| droSim2 | 
	3r:25609519-25609768 + | 
	dsi_7354 | 
	TACATTTATGTAGT---------------------------------------------------------------------------GA-----ATTTTGTTTTCA-TGATG-------CACAT--------------------------------TTA-AG-TGGGGTAATTAAACTGAAACGAAACGCAAATTAGTTGTCAGCTCATAA-------AAATCAAGGTA---AGGTAGTTATA-GCCAG--------GTC---------ATCATTTAATGCCCAATCGTTATTTAAA--AAT--------------------------------------------------------------CTAAGTGAA-CTTTA-----------AGCATATATAACA---TGTACATTATCCACTTTTTAGGCCACCTTTCCCTATGAGTGGCAGCCAAAGATTGTCTCGGATCAGCTACT | 
	| droSec2 | 
	scaffold_4:5114635-5114884 + | 
	 | 
	TACATTTATGTAGT---------------------------------------------------------------------------GG-----ATTTTGTTTTCA-TGATG-------CACAT--------------------------------TTA-AG-TGGGGTAATTTAACTGAAACGAAACGCAAATTAGTTGTCAGCTCATAT-------AAATCAAGGTA---AGATAGTTATA-GACAG--------GTC---------ATCATTTAATGCCCAATCGTTATTTAAA--AAT--------------------------------------------------------------CGAAGTGCA-CTTTA-----------AGCATATCTAACA---TGTATATTATCCACTTTTTAGGCCACCTTTCCCTATGAGTGGCAGCCAAAGATTGTCTCGGATCAGCTACT | 
	| dm3 | 
	chr3R:26290222-26290478 + | 
	 | 
	TAAATTTATGTAGT---------------------------------------------------------------------------GG-----ATTTTGTTTTTA-TAATG-------CACAT--------------------------------TTA-AG-TGGGGTAATTAAACTGAAACGTTACGCAAATTAGTTGTCAGCTCATAA-------AAATCAAGGTA---AGGTAGTTATA-GCCAGGCTATAG-GTC---------ATCACTTAATGCGCAACTGTTATTTAAA--AAT--------------------------------------------------------------CTAAGTGCA-CTTTA-----------AGCATATCTAACA---TGTACATTATCCATATTTAAGGCCACCTTTCCCTATGAGTGGCAGCCAAAGATTGTCTCGGATCAGCTACT | 
	| droEre2 | 
	scaffold_4820:1719106-1719304 - | 
	 | 
	TACATT--------------------------------------------------------------------------------------------------------------------ACAT--------------------------------TTA-AA-TGG-GTAATTAA-------------GCAGATTAGTTGTCAAGTCATAG-------AAGTGAAGGCG---AGGTAGTTTCAGGCCAGGTTATAGGTCC-----------TATTTAATGCCCTGC------------------------------------------------------------------------------CTAAGTGCA-CCTAA-----------AGCATATCCATTA---CCTCCT--CTCACATCCATAGGCCACCTTTCCGTATGAGTGGCAGCCAAAGATCGTCTCGGACCAGCTGCT | 
	| droYak3 | 
	3R:27208954-27209179 + | 
	 | 
	TACATCTATGTATT---------------------------------------------------------------------------CG-----TATTCATTTTTA-TGATT-------CACAC--------------------------------TTA-AA-TGGGGTAAT----------------------TAGTTGTCAGGTCGTAG-------ACATCAAGGTA---ACGTAGTTTGAAACCAGGTTATAAGATC---------TCTGTTTAA----------TTATTTAAA--GAT--------------------------------------------------------------CCAAGTGCA-CTTTA-----------CGCATATCTAACA---AGTACATCATCC-ACTTTTAGGCCACCTTCCCCTACGAGTGGCAGCCAAAGATTGTCTCGGATCAGCTGCT | 
	| droEug1 | 
	scf7180000409555:789300-789570 + | 
	 | 
	GTCT----AA--GTCAATTATTGT-----------------------------------------------------------------CA-----TTATCATTTTTA---TTG---------CTC--------------------------------TGA-AGTGCAGGTAATTAA----AAACGAAACGCAAAGCACTTTTTAGCTAATAA-------ACATTAAGGTA---AAGTAGTTTTTCTCTAGGTTATAAGATC---------ATTCATTA-TGTT-AGTCATTA---AATAATGTT--------T-----------------------GCTGAAAATGTTTT--------TA-----TTTTGTGCA-TAAAA-----------TAACCATTCAACT---GGAAATTTATTCCCATTTTAGGCCACCTTCCCGTACGAGTGGCAGCCAAAGATTGTGTCGGATCAGATCCT | 
	| droBia1 | 
	scf7180000302113:1087179-1087454 - | 
	 | 
	TGCATCCTAAAAGC---------------------------------------------------------------------------GAAAGGTTTTCCATTTTTA-TGATGTCGTTAGCACATTTTTTAGACAATCCCCGTATTTGTTTGTTT-TG-AATC-GGGGGTAATTAAGCTTAAACG---------------------------------------------------------------AGGTTACAGGGTC---------AACATTTTATACC--GTCTTAA-ACTAA--AATCTAAAAAATG-----------------------ATTAAATATAAA-T--------CACAGTCTTAAGAGCA-TTTAA-----------AACTAATTTAACA---CTTATTTTACCCCAACTTTAGGCCACCTTCCCCTACGAGTGGCAGCCCAAGATAGTATCCGATCAGCTCAT | 
	| droTak1 | 
	scf7180000415367:541997-542286 - | 
	 | 
