ID:

dsi_7338

 Coordinate:

4:153568-153768 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
T-richLow_complexityLow_complexity+

Sense Strand Reads

CAGTGTGTTCTTAGAAATTTAGCGACGGCTTTGCGGTTTGTATCTTGCAAGTAAGTAGCACATAAATAATAATATTGAATTCGAATTTAATTATGCTTTTTTATGTTATGTTTCGTTTCTTTTCTATTTTTGTTTCTTTTTCTCCCTTATTTCATTTTAACAATATTAAACAGGTATGTATTTATTTATATATATATTTATATTTCCATCTTTGCATCTAATTATTATTTTTTTATGTTACTATTATTTAGTATTCCCAATACAGTTGTACAGCTTGTTGTCTTGCAGATGATGGTCTTTC
**************************************************...(((((((...((((((((((...(((..((((......((((......))))......)))).)))..........(((((........................)))))........((((((((((........)))))))))).....................)))))))))).....))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR902008
ovaries
 M024
male body		 O002
Head
 M025
embryo
 GSM343915
embryo
.......TTCTTAGAAATTTAGCGACGTCTCT............................................................................................................................................................................................................................................................................. 25 2 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
........TCTTAGAAATTTAGCGACGGCTTT............................................................................................................................................................................................................................................................................. 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
........................................TATCTTGCAAGTAAGTAGCACATAAA........................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TTGTTGTCTTGCAGATGATGGTCTT.. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........TAGAAATTTAGCGACGGCTTTGCGGT........................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........TCTTAGAAATTTAGCGACGGC................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..GTGTGTTCTTAGAAATTTAGCGACGG................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TGTACAGCTTGTTGTCTTGCAGA............ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...TGTGTTCTTAGAAATTTAGCGACGGCTT.............................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.................................CGGTTTGTATCTTGCAA........................................................................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................CCAATACAGTTGTACAGCTTGTT...................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................TTAGCGACGGCTTTGCGGT........................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TACAGCTTGTCGTCTTCCAGATA.......... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................CGACGGCTTTGCGGTTTGTATCTTGCAA........................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..............................TTGCGGTTTGTATCT................................................................................................................................................................................................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................TTGCGGTTTGTATCTTGCA............................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................CCCAATACAGTTGTACAGCTT......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................TGTCTTGCAGATGATGGTCTTTC 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............AGAAATTTAGCGACGGCTTTGCGG......................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.......TTCTTAGAAATTTAGCGACGGCTTT............................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....TGTTCTTAGAAATTTAGCGACGGCTTT............................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...TGTGTTCTTAGAAATTTAGCGACGGC................................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGTTGTCTTGCAGATGATGGTCTT.. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTACAGCTTGTTGTCTTGCAGATGATG....... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................ACAGCTTGTCGTCTTCCAGA............ 20 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................ACAGCTTGTCGTCTTCCAG............. 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
........TCTTAGAAATTTAGCGAC................................................................................................................................................................................................................................................................................... 18 0 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................AGGGATGTATTTATT................................................................................................................... 15 1 17 0.12 2 0 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................TCAGTCTTTTTCTCCCTTAT....................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTACATCTTGGGGTCTTGC............... 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0
....GTGTTGTTAGAGGTTTAGC...................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTCACACAAGAATCTTTAAATCGCTGCCGAAACGCCAAACATAGAACGTTCATTCATCGTGTATTTATTATTATAACTTAAGCTTAAATTAATACGAAAAAATACAATACAAAGCAAAGAAAAGATAAAAACAAAGAAAAAGAGGGAATAAAGTAAAATTGTTATAATTTGTCCATACATAAATAAATATATATATAAATATAAAGGTAGAAACGTAGATTAATAATAAAAAAATACAATGATAATAAATCATAAGGGTTATGTCAACATGTCGAACAACAGAACGTCTACTACCAGAAAG
**************************************************...(((((((...((((((((((...(((..((((......((((......))))......)))).)))..........(((((........................)))))........((((((((((........)))))))))).....................)))))))))).....))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 SRR902009
testis
 M025
embryo
 GSM343915
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
......................................................................................................................................................................................................................................................................GTCAACATGTCGAACAACAGAACGT.............. 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................CCAAAGAAAAGGAGGGAATA....................................................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................CAAAGAAAAGGAGGGATTA....................................................................................................................................................... 19 2 4 1.00 4 0 0 1 1 0 0 2 0 0 0
