ID:

dsi_7367

Coordinate:

3l:16219888-16220037 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TATTTTGTTTGTAAAAGTTTGTTTCTTTGTTTTGAGCCTCTTCGGTCTGCCATTGTAGTTCATCGCATTTGCCGCCCATCGTCATTAGATGATAAGATGAAAAACTGCCTGCTCTATCCATAGATACTACCAGATTACTAGTTGGCCAGTTGACAACCTGCCTCTCACCCAAAATCTTTCTGTTTCTTTCGTTTCTGCAGGTACCAAGCACAGCTCTTTTCGCGGCCATCCAGGCAAATATCACATGAAC ************************************************....((((((((((((....)).....((((((....))))))..)))))...)))))((((.........(((.((....(((((.......(((..(((...)))..)))..........)))))....)).))).........))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	GSM343915 embryo
..............................................................TGGCATTTTCCGCACATCGTCAT.....................................................................................................................................................................	23	3	1	2.00	2	2	0	0	0	0	0	0	0	0
.........................................................................................TGATATGATGAAAAACT................................................................................................................................................	17	1	2	1.50	3	0	1	1	0	0	0	1	0	0
.......................................CTTCGGTCTGCCATTGTAGTTCATCGCATT.....................................................................................................................................................................................	30	0	1	1.00	1	0	0	1	0	0	0	0	0	0
............................................................................................TAAAACGAAAAACTGCCTGCTCT.......................................................................................................................................	23	2	1	1.00	1	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................AGCACAGCTCTTTTCGCGGCC.......................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0
..................................................................................................................................CAGATTAGTAGTTGG.........................................................................................................	15	1	5	1.00	5	0	5	0	0	0	0	0	0	0
..............................................................TGGCATTTTCCGCACATCGTCA......................................................................................................................................................................	22	3	3	0.67	2	0	0	0	0	0	2	0	0	0
..............................................................TGGCATTTTCCGCACATCGTC.......................................................................................................................................................................	21	3	7	0.29	2	0	1	0	0	0	0	0	1	0
....................................................................................................................................................GTTGACAAGCTGCCTC......................................................................................	16	1	6	0.17	1	0	0	0	0	0	0	1	0	0
...........................................CGTCTGCCCTTGTATTTCAT...........................................................................................................................................................................................	20	3	8	0.13	1	0	0	0	0	0	0	0	0	1
...............................................................GGCATTTTCCGCACATCGTCA......................................................................................................................................................................	21	3	10	0.10	1	0	0	0	0	0	1	0	0	0
.....................................................................................TAGATGATTATATGAAAA...................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	1	0	0
.....................................................GGTAGATCATCGCATT.....................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1	0

Anti-sense strand reads

ATAAAACAAACATTTTCAAACAAAGAAACAAAACTCGGAGAAGCCAGACGGTAACATCAAGTAGCGTAAACGGCGGGTAGCAGTAATCTACTATTCTACTTTTTGACGGACGAGATAGGTATCTATGATGGTCTAATGATCAACCGGTCAACTGTTGGACGGAGAGTGGGTTTTAGAAAGACAAAGAAAGCAAAGACGTCCATGGTTCGTGTCGAGAAAAGCGCCGGTAGGTCCGTTTATAGTGTACTTG ************************************************....((((((((((((....)).....((((((....))))))..)))))...)))))((((.........(((.((....(((((.......(((..(((...)))..)))..........)))))....)).))).........))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.................................CTCTGAGAAGCCAGA..........................................................................................................................................................................................................	15	1	5	0.40	2	2	0	0	0	0
............................................................................................................................ATGATGGTCTCGTGATCA............................................................................................................	18	2	3	0.33	1	1	0	0	0	0
....................................................................................................ATTTGACGGGCTAGATAGG...................................................................................................................................	19	3	19	0.11	2	0	2	0	0	0
........................................................................................................................................................................................................CATGATTCCTGTCGAG..................................	16	2	15	0.07	1	0	0	1	0	0
................................................................................................................................................................................................................................CGGGAGGTCCGTTTA...........	15	1	16	0.06	1	1	0	0	0	0
.........................................................................................................ACGGACGAGATTGGTGACT..............................................................................................................................	19	3	16	0.06	1	1	0	0	0	0
.....................................................................................................................................................................GTGGGTTTCAGACAGAC....................................................................	17	2	19	0.05	1	0	0	0	1	0
...............................................................................................................................ATGCGCTAATGATCA............................................................................................................	15	2	20	0.05	1	0	0	0	0	1

Generated: 04/24/2015 at 03:14 AM