	TGCT----AATAGT---------------------------------------------------------------------------AATATGATTTCCATTTTTAATGATGTCGTTAGTTCATTTAATAGACAATCTACG-TTTTGTTTGTTTTTTAA-AC-TGAGGTAATTAAACTTAAACGAAATGCAGAGCACTTGTCAGACTATAA-------AAATCAAGGTTATAATAACGTCTCC-ACCAGGTTATAAGGTC---------TTCCATTA----------------------AATCTTAAAATGTTGTTAA-----------------------------------------------------TA-TTTTA-----------AACTCATCTAAAT---AATATTTTCTTGCCATTCTAGGCCACCTTCCCCTATGAGTGGCAGCCGAAGATTGTCTCCGATCAGCTGAT | 
	| droEle1 | 
	scf7180000491280:2600846-2601107 + | 
	 | 
	TAAT-------------------------------------------------------------------------------------GA----------------------------------------------------CTTATGTTTATTT-TT-AAGC-TGACTCAATTTAGCTAACATTAAGTACAGAGCAGTTGTCAGACAATAA-------ATC-----------------------ACTGGGTTATTGGGTC---------ATCCATTTCTACT-TGTCATTATTCAGA--GATCTTAGAATGT-----------------------ACTCCAAGTGTTTT--------TTTTAACTTAAAGGTT-TTCCCAACCCACCAAATATTTATTTATTA---TTTATTTAATTGTCATTTTAGGCCACCTTCCCCTATGAGTGGCAGCCAAAGATTGTCTCAGATCAGCTGCT | 
	| droRho1 | 
	scf7180000780069:149948-150281 + | 
	 | 
	TATC----AA--ATATATTATTACAAAAAGTATTTTTATCATATTCAGTTTATTAATAAATTATACTAAGATATAAGCTGGAATTAATTGAAAG--TTTCCATTTTTA-TGATGTCGTTAGCACACCTAATGG----------CTTGTGCTTATTA-TTTA-AC-TAAAGCAATTTACCTAAAACGAATT-----------------------------------AAAGTG---CATTTATTTTT-ACC------------------------------------AGTCATTATTCGGA--AATCTTAGAATGT-----------------------ACTTTGTATATTTT--------TATTTTCCTGAGTGTT-TAGCA-----------AGCATATTTAACC---TTAACCTAATTCCCATTTTAGGCCACCTTCCCCTATGAGTGGCAGCCAAAGATTGTCTCGGATCAGCTGCT | 
	| droFic1 | 
	scf7180000454106:192630-192927 - | 
	 | 
	CTCACTTGATCATT---------------------------------------------------------------------------AAA----ACTCTGTTTGTG-CGAAT-------TAA----------------------------------ATA-AT-TAAAGCTATTAAGCTGAAACAAAAT-------ATTAGTCAAACAGTAACATTAAAGAC-----------------------ACTAGGTTATAATGTCATGCAGGTTATAATGTTATGC----------ATTGGA--GACCTCAAATCTTTTTTAATACATACTATATATGGTACTTCCTATACTATAAATATAGTACTTCCATGAATACATCTCTG-----------AACTTATCTATCT---T-TATTGCA-CACCCTTTCAGGCCACTTTCCCCTACGAGTGGCAGCCGAAGATAGTCTCGGATCAGCTCCT | 
	| droKik1 | 
	scf7180000302390:239087-239142 + | 
	 | 
	T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAGGCTACTTTCCCCTACGAGTGGCAGCCCAAGATTGTCTCCGACCAGCTCCT | 
	| droAna3 | 
	scaffold_12911:4709195-4709250 - | 
	 | 
	T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGGCCACCTTCCCTTACGAATGGCAGCCCAAAATAGTGTCCGATCAGTTGCT | 
	| droBip1 | 
	scf7180000396640:1546636-1546691 - | 
	 | 
	T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGGCCACCTTCCCTTACGAGTGGCAGCCAAAAATTGTGTCCGATCAGTTGTT | 
	| dp5 | 
	2:1236782-1236843 - | 
	 | 
	T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCCTTCTAGGCCACCTTCCCGTACGAGTGGCAGCCGAAGATCGTGTCCGACCAGCTGCT | 
	| droWil2 | 
	scf2_1100000004943:9791807-9791871 + | 
	 | 
	TTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTAACAGGCAACATTCCCCTATGAATGGCAACCCAAAATTGTGTCTGATCAGCTGCT | 
	| droVir3 | 
	scaffold_13047:15844630-15844695 + | 
	 | 
	A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTGCTTTGCAGGCAACTTTCCCGTACGAGTGGCAGCCGAAAATTGTATCCAATCAACTCCT | 
	| droMoj3 | 
	scaffold_6540:19357673-19357736 + | 
	 | 
	T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCCCCTCTTAGGCAACCTTCCCGTACGAGTGGCAGCCCAAAATCGTATCCAATCAGATCCT | 
	| droGri2 | 
	scaffold_14830:4164485-4164609 - | 
	 | 
	ATTT----------------------------------------------------------------------------------------------------------------------ACGA--------------------------------TTA-TA-TGG----------------------------------------------------------------------------------------------------------------------------------A--AACTTTACA-AATAGTTTA-----------------------------------------------------TG-TTTTA-----------TATACA----TTATTTAAAATATTATCTTCTTTTCAGGCAACTTTCCCGTACGAATGGCAACCAAAAATTGTATCCAATCAAATCTT |