....................TCGCTGCCGAAACGCCAAACATAGAACGT............................................................................................................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TTATGTCAACATGTCGAACAACAGAACGT.............. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TAGAAACGTAGATTAATAATAAAAAAAT.................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AGGGAATAAAGTAAAATTGTTATAAT..................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................ATATATATAAATATAAAGGTAGAAAC....................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................TCGCTGCCGAAACGCCAA....................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................AGAACGTTCATTCATCGTGTATTTAT......................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................GGTTATGTCAACATGTCGAAC........................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................ATAAAGTAAAATTGTTATAATTTGT................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................CAAAGAAAAGGAGGGATTAA...................................................................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................CAAAGAAAAGGAGCGAATA....................................................................................................................................................... 19 2 8 0.38 3 0 0 1 0 2 0 0 0 0 0
...................................................................................................................................CAAAGAAAAGGAGCGAATAA...................................................................................................................................................... 20 2 6 0.33 2 0 0 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................TGATAATTAAGCATAAGGG........................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................CCAAAGAAAAGGAGGCAATAA...................................................................................................................................................... 21 3 9 0.22 2 0 0 2 0 0 0 0 0 0 0
..................................................................................................................................CCAAAGAAAAGGAGGGAAT........................................................................................................................................................ 19 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................AAAGAAAAGGAGGGATTAA...................................................................................................................................................... 19 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................GTAGAAACGGACTTTAATAAT.......................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................AGATAAGCTAACAACAAAGAAA.................................................................................................................................................................. 22 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................................AAACGTAGCAAAATAATAAAAAAA................................................................... 24 3 18 0.06 1 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:153518-153818 + dsi_7338 CAGTGTGTTCT------T-AGA-------------------------------AATTTAGCGACGGCTTTG------CGGTTTGTATCTTGCAAGTAAGTAGCACATAAATAATAA-TATTGA----------ATTCGAAT---TTAATTATGCTTT-------------TTTATGTTATGT-------------------------------TTCGT-----------------------------------------------------------------------------------------------------------------------------------------TTCTTTTCTATTTTT------------------GTTTCTTTTTCTCCCTTATTTCATTTTAACAATATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------AA----------------C-------------------------AGG-TATG-------------------------------------------------------------------------TA----------------------------------------------------------------------------------TTTATTTATATATATATTTATA----------------------------------------------------------------------TTTCCATCTTTGCATCTAATTAT-----------------TATTTTTTTATGTT---ACTATT------------------ATTTAG------TATTCCCAATA--CAGTTGTACAGCTTGTTGTCTTGCAG--AT-G------------------------------------------------------------------------------ATGGTCTTTC
droSec2 scaffold_52:151473-151774 + CAGTGTGTTCT------G-AGA-------------------------------AATTTAGCGACGTCTTTG------CGGTTTGTATCTTGCAAGTAAGTAGCACATAAATAATAA-TATTTA----------ATTCGAAT---TTAATTATGCTTT-------------TTTATGTTATGT-------------------------------TTCGT-----------------------------------------------------------------------------------------------------------------------------------------TTCTTTTCTATTTTT------------------GTTTCTTTTTCTCCCTTATTTCATTTTAACAATATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------AA----------------C-------------------------AGG-TATG-------------------------------------------------------------------------TA----------------------------------------------------------------------------------TTTATTTATATATATATTTATA----------------------------------------------------------------------TTTCCTTCTTTGCATCTAATTAT-----------------TATTTTTTTATGTT---ACTATT------------------ATTTAG------TATTCCCAATA--CAGTTGTACAGCTTGTTGTCTTGCAG--ACAG------------------------------------------------------------------------------ATAGTCTTTC
dm3 chr3L:23242733-23243011 - ATGTGTTTTCT------T-AGA-------------------------------AATTTAGTGACGGCTTTC------AGGTTTGTATTATGCAAGTAAGTTGCACATAACTAATAA-TGTTTATAAATATTTCATTTGAAT---TTAATT-----------------------------TGT-------------------------------GTCGT-----------------------------------------------------------------------------------------------------------------------------------------GTCTTTTCCATTATT-------------------TATCCTTTTCTCCCTTATTTAATTTTAACAGCATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----------------C-------------------------GGG-TATG-------------------------------------------------------------------------TA----------------------------------------------------------------------------------TGTATGTATATAAA------TA----------------------------------------------------------------------TTTGCATCATTGTATTTAATTAT-----------------TATATCATTATGTTGTTATTATT------------------AGTAAT------TATTCCCAATA--CAGTA----------TTGTCTTGCAG--AT-G------------------------------------------------------------------------------ATT-GATTGC
droEre2 scaffold_4845:529238-529557 + CCTCGAT----------G-AGA-------------------------------TATGTTGTGGCTGCTTTCGAATTTGGGTTTGTATATTGCAAGTAAGTACCCATTTATTAATTA-TATTTAC----ATTTTATGTTAAT---TTAGTTATGCGTT-------------GTT------CGT----------------------------------------------------------------------------------------------------------------------CTCGATTCCTTTCACTTAATTTTTGT----TTTT-----------CC--------------T-CATTTTA------------------TTTTCTTTTTACCCAATGTTTTAATAAAACAGCATTAATGAAATGAAAAGATACGTACATACA-TTAATATATA--TGTAAATTTGTATTTTAAATTTTAATGCTTGTTATATTTGAATATTATATTTTATC----TATATCTTG--------------CAGAATTA----------------------------------------------------------------------CAAACGATGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATATTTC
droYak3 v2_chr2h_random_005:486120-486409 + TAGTCTTTTCC------T-AGA-------------------------------AATCTAGCGAAGACTTTCTGATTTGGGTTTATATTTTGCAAGTAAGTAGCACATTATTTATAA-TATTTATAAGTATTTTATTTCAAT---TTAATTATGCGGT-------------TTTTCTTCACCT-------------------------------TTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT-TATTTTTATATATTAAA-ATTATATATT------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATGTTTGCCTAAATCAACAAGGCTAC--------TGATACTAAAGGTTATATCGCCATTTT---------ATTTAAACAAAATAAAAAATGAAAAATTTATTTAACCGGGA--CGGTG--------TTATATTTTTTGG--GA---------------------GC---------------------------------------------------------ACGACCTCTA
