ID:

dsi_7311

 Coordinate:

2r:5297806-5298059 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5297370_5297805_-]; CDS [2r_5297370_5297805_-]; CDS [2r_5298060_5298192_-]; exon [2r_5298060_5298192_-]; intron [2r_5297806_5298059_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGGACAAGCGCAAGATATTGGAGCAGGTCATGGACAAAGAGACCTATAAGGTGGGGTCACAACTTCCCCTTGATTACACGTCCGAGTGCAGACTTCTTATCAGAGCTTAGAATATTTTATTTATTTTGGCTAAGATGCGTAGTGTAAACCTTATAGCACTCACGCACTAGCTAAGAAGGAACCATAGAAAGGGCACAGGTAGATCGCCTTTCACCAAGTCGAGTTCCCGCCCTTTTTTGTATTGTTTGTTAGGCCAATGCACTTGTTTACATACTTCGAGCTATATCATGTATTATTCCCACAGGTGGCGGTGAATCTCCTAGAGCGTTTTGGCGACAAGAAGCAGCTCCGCAT
**************************************************((((((..(((.......(((((.........((((((((.....((((.((((...((.((...........((((((((.((.((((((((((..........))))).)))))))))))))))..........((((((((...((....(((.(((.....))).)))...)).)))))))))).))...)))).))))....))))))))..........)))))........))).....))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
...............TATTGGAGCAGGTCATGGACAAAGA.......................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................CATGGACAAAGAGACCTATAAGGT.............................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................GTGGCGGTGTATTTCCTAGACC............................ 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................TTTCACGAAGTCGACTTC................................................................................................................................ 18 2 3 1.00 3 0 2 1 0 0 0 0 0 0
...................GGAGCAGGTCATGGACAAAGA.......................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................GACAAAGAGACCTATAAGGTGGCGGT........................................................................................................................................................................................................................................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTTTCACGAAGTCGACTTC................................................................................................................................ 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGGTCACAGGTAGAACACCT................................................................................................................................................. 20 3 2 0.50 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................................TACCACGGGTGACGGTGAA....................................... 19 3 7 0.14 1 0 0 0 0 0 0 1 0 0
.................................ACAACGAAAGCTATAAGGTG............................................................................................................................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 0 0 0 1 0
................................................................................................................................GCTAAGATCCGTAGTCGAA............................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................GTTTCCGCCCTTTTT..................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0
..................................................................................................ATAAGAGGTTAGAATA................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCCTGTTCGCGTTCTATAACCTCGTCCAGTACCTGTTTCTCTGGATATTCCACCCCAGTGTTGAAGGGGAACTAATGTGCAGGCTCACGTCTGAAGAATAGTCTCGAATCTTATAAAATAAATAAAACCGATTCTACGCATCACATTTGGAATATCGTGAGTGCGTGATCGATTCTTCCTTGGTATCTTTCCCGTGTCCATCTAGCGGAAAGTGGTTCAGCTCAAGGGCGGGAAAAAACATAACAAACAATCCGGTTACGTGAACAAATGTATGAAGCTCGATATAGTACATAATAAGGGTGTCCACCGCCACTTAGAGGATCTCGCAAAACCGCTGTTCTTCGTCGAGGCGTA
**************************************************((((((..(((.......(((((.........((((((((.....((((.((((...((.((...........((((((((.((.((((((((((..........))))).)))))))))))))))..........((((((((...((....(((.(((.....))).)))...)).)))))))))).))...)))).))))....))))))))..........)))))........))).....))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.......................................................................................................................................................................................................................................................................................................................ACTTAGAGGACCTCGCAAAAC...................... 21 1 1 2.00 2 2 0 0 0 0 0
........................................................................................................................................CGCTTCACATTTGGCATA........................................................................................................................................................................................................ 18 2 3 0.33 1 0 0 1 0 0 0
.................................................................GGGGTTCTAATGTGAAGGCT............................................................................................................................................................................................................................................................................. 20 3 3 0.33 1 0 1 0 0 0 0
.................................................................GGGGTTCTAATGTGAAGGC.............................................................................................................................................................................................................................................................................. 19 3 15 0.13 2 0 2 0 0 0 0
..........................................GGAGATTCGAGCCCAGTGT..................................................................................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................GTACATTATAAGGCTG.................................................... 16 2 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................TGGAATATCGTCAGTT............................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0
..................ACGTAGTCCAGTGCCTGTT............................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0
.........................................................................................TCGGAAGAATAGACTC......................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0
.................CACCTCGTCCAGTGCCTCTT............................................................................................................................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................TGAACTAGTGTATGAAG............................................................................. 17 2 20 0.05 1 0 0 0 1 0 0

Generated: 04/23/2015 at 12:16 PM