCAA-TAGTGAT----AAAATAAAAAGCTTTATGACTTGATAAGACAGGAAGTCAATTC----------------------------------CGTCGCACTCAATTGGACCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATC------------------------AGA--TCAATAAAT-AACATAAACC-TTT---------------------------------------------G-ATTGT-ATTTCCCGACAGGGCTTCTTTCTCACTGTGAACCCGCCCAGCATAATGCAAGTGGCCGCCACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTCTCACTGTGAACC............................1913.003300000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGTGAACCCGCCCAG.....................1811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCACTGTGAACCCGCCCAGCAT..................2411.001010000
................................................................................................ATCGATGCAA-TAGTGAT----AAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
...................................................................................................................................................................................................CGTCGCACTCAATTGGACCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGCATAATGCAAGTGGCC.....2111.001000010
droWil2
AGCCAGCGAATAAGGCTCTGGTGGATAATGCCAAATACTATTATATATCGGTATGTGACAT---GCAATTGAT------------CATACATTACTATAGATGCAGCAGATCATTATAGATATAAGTAGGACTATGACT----C-ATAG---------TCATTGATGGAGAGATTCATATTACATTTCCAGAACCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCTAATTCATATTGCTT-----------------------------------------------------------------------------------------------------------------------------------TT-----------T----------------------------------------------------CT-TCC---------------------------------------------G-ATCCA-TCAT---GACAGGGCTTCTTTCTCACTGTGAATCCACCGAGTATAATGCATGTGGCGGAAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................TT-----------------------------------------------------------------------------------------------------------------------------------TT-----------T----------------------------------------------------CT-TCC---------------------------------------------G-ATCCA-TCAT---GAC....................................................2311.00110000
................................................................................................................................................................................................................................................................................................................................................................................CTT-----------------------------------------------------------------------------------------------------------------------------------TT-----------T----------------------------------------------------CT-TCC---------------------------------------------G-ATCCA-TCAT---GACAG..................................................2611.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------T----------------------------------------------------CT-TCC---------------------------------------------G-ATCCA-TCAT---GACAG..................................................2311.00110000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGTGAATCCACCGAGT....................1911.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACCGAGTATAATGCATGTGG.......2411.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTATAATGCATGTGGCGGAAAC2511.00100100
droVir3
TAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TT-TGT---------------------------------------------G-ATCTTCTGCA---TGCAGGGCTTCTTTTTGACCGTTAATCCACCCAGCATAATGCGTGTGGCCGCCACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGACCGTTAATCCACCCAGC....................2311.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGGCTTCTTCTTGACCGTCAATCCGCCCAGTATAATGCGCGTAGCTGCCACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TAATTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-TTT---------------------------------------------G-ATCTT-TGCA---TGCAGGGCTTCTTCTTGACCGTTAATCCGCCCAGCATAATGCGAGTGGCCGCCACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCTTCTTGACCGTTAATCCG..........................2411.00110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGACCGTTAATCCGCC........................2111.00110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTTAATCCGCCCAGCATAAT...............2311.00110

Generated: 05/18/2015 at 11:43 AM