droEug1 scf7180000406353:949-1172 - TGGATTCTTTA------T-TAA-------------------------------AATTTAACTTTGGTTTTA------TAATTTTCCTCCTTTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------GTCAGTATT-------------------------------------------------------------------ATGCCTATAACTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATAGTA--------------GCCCGAATC-TGAAATGGCAT--A*TT----------------------------------------------------------------------------------------------------------------TATATTTTATATTTATATTTTATA-------------------------------------------------------------------------TT----------------------------------------------------------------------------------TATATTTATATT------------------------TATATTTATATTTATATTTATA----------------------------------TTTATATTTATATTTATATTTAT-----------------TATTTAT-TAT---------------------------------------------TTAT--------------------------------------TATTTATTA------TTT----------------------------------------------------------------ATTATT
droBia1 scf7180000299930:17712-17942 + AGTCCTTAATCAATAA-----------------------------------------------------------------------------------------------------TACT-------------------------------------------------------------------------------------------------AGCCTATTTAGCAACTAATTACTTTTACTTTATGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------TTGCCTATGCGTATTTTG--------------ACCCGTATTTTGAATTGTCTATTG-TTATA---------------------------------------------------------------TATAT-------------TATATATATATATTTAT-AAAT--------------------------TATA-------------------------------------------------------------------------TA----------------------------------------------------------------------------------TATATTTATATATATATATATA----------------TTTTTATATATATATATATATTTT----------------------------------------T------------------------------------ATATATA---TATTTTT-----------------TTTATA------TATATATAA------------------------------------TATATATA------TATA----------------------------------------------------------------TTTTAT
droTak1 scf7180000415560:110385-110604 - GTTGATAATTTGGCAG-------------------------------------------------------------------------------TAAGTAA-------AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---A--------ATAATA-----------GGTA-------ATATA---------------------------------------------TTAA--------------------------------------------------------------------------------------------------------------------------ATACCT---------------------------------------------------------------AC-------------TTAATATTAATATTAAT-AATT-----TTTATTCTTTTTTGTTTTCTT--------------------T---TCTTTTTTTTTTTTGTTTAGGAAATATTTATAATGTAATTTTATCTTTTTTTGTTTTCTTTTCTCTTTTTTCTTTAGGAAA--------------------------------------------------TATTTATTATCTTA----------------------------------------------------------------------------------------------------------------------------------TTTTTATC---TTTTTT------------------GTT---------------------------------------------------------------------TT----------------------------------------------------------------GTTTTCC
droEle1 scf7180000490200:2025-2194 + ACAGACAACAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCA-TAATTCGACAT--ACTTATT---------------------------------------------------------------TATTTA------------TCTATTTATTTATTTATTTAATTGTTTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTATTTAGTTCATTATTTATTTATATCATTATTTATATTTTTATTTATTTATTTATTTATT--------------------------------------------------TGTTTATTTAT----------------------------------------------------------------------------------------TTATT--TATTTATTTC----------------------------------------------------------------ATTATA
droRho1 scf7180000777589:5777-6067 + CAGTAAATTCT------T-GTA-------------------------------GATTAAA---------------------------------AATAAGTAA-----------TGA----T-------------------------------------------------------------------------------------------------AGCCT-------------------TTCGTCTAC--------------------------------------------------------------------------------------------------------ATC---A--------TTGACCAAGCTTAAATGATTT-------ATTGT---------------------------------------------TTCAATAC-------------C---------------------------------------------TTTGTTT--ACCGCATCTATTACTTTATTAAGTTCATTAACTTGAATTGTGTTTTG-TTCTA---------------------------------------------------------------AATTT-TAAATTTTATTTAT----------------TAAT----TC-TTCTTTATCTTGTTCATCT-AATGTTGCAAATAGATATTTGTATGTT------------------GTACCTATGTATAAAA-------------------------------------------------------------------------------------------------------------------TTTATA----------------------------------------------------------------------AGACCTC--------------------TTTTGCTAC------------------------GTT------------------ATGCA---------------------------------ATTCTAATT-CCATT----------------------CAT---------------------------------------------------------TTCTCTGTTA
droFic1 scf7180000453323:137695-137866 + GTAA--------------------------------------------------------------------------------------------------CACACATATATTGG-TTTTCT----------TTTCGATT---TTTATGTTGCTTT-------------TAATCGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTATTTTTTTTGTTTGTTT--------------------TATGTTTTTTGTCTGTTTGTTTAGGCATTCCTAAGGCTACAATTT----------------------------------------------GTATG---------------------------------------------TGTTTCTGTGTGTT------TG----------------------------------------------------------------------TTTGGGTGGTT--------TTAT-----------------TCCC-------------------------------------------------------------------------------------------------------------------------------TCTTTA------------------------------------------CTCCTAA
droKik1 scf7180000301798:40519-40770 - AGTAGTAAATGGATTAT-TGATTTGAAATTGTTTTTTGCTTGTCGTTTTATAATTTGTTGTTGTTGCTTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTCAATT----------------------------------------------AAGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACGGCTAGTGTTTTG-TTATTCTC---------------------------------------------------------------GT-------------TATAAATTAAAATTAGT-TAGG--------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATCTACATATGCTCACG----------------------------------------------------------------------CTTCCATTTCGGCCTTGTCTTAT-----------------TATCTTTCCATATA---ATTCTT------------------AATAAT------AATTAACTAAA--TAATTGTAATGTGTATAA--------------TTTATGCA------ATTC----------------------------------------------------------------TTTTTC
droAna3 scaffold_13099:1414952-1415180 + CTACGCCTTCC------T-ACA-------------------------------TATTTCTT----CTTTTCCTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTT----------------------------------------------AAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA------AATATTTTA-TTATTTTCCTTAAATACTTTTATACTTTTACTTTTACTTTTACTTTATTTTTACTATTGTATTC----TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTCCCCTATTTTCTTTTTTTATATTTTGAGAAAAATCTTTGCTACTTTATTTTTATATTTTTA----------------------------------------------------------------------CTTTTT----TCTATCTATTTTT-----------------CC------------------------------------------------------------------------------------------------TTTTTATTT------TTT----------------------------------------------------------------TTTATT
