dsi_7303

CDS [2r_1270059_1270125_+]; exon [2r_1269943_1270125_+]; intron [2r_1270126_1271312_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GTTGACCTGCTCGGCATTACTAATAATGTTATTATTACTGAGCAACACAGGTGAGTAAGCATATTACAACCCTTTTTTTAACAGCAAAGAACTGCGTCGAACTGGAGGCCTTTGTTCAATGTGCTTATCCATCGCAGATTATTTATATATGTATGTCGTTTGTTCATCGCACATAATTTATTTTTCCGGTGGCGTTCACGTAGCCATATGCGTTAGTGTCGTATCTGCGTAATAAAACTTAAACGGATAA ************************************************(((((((((((((((((((.(((((.(((.((.(((......))))).)))..)))))...))))..)))))))))))((((((..((......(((....(((((((.........)).)))))...)))...))))))))...)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M053 female body	GSM343915 embryo	M023 head	M024 male body	SRR553485 Chicharo_3 day-old ovaries
............................................................................................................................................................................................................CATATGGTTTAGTGTCGTA...........................	19	2	3	1.00	3	3	0	0	0	0	0
.................................................................................................................................................................................................................GCGTTAGTGTCGTATCTGC......................	19	0	2	0.50	1	0	0	1	0	0	0
......................ATAATGTTATTATTACTGAGC...............................................................................................................................................................................................................	21	0	2	0.50	1	0	1	0	0	0	0
........GCTCGGCATTACTAATA.................................................................................................................................................................................................................................	17	0	2	0.50	1	0	0	0	0	0	1
.......................................GAGCAACACAGGTGAGTAAGC..............................................................................................................................................................................................	21	0	2	0.50	1	0	0	1	0	0	0
.....................AATAATGTTATTATTACTGAGCA..............................................................................................................................................................................................................	23	0	2	0.50	1	0	1	0	0	0	0
.........................................................................................................................................................................................................AGCCATATGCGTTAGTGTCGTATCTG.......................	26	0	2	0.50	1	0	0	0	0	1	0
.........................................................................................AACTGCGTCGAACTGGAGT..............................................................................................................................................	19	1	2	0.50	1	0	0	0	1	0	0
.............................................................................................................................................................................................................ATATGGTTTAGTGTCGTA...........................	18	2	7	0.43	3	3	0	0	0	0	0
............................................................................................................................................................................................................CATATGGGTGAGTGTCGTA...........................	19	2	3	0.33	1	1	0	0	0	0	0
...........................................................................................................................................................................................................CCATATGGTTGAGTGTCGTA...........................	20	3	9	0.11	1	1	0	0	0	0	0
