ID:

dsi_7321

Coordinate:

3r:10747668-10747725 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-1.9	-1.8	-1.7

Flybase annnotation

Antisense to intron [3r_10742713_10749585_+]

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

mature

star

Sense Strand Reads

GGAACTATGGGTATTCGCTACATCAACCTCAGAGGAGGAATAGCTCATTTGTAAGTTGTATAAAATAAAAATAAAAAATAGAGGTCTAATATTCCCTTCCTTTTAAAGACTCAATCTCAACCCCATTACGGGAGTGATAACCATTAAACAGGCAGGTG ************************************************.............................(((((..............))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M053 female body	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.................................GGAGGATTAGCTCAGTTGGAAG.......................................................................................................	22	3	1	3.00	3	3	0	0	0	0	0	0
.................................GGAGGATTAGCTCAGTTGTGA........................................................................................................	21	3	1	1.00	1	0	1	0	0	0	0	0
...........................................CTCACTGGTAAGTTGTATAA...............................................................................................	20	2	1	1.00	1	0	0	1	0	0	0	0
.................................GGACGCATAGCTCAGTTGTA.........................................................................................................	20	3	2	0.50	1	0	0	0	1	0	0	0
.................................................TGTCAGTTGGATAAAAAAAAAA.......................................................................................	22	3	13	0.31	4	0	0	0	2	2	0	0
...................................AGGATTAGCTCAGTTGGAAG.......................................................................................................	20	3	5	0.20	1	1	0	0	0	0	0	0
........................................................................AAATAATAAAGGTCTAATA...................................................................	19	2	9	0.11	1	0	0	0	0	0	1	0
.......................................................TTGTATAAAATAAAA........................................................................................	15	0	9	0.11	1	0	0	0	0	1	0	0
...........................GTCAGAGGAGCCATAGCTC................................................................................................................	19	3	17	0.06	1	0	0	0	0	0	0	1
.........................................................................AATAATAAAGGTCTAATA...................................................................	18	2	20	0.05	1	0	0	0	0	0	1	0
....................................GGAATAGCTCAGTTG...........................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	1
.......................................................................................................................ACCCCGTGAGGGGAGTGA.....................	18	3	20	0.05	1	0	0	0	0	0	1	0
.................................................TGTAACTTGTATAAAAGA...........................................................................................	18	2	20	0.05	1	0	0	0	0	0	1	0
.................................GGAGGATTAGCTCAGT.............................................................................................................	16	2	20	0.05	1	0	0	0	0	1	0	0

Anti-sense strand reads

CCTTGATACCCATAAGCGATGTAGTTGGAGTCTCCTCCTTATCGAGTAAACATTCAACATATTTTATTTTTATTTTTTATCTCCAGATTATAAGGGAAGGAAAATTTCTGAGTTAGAGTTGGGGTAATGCCCTCACTATTGGTAATTTGTCCGTCCAC ************************************************.............................(((((..............))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	M053 female body	SRR902009 testis
................................................................................CTCCAGATTATAGGG...............................................................	15	1	2	0.50	1	1	0	0	0
...................................................................................CAGATTATAGAGGGAGGAA........................................................	19	3	9	0.22	2	2	0	0	0
...................................................................TTTTATTTTTTAGCTCTAGAGT.....................................................................	22	3	5	0.20	1	0	1	0	0
................................................................................................................................GCTTTCACTATTGGTGATTTG.........	21	3	6	0.17	1	0	0	1	0
.................................................................................................................TGGAGTTGCGGGAATGCCC..........................	19	3	7	0.14	1	0	1	0	0
................................................................................CTCCAGATTATAGAGGAAT...........................................................	19	3	8	0.13	1	1	0	0	0
....................................................................................ACATTATAAGGGAAG...........................................................	15	1	8	0.13	1	1	0	0	0
.............GAGCGATGAAGTTGGACT...............................................................................................................................	18	3	20	0.05	1	0	0	0	1
.........................................................................CCTTTGTCTCCAGATTATA..................................................................	19	3	20	0.05	1	1	0	0	0

Generated: 04/24/2015 at 10:51 AM