droBip1 scf7180000392068:1300-1509 + TTTGTATTTAA-----------------------------------------------------------------------------------------------------------------------------------------TTGAA--TT-------------TTTTTGCTTTGT-------------------------------TTTGT-----------------------------------------------------------------------------------------------------------------------------------------TTTTCTTTTATTT-------------------CTTT-------CTTTTGTATTT---------------------------------------------ATTTTTTTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTTCTT------------------T----------------------------TGTATTATTTTTTGTATTATTTTTTTGTATTATTTTTTGTATTATTTTTTTTATTATTTTTTGTATTATTTTTTGTAG--------------------------------------------------------------------------------------------------------CTC--------------------CTTTTATA-----------------------------------------------------------------------CTTTATT----TTTATTTACTTGCCA--ATCA------------------------------------------------------------------------------CTAGTCTTTG
dp5 XR_group8:6915891-6916132 - CCTTGCATTTTG------------------------------------------------------TTTTCATGTTTAAA-------------TGTCTATAAAGTATATATAATATATATTTC------------TGCATTTCTGTAATTTTACCTTTGTGGTTTGTATTTTTT----------------------------------------------------------------------------------------------------CTTTTTGTTTTTTTTTTTGTTTTCTCATTTATTTTCA--------------------------------------------------------------------------------------------TTGTTTGGTTTTGTTTAACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC----------------C-------------------------AGT-TGTT-------------------------------------------------------------------------CT----------------------------------------------------------------------------------TTTATTTATATACC------TA-------------------------------G----------------------------TACACTTTTGCATAAGTTTTCGTGTATAATAAT-----------------TATTTATTAATAAT---AATGTA------------------ATGCA------------------------------------------------------------------------------------------------------------------------------------------AT
droPer2 scaffold_6:2773974-2774186 + ACATTGATTTT------TTGTA-------------------------------TAGATAT---------TTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---T--------ATATTA-----------ATTT-------CTTGT---------------------------------------------ATAGATATTTTTTTTATATTAT---------------------------------------------TTTCTTGTATAGATATTTTTTGGTATATTAAATTTATTAGATTCATTTTTGTTA-------------------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------ATTA-------------------------------------------------------------ATT----------------------------------------------------------------------TTTTTAT----ATTAATTATTAT-----------------TATTATTTATTGTT---ATTATT------------------ATTAAG------TTTTTATTATATT-AATTG--------------TT-CTATT----------------------AAT---------------------------------------------------------TTGTTTTTTT
droWil2 scf2_1100000004965:80675-80906 - ATTTAAAATTGAACGA-----------------------------------------------GGAATT-----------------------------------------------------------------------------------------------------------------------------------------------------AACCGACCGCACAACCGCTTAC-------------------------------------------------------------------------------------------------------------------CAT---------------------------------------------------------AAAAATAAAAATAACATAAAATTAAACATAACTTTAGCTTATTTACATATATAAT---------------------------------------------TTACTTGCACTTTTCTCA--------------GCTGATGT----------------------------------------------------------------------CAATCGATTGTTCAATATCC-------------AA----------------T-------------------------ATT-TATT-------------------------------------------------------------------------TA----------------------------------------------------------------------------------TTTATTTATTTATTTATTTATTTA------------------------------------TTTATTTATTTATTTATTTATT--------------------------------------------------TATTTATTTAT------------------------------------------------------------------------------------------TTATTT------ATT----------------------------------------------------------------TATTTA
droVir3 scaffold_12970:2897060-2897278 + ATATTTATATT------T-ATA-------------------------------TTTATAT---------TTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT---T--------ATATTT-----------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATATTTATATTTATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATTTATATTTATATTTATATTTATATTTATATTTATATTTATATTTATATTTATATTTATA----------TTTATA----------------------------------------TTTAT----------------------------------------------------------------------------------------ATTTA--TATTTATATTTATATTTATATTTCTACTATGTTGCTAGTAGGGTAATCAGAATTCAGCTTAATGAAAATTATTGTACTGC
droMoj3 scaffold_6496:9537464-9537690 + CTTGCCAGCTGAATAA--------------------------------------------------------------------------------------TATTTAAATATTAT-AATTTT----------TTTTCAAT---TAATTAA-----------------------------------------------------------------------------------------TTTTCGTTTATTTTT-TTTTTTTTTTTAACTTAACTTTTTATTTTTGTATTTATTTATTTATTTATTTTTATTATTTAATTTTTAT----TTTT-----------TT--------------T-TATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATTTATTTT----------------------------------------------------------------------TTTCCACTTTTGTAACTATTTATTTATTTTAGT-------TAT---------------TTAAT------------------TTTTAG------TA-----------------------------------------------------------------------------------------------------------------------------TTCTTA
droGri2 scaffold_14853:7627270-7627456 + TTTTAGTTTAT------T-----------------------------------------------------------------------------------------------------------------------------------------TT-------------TTTATCTTTCGTTTTGTTTTTTTTTCTCATTTTTTTTTTATTA----------------------------------TTTAGGATT-------------------------------------------------------------------TATACAATAACTTAACATTTGTTTTGC-----TCT---------------------------------------------------------TGGAATCGGAAATATACAATATTAAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---------------------------------------------------------------------------------ATTTCTTGTT---GCATTT------------------ATTTTG------TGTTTCTTTAGTTCACTGATTTTGCTTGT-------------------------------TGA----------------------------------------------------------------GTTGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAGTGTGTTCT------T-AGA-------------------------------AATTTAGCGACGGCTTTG------CGGTTTGTATCTTGCAAGTAAGTAGCACATAAATAATAA-TATTGA----------ATTCGAAT---TTAATTATGCTTT-------------TTTATGTTATGT-------------------------------TTCGT-----------------------------------------------------------------------------------------------------------------------------------------TTCTTTTCTATTTTT------------------GTTTCTTTTTCTCCCTTATTTCATTTTAACAATATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------AA----------------C-------------------------AGG-TATG-------------------------------------------------------------------------TA----------------------------------------------------------------------------------TTTATTTATATATATATTTATA----------------------------------------------------------------------TTTCCATCTTTGCATCTAATTAT-----------------TATTTTTTTATGTT---ACTATT------------------ATTTAG------TATTCCCAATA--CAGTTGTACAGCTTGTTGTCTTGCAG--AT-G------------------------------------------------------------------------------ATGGTCTTTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........TCT------T-AGA-------------------------------AATTTAGCGACGGCTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000002000000000