...........................................................................................................................................................................................................ACATATGGTTTAGTGTCGTA...........................	20	3	17	0.06	1	1	0	0	0	0	0
.....................................................................................................CTGGAGTCCTGTGTTCA....................................................................................................................................	17	2	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................CATATGTTTGAGTGTCGTA...........................	19	3	20	0.05	1	1	0	0	0	0	0

CAACTGGACGAGCCGTAATGATTATTACAATAATAATGACTCGTTGTGTCCACTCATTCGTATAATGTTGGGAAAAAAATTGTCGTTTCTTGACGCAGCTTGACCTCCGGAAACAAGTTACACGAATAGGTAGCGTCTAATAAATATATACATACAGCAAACAAGTAGCGTGTATTAAATAAAAAGGCCACCGCAAGTGCATCGGTATACGCAATCACAGCATAGACGCATTATTTTGAATTTGCCTATT ************************************************(((((((((((((((((((.(((((.(((.((.(((......))))).)))..)))))...))))..)))))))))))((((((..((......(((....(((((((.........)).)))))...)))...))))))))...)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries
.........................................................TGGTATAATGTTGGGAGTA..............................................................................................................................................................................	19	3	15	0.07	1	1	0
................................................................ATGTTGGGAAATAAA...........................................................................................................................................................................	15	1	16	0.06	1	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:1270076-1270325 +	dsi_7303	GTTGACCTGCTCGGCATTACTAATAATGTTATTATTACTGAGCAACACAGGTGAGT---AAGCAT----------A---TTAC----------AACCCTTT------------------T--TTTA------ACAGCA-----AAGAACTGCGTCGAACTGGAGGCCTTTGTTCAATGTGCTTATCCATCGCAGAT-----TATTTATATATGTATGT-CGT-TTGTTCATCGCACATAATTTATTTTTCCGGTGG--CGTTCACGTAGCCATATGCGTTA-----------GTG--TCGTATCTGCGTAATAA-----------------AAC------TTAAACGGATAA
droSec2	scaffold_8033:387-636 +		GTTGACCTGCTCGGCATTACTAATAATGTTATTATTACTGAGCAACACAGGTGAGT---AAGCAT----------A---TTAC----------AACCCTTT------------------T--TTTA------ACAGCA-----ATGAACTGCGTCGAACTGGAGGCCTTTGTTCAATGTGCTTATCCATCGCAGAT-----TATTTATATATGTATGT-CGT-TTGTTCATCGCACATAATTTATTTTTCCGGTGG--CGTTCACGTAGCCATATGCGTTA-----------GTG--TCGTATCTGCGTAATAA-----------------AAC------TTAAACGGGTGA
dm3	chr2L:21573512-21573768 +		GTTGACCTGCTCGGCATTACTAATAATGTTATTTTTACTAAGCAGTACAGGTTAGT---G---------------------CCAAGCCAATTAAACCCTTT------------------T--TAAA------ACAGCA-----ATGAAATGCGTCGCATTGGAGGCCTTTGTTCAATGTGATAATACATCGCAGTTCTTTTTATATGTATATGTATGT-CGT-TTGTTCATCGCACATAATTTATTTTTCCGGTGC--CGTTCACGTCGCCATATGCGTTA-----------GTG--TCTTATCGGCGTAATAA-----------------GGT------GTAAACGGTTGA
droEre2	scaffold_4845:2989047-2989301 -		GTTGACCTGCTCGGCGTTACTAATAAT---ATTATTGCTAAGCAATGCAGGTGAGT---AAGCAT----------A---TGACAAGCTACGTAAACCGTTT------------------T--T-TA------TCAGCA-----AAGAATTGCGTCGCAC--------TTTGTTCAATGTGCTTATTCATCGCATTT-----TATTTATATT----TGT-CGT-TT-T---TCGCACGTAATTTATTTTTCGGGTCT--CGTTCATGTAACCATCTGGGTTAGTT-------AGGG--TCTTTTCTGCGTAATAG---GTA--GTAGGTTTAAAC------TAGAACG-TTGA
droYak3	2R:1297335-1297610 -		GTTGACCTGCTCGGCGTTACTAATAATATTATTATTGCTAAGCAATGCAGGTGAGT---AAGCAT----------A---TGAAAAGCTACGTAAACCGTTT------------------T--T-TTTTGTTAGCAGCA-----AAGAACTGCGTCGCACTGGATGCCTTTGTTCAATGTGCTTATTCATCGCAATT-----TATTTATATA----TGT-CGT-TTATTTG---CACGTCACTCATTTTCCCGGTCG--CGTTCACGTAACTATCTGGATTAGTA-------AGTG--TGTTTTCTGTGGAATACATTGTA--AAAGCTTTTAAG------AAGAAC-GTTGA
