ID:

dsi_7388

 Coordinate:

3r:4174660-4174809 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-4.3 -3.8 -3.7 -3.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AATCCTTAAATGCACCACTATATTGGCCATGACAAATTAACACTACGGACATAACCAATTTTCTGGCGAACTGCAAGTGTCCTCCTTTCCATTCTATTTGACCAAATATATAATATGCTATACTCAATCAAGCACACACATCTTCTGAAATTTGAGTACTTTAGTACTGCAAACATTTGCTTTCAACCAAAATGATTTTCCCAACTTAAACATTATTAATAACTCGTCAGCGAATGAGATGAGTTGATAT
***********************************************************((......((..((...((((.................((((.....((((........)))).....)))))))).))..)).....))***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902009
testis
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
......................................................................................................................................................................................................................ATTAATAACTCGTCAGCGAATGA............. 23 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0
...................................ATTAACACTACGGACATAACC.................................................................................................................................................................................................. 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AATAACTCGTCAGCGAATGA............. 20 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
..........................................CTACGGACATAACCAATTTTCTGGCG...................................................................................................................................................................................... 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATAACTCGTCAGCGAATGA............. 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TAACTCGTCAGCGAATGAGATGAGT...... 25 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
...........................................TACGGACATAACCAATTTTCTGGCGAAC................................................................................................................................................................................... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCGTCAGCGAATGAGATGAGTTGATA. 26 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0
.........................................ACTACGGACATAACCAATTTTCTGG........................................................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........................................CTACGGACATAACCAATTTTCTGGCGA..................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
................................CAAATTAACACTACGGAC........................................................................................................................................................................................................ 18 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0
............................................................................................................................CAATCAAGCACACACATCTTCTGAA..................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................ACACTACGGACATAACCAATTTTCTGGC....................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AACTCGTCAGCGAATGAGATGAGT...... 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...........................................................TTTCTGGCGAACTGCAAGTGTCCT....................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................AATTAACACTACGGACATAACCAAT............................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
..............................GACAAATTAACACTACGGAC........................................................................................................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCGTCAGCGAATGAGATGAGTTGA... 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTTCCCAACTTAAACATTATTAATAACTC......................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CAAGCACACACATCTTCTGAA..................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................TAACTCGTCAGCGAATGAG............ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TGCTATACTCAATCAAGCACACACATCT........................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................ACGGACATAACCAATTTTCTGGC....................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................TACGGACATAACCAATTTTCT.......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................ACTACGGACATAACCAATTTTCTGGC....................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................TGACAAATTAACACTACGGACATAACC.................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATTATTAATAACTCGTCAGCGAATGA............. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTATTAATAACTCGTCAGCGAAAGAGA........... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................CGAACTGCAAGTGTCCTC...................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................TACGGACATAACCAATTTTCTGGC....................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................CAAATTAACACTACGGACATAACC.................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATTATTAATAACTCGTCAGCGG................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................ACACTACGGACATAACCAAT............................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CACACATCTTCTGAAATTTGAGT............................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTCAGCGAATGAGATGAGTT..... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................CTACGGACATAACCAATTTTCT.......................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................TTGGCCATGACAAATTAACACTACGGAC........................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................ATTAACACTACGGACATAACCG................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................TGACAAATTAACACTACGGACATAACCA................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
........................GGCCATGACAAATTAACAC............................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
.............................................CGGACATAACCAATTTTCTGGCGAAC................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................ACTCGTCAGCGAATGAGATGAGT...... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTTGCTTTCAACCAAAATGATTTTCCC................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................ACGGACATAACCAATTTTCT.......................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................ATATTGGCCATGACAAATT.................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................CTACGGACATAACCAATTTTCTGGC....................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................AACACTACGGACATAACCAA................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TTAAACATTATTAATAACTCGTCAGCGG................. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................TTCTGGCGAACTGCAAGTGTCCTCC..................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................ATTATTAATAACTCGTCAGCGAATGG............. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTAATAACTCGTCAGCGA................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTAAACATTATTAATAACTCGTCAGC................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................CCATGACAAATTAACACTACGGACATAA.................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................TACTCAATCAAGCACACACATCTTC......................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTAAACATTATTAATAACTCGTCAGCGA................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................CACTACGGACATAACCAATTTTCTGGCGA..................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
............................................................TTCTGGCGAACTGCAAGTGTCC........................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................CAAATTAACACTACGGACA....................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................GCAAGTGTCCTCCTTTCCATTCTA.......................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................AACACTACGGACATAACC.................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................CATGACAAATTAACACTACGGACATA..................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................ATATAATATGCTATACTCAAT.......................................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................AGACTCAGCTTCTGAAATTTG................................................................................................ 21 3 4 0.50 2 0 0 0 0 0 0 0 0 0 2 0
.......................................................................................................................................................................TACAAACATTTGCATTCGACCAAAATGA....................................................... 28 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................TCTTCGGAAATTTGAG.............................................................................................. 16 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................TCAGGGAACGAGATGA........ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TTAGGAATTTACGTGGTGATATAACCGGTACTGTTTAATTGTGATGCCTGTATTGGTTAAAAGACCGCTTGACGTTCACAGGAGGAAAGGTAAGATAAACTGGTTTATATATTATACGATATGAGTTAGTTCGTGTGTGTAGAAGACTTTAAACTCATGAAATCATGACGTTTGTAAACGAAAGTTGGTTTTACTAAAAGGGTTGAATTTGTAATAATTATTGAGCAGTCGCTTACTCTACTCAACTATA
*****************************************************************************************************((......((..((...((((.................((((.....((((........)))).....)))))))).))..)).....))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
........................................................................................................................AGGAGTTGGTTCGTGTATG............................................................................................................... 19 3 20 0.10 2 1 1 0 0
.....................................................................................................................................TCTGAGTCGAAGACTTTAAA................................................................................................. 20 3 12 0.08 1 0 0 1 0
........................................GTGAGGCCTGGATTGG.................................................................................................................................................................................................. 16 2 17 0.06 1 1 0 0 0
................................................................CCGCTTGACGTTCTC........................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1
..............................................................................................................................................................................................TTACTAAAAGGGGTG............................................. 15 1 20 0.05 1 1 0 0 0
.....................................................TAGTTAAAAGACTGCTT.................................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................AAGTTGGGTTTACTCAA.................................................... 17 2 20 0.05 1 0 1 0 0

Generated: 04/23/2015 at 09:58 PM