....................................................................................TATCTTGCAAGTAAGTAGCACATAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGTCTTGCAG--AT-G------------------------------------------------------------------------------ATGGTCTT..2511.00100000000001000000
.................T-AGA-------------------------------AATTTAGCGACGGCTTTG------CGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
........TCT------T-AGA-------------------------------AATTTAGCGACGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
..GTGTGTTCT------T-AGA-------------------------------AATTTAGCGACGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACAGCTTGTTGTCTTGCAG--A...........................................................................................2311.00100000000010000000
...TGTGTTCT------T-AGA-------------------------------AATTTAGCGACGGCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
.............................................................................CGGTTTGTATCTTGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATA--CAGTTGTACAGCTTGTT.......................................................................................................2311.00100000000001000000
........................................................TTAGCGACGGCTTTG------CGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
............................................................CGACGGCTTTG------CGGTTTGTATCTTGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
....................................................................TTG------CGGTTTGTATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
....................................................................TTG------CGGTTTGTATCTTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATA--CAGTTGTACAGCTT..........................................................................................................2111.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTTGCAG--AT-G------------------------------------------------------------------------------ATGGTCTTTC2311.00100000000100000000
...................AGA-------------------------------AATTTAGCGACGGCTTTG------CGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.......TTCT------T-AGA-------------------------------AATTTAGCGACGGCTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.....TGTTCT------T-AGA-------------------------------AATTTAGCGACGGCTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
...TGTGTTCT------T-AGA-------------------------------AATTTAGCGACGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTCTTGCAG--AT-G------------------------------------------------------------------------------ATGGTCTT..2411.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGCTTGTTGTCTTGCAG--AT-G------------------------------------------------------------------------------ATG.......2711.00101000000000000000
........TCT------T-AGA-------------------------------AATTTAGCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.33100100000000000000
droSec2
CAGTGTGTTCT------G-AGA-------------------------------AATTTAGCGACGTCTTTG------CGGTTTGTATCTTGCAAGTAAGTAGCACATAAATAATAA-TATTTA----------ATTCGAAT---TTAATTATGCTTT-------------TTTATGTTATGT-------------------------------TTCGT-----------------------------------------------------------------------------------------------------------------------------------------TTCTTTTCTATTTTT------------------GTTTCTTTTTCTCCCTTATTTCATTTTAACAATATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------AA----------------C-------------------------AGG-TATG-------------------------------------------------------------------------TA----------------------------------------------------------------------------------TTTATTTATATATATATTTATA----------------------------------------------------------------------TTTCCTTCTTTGCATCTAATTAT-----------------TATTTTTTTATGTT---ACTATT------------------ATTTAG------TATTCCCAATA--CAGTTGTACAGCTTGTTGTCTTGCAG--ACAG------------------------------------------------------------------------------ATAGTCTTTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................AATATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------AA----------------C-------------------------AGG-TATG-------------------------------------------------------------------------TA----------------------------------------------------------------------------------TT............................................................................................................................................................................................................................................................................................................................2111.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCTTGTTGTCTTGCAG--A...........................................................................................2111.0010100
dm3
ATGTGTTTTCT------T-AGA-------------------------------AATTTAGTGACGGCTTTC------AGGTTTGTATTATGCAAGTAAGTTGCACATAACTAATAA-TGTTTATAAATATTTCATTTGAAT---TTAATT-----------------------------TGT-------------------------------GTCGT-----------------------------------------------------------------------------------------------------------------------------------------GTCTTTTCCATTATT-------------------TATCCTTTTCTCCCTTATTTAATTTTAACAGCATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----------------C-------------------------GGG-TATG-------------------------------------------------------------------------TA----------------------------------------------------------------------------------TGTATGTATATAAA------TA----------------------------------------------------------------------TTTGCATCATTGTATTTAATTAT-----------------TATATCATTATGTTGTTATTATT------------------AGTAAT------TATTCCCAATA--CAGTA----------TTGTCTTGCAG--AT-G------------------------------------------------------------------------------ATT-GATTGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................ATT-----------------------------TGT-------------------------------GTCGT-----------------------------------------------------------------------------------------------------------------------------------------GTCTTTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TGT-------------------------------GTCGT-----------------------------------------------------------------------------------------------------------------------------------------GTCTTTTCCATTATT-------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----------------C-------------------------GGG-TATG-------------------------------------------------------------------------TA----------------------------------------------------------------------------------TG............