droEug1	scf7180000409752:33519-33765 +		GTTGACATACTGGACATT------------GCTAATGTTAAGTGGTGCAGGTAAGT---GAGATA----------A---TAACGAACTACGCCAACCCTTT------------------T--T-TA------GCAACGA-AAAAAAAACTGCGTCGCGCTGGAAGCCTTTGTTCAATGTGCTTATTCATCGCCAAT-----TATT----------TGT-CGC-TTATTCGCCTCCCGTCATTCACCATCTCTCTCG--CTCTCACGTAACCA-CAGGGTTAGTCCGATTGTAGTG--TTTTATCTGGTGGAAAA---TTT--------------------TTAAAAGG----
droBia1	scf7180000302422:3557926-3558156 -		GCTGCTGTGCTCGGCCCT------------GCTGATGCTAAATGGCGCAGGTGAGT---GGGCAA------A---GTGATGGAAAACTGCGGAAACCCTTT------------------ATTTTCG------CCAGCG----AAAAAACTGCGCCGCGCTGGAGGCCTTTGTTCAATGTGCTTATTCATCGCAAAT-----TATTTATATT----TGT-CGT-TTACTCGCCGCCCCTCGATTGCCGTCTCGCTCG--CGCTCACGTAACCAGCTGGGCCAGTGCGGTTGTTGAG--T------------------------------------------------------
droTak1	scf7180000413920:160935-161177 +		GTTGATATGCTCGGCCCT------------GCTAATGCTAAGTGGCGCAGGTGAGT---GGGCAA----------ATGGTGTAAAACTACGGAAACCTTTT------------------T--TTTG------CCAGCGA--AAAAAAACTGCGTCGCGCTGGAGGCCTTTGTTCAATGTGCTTATTCATCGCAAAT-----TATTTATATT----TGT-CGC-TTACCCGCCGCCCCCCATTCGCCGTCTCGCTCG--CGCTCACGTAACCAGCTGGGCCCGTCTGATTGTAGTG--TTTTATCTGCGAAA-----------------------------------------
droEle1	scf7180000490970:1108637-1108877 -		ATTGACCTGCTCAGCATT------------GCTAATGCTAAGTGGCGCAGGTGAGT---GAGCAA----------A---TGACAAACCTAGCAAACCCTTT------------------G--C-TT------ACAGCAACAAAAAAAACTGCGTCGTTCTGGAGGCCTTTGTTCATTGTGCTTATTCATCGCAAAT-----TATTTATATT----TGC-CGT-TTATCTGCCGCTCTTCACTCGCCATCTCGCTCG--CGCTCACGTAACCAGCTGGGACAGTT----TGTAGTG--TTTTATCTGCGAAAAAA-----------------A--------------------
droRho1	scf7180000779398:4391-4548 +		GTTGACCTGCTCGGCATT------------GCTAATGCTAAGTGGCGCAGGTGAGT---GGACAA----------A---TGACATACTACGCGAACCCTTT------------------A--C-TT------CCATCG----AAAAAACTGCGTCGCGC-GGAGGCCTTTGTTCAATATGCCATTTCATCGCAAAT-----TATTTATATT----TGT-CGT-C-ATTCG--------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000452378:29414-29674 +		GTTGACCTGCTCGGCACT------------ATTATTGCTCAGTGGGGCAGGTGAGT---AAA-AT----------A---CGACGAACTACGCGAACTCTTT------------------T--T-TC------GCAGCCA--AAAAAAACTGCGTCGCGCTGTATGCCTTTGTTTAATGTGCTTATTCATCGCAAAT-----TATTTATACT----TGT-CGT-TTATTCGCTAACTGTTACTCGCCGTCTCGCTCG--CGCTCACGTAACCAGCTGGGTTAGTTCGA----AGTGTTTTTTATCTGCGGAAAA----GTAAAAA-------AAGGAAAACAAGTACG-----
droAna3	scaffold_12916:9195013-9195256 +	dan_612	GGTGATATGCACGGCACT------------TTTAATGCTGAGTGGATCAGGTGAGATATGAGAAAAAAAAAAGAAA---CGAGAAACTACACGACCCCTGC------------------G--C-TC------CCCTTA----AATAAACTGCGTCGCACTGGAGGCCTTTGTTCAATTTGCTTATTCATCGCAAAT-----TATTT-TATT----TTT-CGT-G------------------TGCCATCTCGCTTA--CGCTCACGTAACCAGCTGT-----------TGT-GCT--TTTTATCTGCGAAAAAA---ATA--ACA-----AAGC------ACGGGCGATTAA
droBip1	scf7180000396535:1754114-1754351 +		GGTGATATGCACGGCACT------------GTTAATGCTGAGTGGATCAGGTGAGATATGAA-AA----------A---CGAGAAACTACGTGACCCCTGC------------------A--C-TCC---CCCCCTTA----AATAAACTGCGTCGCACTGGAGGCCTTTGTTCAATTTGCTTATTCATCGCAAAT-----TATTT-TATT----TTT-CGT-G------------------TGCCATCTCGCTTA--CGCTCACGTAACCAGCTGT-----------TGT-GCT--TTTTATCTGCAAAATAAA--ATAAAAA-------AACAAAAGCACGGGCG-----
dp5	4_group4:3541277-3541494 +		AGTG--CTGCTAGGCA-------CAACATTGCTATTGCTGAGCAGCGCAGGTGAGT---G--CAA----------A-----AGAAACTACTTGAACCCGAACCCATCGGCCCCGTAGACACC---CC---ACTCACC-----ATTAAACTGCGTCGCACTGGAAGCCTTTGTTCAATTTGCTTATTCATCGCGAAT-----TATTTATATT----TTTTTGGTT-----------------TTGCTGTCTCGCTTGTTCGCGCACGTAACCCGCTGT-----------T--TGTG--T------------------------------------------------G-----
droPer2	scaffold_10:2569121-2569322 +		AGTG--CTGCTAGGCA-------CAACATTGCTATTGCTGAGCAGCGCAGGTGAGT---G--CAA----------A-----AGAAACTACTTGAACCCGAACCCAACGGCCCCGTAGACACC---CC---ACTCACC-----ATTAAACTGCGTCGCACTGGAAGCCTTTGTTCAATTTGCTTATTCATCGCGAAT-----TATTTATATT----TTT-TGG-TT----------------TTGCTGTCTCGCTTGTTCGCGCACGTAA-----------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GTTGACCTGCTCGGCATTACTAATAATGTTATTATTACTGAGCAACACAGGTGAGT---AAGCAT----------A---TTAC----------AACCCTTT------------------T--TTTA------ACAGCA-----AAGAACTGCGTCGAACTGGAGGCCTTTGTTCAATGTGCTTATCCATCGCAGAT-----TATTTATATATGTATGT-CGT-TTGTTCATCGCACATAATTTATTTTTCCGGTGG--CGTTCACGTAGCCATATGCGTTA-----------GTG--TCGTATCTGCGTAATAA-----------------AAC------TTAAACGGATAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................................................................................................GCGTTA-----------GTG--TCGTATCTGC.............................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................ATAATGTTATTATTACTGAGC.....................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........GCTCGGCATTACTAATA.......................................................................................................................................................................................................................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................GAGCAACACAGGTGAGT---AAGC.................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................AATAATGTTATTATTACTGAGCA....................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................AGCCATATGCGTTA-----------GTG--TCGTATCTG..............................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................AACTGCGTCGAACTGGAGT...........................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GTTGACCTGCTCGGCATTACTAATAATGTTATTATTACTGAGCAACACAGGTGAGT---AAGCAT----------A---TTAC----------AACCCTTT------------------T--TTTA------ACAGCA-----ATGAACTGCGTCGAACTGGAGGCCTTTGTTCAATGTGCTTATCCATCGCAGAT-----TATTTATATATGTATGT-CGT-TTGTTCATCGCACATAATTTATTTTTCCGGTGG--CGTTCACGTAGCCATATGCGTTA-----------GTG--TCGTATCTGCGTAATAA-----------------AAC------TTAAACGGGTGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...GACCTGCTCGGCATTACT...........................................................................................................................................................................................................................................................................................................................................	18	2	1.00	2	2	0	0	0
..........................TGTTATTATTACTGAGCAACA.................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0
...........................GTTATTATTACTGAGCAA...................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0
...............................................................................................................................................................................................................................................ATTTATTTTTCCGGTGG--CGTT..........................................................................................	21	2	0.50	1	1	0	0	0
....................................ACTGAGCAACACAGGTGAGT---AAGC.................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	1	0
.............................................................................................AACCCTTT------------------T--TTTA------ACAGCA-----.................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0
...GACCTGCTCGGCATTACTA..........................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0