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................TC------AGGTTTGTATTATGCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TTCT------T-AGA-------------------------------AATTTAGTGACGGCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTTCT------T-AGA-------------------------------AATTTAGTGACGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......TTCT------T-AGA-------------------------------AATTTAGTGACGGCTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTGTATTATGCAAGTAAGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........TCT------T-AGA-------------------------------AATTTAGTGACGGCTTTC------AGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................T-----------------------------TGT-------------------------------GTCGT-----------------------------------------------------------------------------------------------------------------------------------------GTCTTTTCCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................TGAAT---TTAATT-----------------------------TGT-------------------------------GTCGT-----------------------------------------------------------------------------------------------------------------------------------------GTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--CAGTA----------TTGTCTTGCAG--A...........................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GAAT---TTAATT-----------------------------TGT-------------------------------GTCGT-----------------------------------------------------------------------------------------------------------------------------------------GTCTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------C-------------------------GGG-TATG-------------------------------------------------------------------------TA----------------------------------------------------------------------------------TGTATGTAT.....................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------------------------------------------------------------------------------TGTATGTATATAAA------TA----------------------------------------------------------------------T.................................................................................................................................................................................................................................1970.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------TATATCATTATGTTGTTAGAC.....................................................................................................................................................................2250.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TATG-------------------------------------------------------------------------TA----------------------------------------------------------------------------------TGTATGTATATAAA------TG----------------------------------------------------------------------..................................................................................................................................................................................................................................2350.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCTCGAT----------G-AGA-------------------------------TATGTTGTGGCTGCTTTCGAATTTGGGTTTGTATATTGCAAGTAAGTACCCATTTATTAATTA-TATTTAC----ATTTTATGTTAAT---TTAGTTATGCGTT-------------GTT------CGT----------------------------------------------------------------------------------------------------------------------CTCGATTCCTTTCACTTAATTTTTGT----TTTT-----------CC--------------T-CATTTTA------------------TTTTCTTTTTACCCAATGTTTTAATAAAACAGCATTAATGAAATGAAAAGATACGTACATACA-TTAATATATA--TGTAAATTTGTATTTTAAATTTTAATGCTTGTTATATTTGAATATTATATTTTATC----TATATCTTG--------------CAGAATTA----------------------------------------------------------------------CAAACGATGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATATTTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAAATTTTAATGCTTGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTA----------------------------------------------------------------------CAAACGATGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGATATTT.2611.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTA----------------------------------------------------------------------CAAACGATGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAT.....2011.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAATGAAAAGATACGTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
................................................................................TTTGTATATTGCAAGTAAGTACCCATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
droYak3
TAGTCTTTTCC------T-AGA-------------------------------AATCTAGCGAAGACTTTCTGATTTGGGTTTATATTTTGCAAGTAAGTAGCACATTATTTATAA-TATTTATAAGTATTTTATTTCAAT---TTAATTATGCGGT-------------TTTTCTTCACCT-------------------------------TTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT-TATTTTTATATATTAAA-ATTATATATT------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATGTTTGCCTAAATCAACAAGGCTAC--------TGATACTAAAGGTTATATCGCCATTTT---------ATTTAAACAAAATAAAAAATGAAAAATTTATTTAACCGGGA--CGGTG--------TTATATTTTTTGG--GA---------------------GC---------------------------------------------------------ACGACCTCTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TGGATTCTTTA------T-TAA-------------------------------AATTTAACTTTGGTTTTA------TAATTTTCCTCCTTTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------GTCAGTATT-------------------------------------------------------------------ATGCCTATAACTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATAGTA--------------GCCCGAATC-TGAAATGGCAT--A*TT----------------------------------------------------------------------------------------------------------------TATATTTTATATTTATATTTTATA-------------------------------------------------------------------------TT----------------------------------------------------------------------------------TATATTTATATT------------------------TATATTTATATTTATATTTATA----------------------------------TTTATATTTATATTTATATTTAT-----------------TATTTAT-TAT---------------------------------------------TTAT--------------------------------------TATTTATTA------TTT----------------------------------------------------------------ATTATTSizeHit CountTotal NormTotal
No Reads
droBia1