.........................ATGTTATTATTACTGAGC.....................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0
.........................ATGTTATTATTACTGAGCAA...................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	1	0
........................AATGTTATTATTACTGAGCAA...................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0

dm3

GTTGACCTGCTCGGCATTACTAATAATGTTATTTTTACTAAGCAGTACAGGTTAGT---G---------------------CCAAGCCAATTAAACCCTTT------------------T--TAAA------ACAGCA-----ATGAAATGCGTCGCATTGGAGGCCTTTGTTCAATGTGATAATACATCGCAGTTCTTTTTATATGTATATGTATGT-CGT-TTGTTCATCGCACATAATTTATTTTTCCGGTGC--CGTTCACGTCGCCATATGCGTTA-----------GTG--TCTTATCGGCGTAATAA-----------------GGT------GTAAACGGTTGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................................................................TATCGGCGTAATAA-----------------GGT------GTA.........	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AATAATGTTATTTTTACTAAGCAGT..................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGC--CGTTCACGTCGCCATATGCGTTA-----------G...........................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATATGCGTTA-----------GTG--TCTTATCGGCG............................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................AATGCGTCGCATTGGAGGCCTTTG.....................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................G---------------------CCAAGCCAATTAAACCC..............................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GTTGACCTGCTCGGCATT..............................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GC--CGTTCACGTCGCCATA..............................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................TT------------------T--TAAA------ACAGCA-----ATGAAATGCGTCGC...................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................G--TCTTATCGGCGTAATAA-----------------G....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TATCGGCGTAATAA-----------------GGT------GTAAACGGTATC	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ATGCGTCGCATTGGAGGCG.........................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GTTGACCTGCTCGGCGTTACTAATAAT---ATTATTGCTAAGCAATGCAGGTGAGT---AAGCAT----------A---TGACAAGCTACGTAAACCGTTT------------------T--T-TA------TCAGCA-----AAGAATTGCGTCGCAC--------TTTGTTCAATGTGCTTATTCATCGCATTT-----TATTTATATT----TGT-CGT-TT-T---TCGCACGTAATTTATTTTTCGGGTCT--CGTTCATGTAACCATCTGGGTTAGTT-------AGGG--TCTTTTCTGCGTAATAG---GTA--GTAGGTTTAAAC------TAGAACG-TTGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.TTGACCTGCTCGGCGTTACTA..........................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	0	0	1	0
..TGACCTGCTCGGCGTTACTA..........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..............................ATTATTGCTAAGCAATGCAGT.............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...GACCTGCTCGGCGTTACTAAT........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..TGACCTGCTCGGCGTTACTAAT........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...GACCTGCTCGGCGTTACTA..........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
......CTGCTCGGCGTTACTAAT........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
....ACCTGCTCGGCGTTACTA..........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..........TCGGCGTTACTAATAAT---ATTAT.............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
GTTGACCTGCTCGGCGTTACT...........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
......................ATAAT---ATTATTGCTAAGCAATGCAGT.............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