AGTCCTTAATCAATAA-----------------------------------------------------------------------------------------------------TACT-------------------------------------------------------------------------------------------------AGCCTATTTAGCAACTAATTACTTTTACTTTATGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------TTGCCTATGCGTATTTTG--------------ACCCGTATTTTGAATTGTCTATTG-TTATA---------------------------------------------------------------TATAT-------------TATATATATATATTTAT-AAAT--------------------------TATA-------------------------------------------------------------------------TA----------------------------------------------------------------------------------TATATTTATATATATATATATA----------------TTTTTATATATATATATATATTTT----------------------------------------T------------------------------------ATATATA---TATTTTT-----------------TTTATA------TATATATAA------------------------------------TATATATA------TATA----------------------------------------------------------------TTTTATSizeHit CountTotal NormTotal
No Reads
droTak1
GTTGATAATTTGGCAG-------------------------------------------------------------------------------TAAGTAA-------AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---A--------ATAATA-----------GGTA-------ATATA---------------------------------------------TTAA--------------------------------------------------------------------------------------------------------------------------ATACCT---------------------------------------------------------------AC-------------TTAATATTAATATTAAT-AATT-----TTTATTCTTTTTTGTTTTCTT--------------------T---TCTTTTTTTTTTTTGTTTAGGAAATATTTATAATGTAATTTTATCTTTTTTTGTTTTCTTTTCTCTTTTTTCTTTAGGAAA--------------------------------------------------TATTTATTATCTTA----------------------------------------------------------------------------------------------------------------------------------TTTTTATC---TTTTTT------------------GTT---------------------------------------------------------------------TT----------------------------------------------------------------GTTTTCCSizeHit CountTotal NormTotal
No Reads
droEle1
ACAGACAACAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCA-TAATTCGACAT--ACTTATT---------------------------------------------------------------TATTTA------------TCTATTTATTTATTTATTTAATTGTTTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTATTTAGTTCATTATTTATTTATATCATTATTTATATTTTTATTTATTTATTTATTTATT--------------------------------------------------TGTTTATTTAT----------------------------------------------------------------------------------------TTATT--TATTTATTTC----------------------------------------------------------------ATTATASizeHit CountTotal NormTotal
No Reads
droRho1
CAGTAAATTCT------T-GTA-------------------------------GATTAAA---------------------------------AATAAGTAA-----------TGA----T-------------------------------------------------------------------------------------------------AGCCT-------------------TTCGTCTAC--------------------------------------------------------------------------------------------------------ATC---A--------TTGACCAAGCTTAAATGATTT-------ATTGT---------------------------------------------TTCAATAC-------------C---------------------------------------------TTTGTTT--ACCGCATCTATTACTTTATTAAGTTCATTAACTTGAATTGTGTTTTG-TTCTA---------------------------------------------------------------AATTT-TAAATTTTATTTAT----------------TAAT----TC-TTCTTTATCTTGTTCATCT-AATGTTGCAAATAGATATTTGTATGTT------------------GTACCTATGTATAAAA-------------------------------------------------------------------------------------------------------------------TTTATA----------------------------------------------------------------------AGACCTC--------------------TTTTGCTAC------------------------GTT------------------ATGCA---------------------------------ATTCTAATT-CCATT----------------------CAT---------------------------------------------------------TTCTCTGTTASizeHit CountTotal NormTotal
No Reads
droFic1
GTAA--------------------------------------------------------------------------------------------------CACACATATATTGG-TTTTCT----------TTTCGATT---TTTATGTTGCTTT-------------TAATCGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTATTTTTTTTGTTTGTTT--------------------TATGTTTTTTGTCTGTTTGTTTAGGCATTCCTAAGGCTACAATTT----------------------------------------------GTATG---------------------------------------------TGTTTCTGTGTGTT------TG----------------------------------------------------------------------TTTGGGTGGTT--------TTAT-----------------TCCC-------------------------------------------------------------------------------------------------------------------------------TCTTTA------------------------------------------CTCCTAASizeHit CountTotal NormTotal
No Reads
droKik1
AGTAGTAAATGGATTAT-TGATTTGAAATTGTTTTTTGCTTGTCGTTTTATAATTTGTTGTTGTTGCTTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTCAATT----------------------------------------------AAGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACGGCTAGTGTTTTG-TTATTCTC---------------------------------------------------------------GT-------------TATAAATTAAAATTAGT-TAGG--------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATCTACATATGCTCACG----------------------------------------------------------------------CTTCCATTTCGGCCTTGTCTTAT-----------------TATCTTTCCATATA---ATTCTT------------------AATAAT------AATTAACTAAA--TAATTGTAATGTGTATAA--------------TTTATGCA------ATTC----------------------------------------------------------------TTTTTCSizeHit CountTotal NormTotal
No Reads
droAna3
CTACGCCTTCC------T-ACA-------------------------------TATTTCTT----CTTTTCCTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTT----------------------------------------------AAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA------AATATTTTA-TTATTTTCCTTAAATACTTTTATACTTTTACTTTTACTTTTACTTTATTTTTACTATTGTATTC----TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTCCCCTATTTTCTTTTTTTATATTTTGAGAAAAATCTTTGCTACTTTATTTTTATATTTTTA----------------------------------------------------------------------CTTTTT----TCTATCTATTTTT-----------------CC------------------------------------------------------------------------------------------------TTTTTATTT------TTT----------------------------------------------------------------TTTATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTTGTATTTAA-----------------------------------------------------------------------------------------------------------------------------------------TTGAA--TT-------------TTTTTGCTTTGT-------------------------------TTTGT-----------------------------------------------------------------------------------------------------------------------------------------TTTTCTTTTATTT-------------------CTTT-------CTTTTGTATTT---------------------------------------------ATTTTTTTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTTCTT------------------T----------------------------TGTATTATTTTTTGTATTATTTTTTTGTATTATTTTTTGTATTATTTTTTTTATTATTTTTTGTATTATTTTTTGTAG--------------------------------------------------------------------------------------------------------CTC--------------------CTTTTATA-----------------------------------------------------------------------CTTTATT----TTTATTTACTTGCCA--ATCA------------------------------------------------------------------------------CTAGTCTTTGSizeHit CountTotal NormTotal
No Reads
dp5
CCTTGCATTTTG------------------------------------------------------TTTTCATGTTTAAA-------------TGTCTATAAAGTATATATAATATATATTTC------------TGCATTTCTGTAATTTTACCTTTGTGGTTTGTATTTTTT----------------------------------------------------------------------------------------------------CTTTTTGTTTTTTTTTTTGTTTTCTCATTTATTTTCA--------------------------------------------------------------------------------------------TTGTTTGGTTTTGTTTAACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC----------------C-------------------------AGT-TGTT-------------------------------------------------------------------------CT----------------------------------------------------------------------------------TTTATTTATATACC------TA-------------------------------G----------------------------TACACTTTTGCATAAGTTTTCGTGTATAATAAT-----------------TATTTATTAATAAT---AATGTA------------------ATGCA------------------------------------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACATTGATTTT------TTGTA-------------------------------TAGATAT---------TTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---T--------ATATTA-----------ATTT-------CTTGT---------------------------------------------ATAGATATTTTTTTTATATTAT---------------------------------------------TTTCTTGTATAGATATTTTTTGGTATATTAAATTTATTAGATTCATTTTTGTTA-------------------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------ATTA-------------------------------------------------------------ATT----------------------------------------------------------------------TTTTTAT----ATTAATTATTAT-----------------TATTATTTATTGTT---ATTATT------------------ATTAAG------TTTTTATTATATT-AATTG--------------TT-CTATT----------------------AAT---------------------------------------------------------TTGTTTTTTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATTTAAAATTGAACGA-----------------------------------------------GGAATT-----------------------------------------------------------------------------------------------------------------------------------------------------AACCGACCGCACAACCGCTTAC-------------------------------------------------------------------------------------------------------------------CAT---------------------------------------------------------AAAAATAAAAATAACATAAAATTAAACATAACTTTAGCTTATTTACATATATAAT---------------------------------------------TTACTTGCACTTTTCTCA--------------GCTGATGT----------------------------------------------------------------------CAATCGATTGTTCAATATCC-------------AA----------------T-------------------------ATT-TATT-------------------------------------------------------------------------TA----------------------------------------------------------------------------------TTTATTTATTTATTTATTTATTTA------------------------------------TTTATTTATTTATTTATTTATT--------------------------------------------------TATTTATTTAT------------------------------------------------------------------------------------------TTATTT------ATT----------------------------------------------------------------TATTTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCA--------------GCTGATGT----------------------------------------------------------------------CAATCGATTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25100.50502030
..TTAAAATTGAACGA-----------------------------------------------GGAATT-----------------------------------------------------------------------------------------------------------------------------------------------------AACCGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.25101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCA--------------GCTGATGT----------------------------------------------------------------------CAATCGATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24100.20200020
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTTTTCTCA--------------GCTGATGT----------------------------------------------------------------------CAATCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2890.11101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------GCTGATGT----------------------------------------------------------------------CAATCGATTGTTCAATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2790.11101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCA--------------GCTGATGT----------------------------------------------------------------------CAATCGATTGTTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2890.11101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTTTTCTCA--------------GCTGATGT----------------------------------------------------------------------CAATCGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2990.11101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTTTTCTCA--------------GCTGATGT----------------------------------------------------------------------CAATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2790.11101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTTCTCA--------------GCTGATGT----------------------------------------------------------------------CAATCGATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2890.11100010
droVir3
ATATTTATATT------T-ATA-------------------------------TTTATAT---------TTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT---T--------ATATTT-----------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATATTTATATTTATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATTTATATTTATATTTATATTTATATTTATATTTATATTTATATTTATATTTATATTTATA----------TTTATA----------------------------------------TTTAT----------------------------------------------------------------------------------------ATTTA--TATTTATATTTATATTTATATTTCTACTATGTTGCTAGTAGGGTAATCAGAATTCAGCTTAATGAAAATTATTGTACTGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CTTGCCAGCTGAATAA--------------------------------------------------------------------------------------TATTTAAATATTAT-AATTTT----------TTTTCAAT---TAATTAA-----------------------------------------------------------------------------------------TTTTCGTTTATTTTT-TTTTTTTTTTTAACTTAACTTTTTATTTTTGTATTTATTTATTTATTTATTTTTATTATTTAATTTTTAT----TTTT-----------TT--------------T-TATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATTTATTTT----------------------------------------------------------------------TTTCCACTTTTGTAACTATTTATTTATTTTAGT-------TAT---------------TTAAT------------------TTTTAG------TA-----------------------------------------------------------------------------------------------------------------------------TTCTTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTTTAGTTTAT------T-----------------------------------------------------------------------------------------------------------------------------------------TT-------------TTTATCTTTCGTTTTGTTTTTTTTTCTCATTTTTTTTTTATTA----------------------------------TTTAGGATT-------------------------------------------------------------------TATACAATAACTTAACATTTGTTTTGC-----TCT---------------------------------------------------------TGGAATCGGAAATATACAATATTAAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---------------------------------------------------------------------------------ATTTCTTGTT---GCATTT------------------ATTTTG------TGTTTCTTTAGTTCACTGATTTTGCTTGT-------------------------------TGA----------------------------------------------------------------GTTGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:52 PM