GTTGACCTGCTCGGCGTT..............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................A------TCAGCA-----AAGAATTGCGTCGC...................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0

droYak3

GTTGACCTGCTCGGCGTTACTAATAATATTATTATTGCTAAGCAATGCAGGTGAGT---AAGCAT----------A---TGAAAAGCTACGTAAACCGTTT------------------T--T-TTTTGTTAGCAGCA-----AAGAACTGCGTCGCACTGGATGCCTTTGTTCAATGTGCTTATTCATCGCAATT-----TATTTATATA----TGT-CGT-TTATTTG---CACGTCACTCATTTTCCCGGTCG--CGTTCACGTAACTATCTGGATTAGTA-------AGTG--TGTTTTCTGTGGAATACATTGTA--AAAGCTTTTAAG------AAGAAC-GTTGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...GACCTGCTCGGCGTTACTA..........................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
GTTGACCTGCTCGGCGTTACT...........................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
...GACCTGCTCGGCGTTACTAAT........................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
GTTGACCTGCTCGGCGTTACTA..........................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...GACCTGCTCGGCGTTACTAATA.......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................G--CGTTCACGTAACTATCTGGATTAGT.....................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...GACCTGCTCGGCGTTACT...........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
GTTGACCTGCTCGGCGTTACTAAT........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...........................ATTATTATTGCTAAGCAATGCA...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TCACTCATTTTCCCGGTCG--CG............................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TATA----TGT-CGT-TTATTTG---CACG...................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................ATTATTATTGCTAAGCAATGCAGTGT...........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TAGTA-------AGTG--TGTTTTCTGTGG...........................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................AATATTATTATTGCTAAGCAATGCAGT.............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
GTTGACCTGCTCGGCGTT..............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GTAACTATCTGGATTAGTA-------AGTG--TG.....................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CATTGTA--AAAGCTTTTAAG------AAGAAC-GT...	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GTTCAATGTGCTTATTCAT...................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................AACTATCTGGATTAGTA-------AGTG--TGT....................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
GTTGACCTGCTCGGCGTTACTAATA.......................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GTTGACATACTGGACATT------------GCTAATGTTAAGTGGTGCAGGTAAGT---GAGATA----------A---TAACGAACTACGCCAACCCTTT------------------T--T-TA------GCAACGA-AAAAAAAACTGCGTCGCGCTGGAAGCCTTTGTTCAATGTGCTTATTCATCGCCAAT-----TATT----------TGT-CGC-TTATTCGCCTCCCGTCATTCACCATCTCTCTCG--CTCTCACGTAACCA-CAGGGTTAGTCCGATTGTAGTG--TTTTATCTGGTGGAAAA---TTT--------------------TTAAAAGG----	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCTGCTGTGCTCGGCCCT------------GCTGATGCTAAATGGCGCAGGTGAGT---GGGCAA------A---GTGATGGAAAACTGCGGAAACCCTTT------------------ATTTTCG------CCAGCG----AAAAAACTGCGCCGCGCTGGAGGCCTTTGTTCAATGTGCTTATTCATCGCAAAT-----TATTTATATT----TGT-CGT-TTACTCGCCGCCCCTCGATTGCCGTCTCGCTCG--CGCTCACGTAACCAGCTGGGCCAGTGCGGTTGTTGAG--T------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GTTGATATGCTCGGCCCT------------GCTAATGCTAAGTGGCGCAGGTGAGT---GGGCAA----------ATGGTGTAAAACTACGGAAACCTTTT------------------T--TTTG------CCAGCGA--AAAAAAACTGCGTCGCGCTGGAGGCCTTTGTTCAATGTGCTTATTCATCGCAAAT-----TATTTATATT----TGT-CGC-TTACCCGCCGCCCCCCATTCGCCGTCTCGCTCG--CGCTCACGTAACCAGCTGGGCCCGTCTGATTGTAGTG--TTTTATCTGCGAAA-----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATTGACCTGCTCAGCATT------------GCTAATGCTAAGTGGCGCAGGTGAGT---GAGCAA----------A---TGACAAACCTAGCAAACCCTTT------------------G--C-TT------ACAGCAACAAAAAAAACTGCGTCGTTCTGGAGGCCTTTGTTCATTGTGCTTATTCATCGCAAAT-----TATTTATATT----TGC-CGT-TTATCTGCCGCTCTTCACTCGCCATCTCGCTCG--CGCTCACGTAACCAGCTGGGACAGTT----TGTAGTG--TTTTATCTGCGAAAAAA-----------------A--------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTTGACCTGCTCGGCATT------------GCTAATGCTAAGTGGCGCAGGTGAGT---GGACAA----------A---TGACATACTACGCGAACCCTTT------------------A--C-TT------CCATCG----AAAAAACTGCGTCGCGC-GGAGGCCTTTGTTCAATATGCCATTTCATCGCAAAT-----TATTTATATT----TGT-CGT-C-ATTCG--------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTTGACCTGCTCGGCACT------------ATTATTGCTCAGTGGGGCAGGTGAGT---AAA-AT----------A---CGACGAACTACGCGAACTCTTT------------------T--T-TC------GCAGCCA--AAAAAAACTGCGTCGCGCTGTATGCCTTTGTTTAATGTGCTTATTCATCGCAAAT-----TATTTATACT----TGT-CGT-TTATTCGCTAACTGTTACTCGCCGTCTCGCTCG--CGCTCACGTAACCAGCTGGGTTAGTTCGA----AGTGTTTTTTATCTGCGGAAAA----GTAAAAA-------AAGGAAAACAAGTACG-----	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GGTGATATGCACGGCACT------------TTTAATGCTGAGTGGATCAGGTGAGATATGAGAAAAAAAAAAGAAA---CGAGAAACTACACGACCCCTGC------------------G--C-TC------CCCTTA----AATAAACTGCGTCGCACTGGAGGCCTTTGTTCAATTTGCTTATTCATCGCAAAT-----TATTT-TATT----TTT-CGT-G------------------TGCCATCTCGCTTA--CGCTCACGTAACCAGCTGT-----------TGT-GCT--TTTTATCTGCGAAAAAA---ATA--ACA-----AAGC------ACGGGCGATTAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............CACT------------TTTAATGCTGAGTGGA..................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................TTTAATGCTGAGTGGATCAGTC............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
GGTGATATGCACGGCACT------------T.................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........GCACGGCACT------------TTTAATGCTGAGTGGATC................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.GTGATATGCACGGCACT------------TTTAAT............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...GATATGCACGGCACT------------TTTAAT............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................AAACTGCGTCGCACTGGAGGC..........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................................................AAAAAAAAGAAA---CGAGAA...........................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0
.......................................................ATATGAGAAAAAAAAAAGA......................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	1
.................................................................AAAAAAAGAAA---CGAGAAC..........................................................................................................................................................................................................................................................................	18	15	0.07	1	0	1	0	0	0	0

droBip1

GGTGATATGCACGGCACT------------GTTAATGCTGAGTGGATCAGGTGAGATATGAA-AA----------A---CGAGAAACTACGTGACCCCTGC------------------A--C-TCC---CCCCCTTA----AATAAACTGCGTCGCACTGGAGGCCTTTGTTCAATTTGCTTATTCATCGCAAAT-----TATTT-TATT----TTT-CGT-G------------------TGCCATCTCGCTTA--CGCTCACGTAACCAGCTGT-----------TGT-GCT--TTTTATCTGCAAAATAAA--ATAAAAA-------AACAAAAGCACGGGCG-----	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGTG--CTGCTAGGCA-------CAACATTGCTATTGCTGAGCAGCGCAGGTGAGT---G--CAA----------A-----AGAAACTACTTGAACCCGAACCCATCGGCCCCGTAGACACC---CC---ACTCACC-----ATTAAACTGCGTCGCACTGGAAGCCTTTGTTCAATTTGCTTATTCATCGCGAAT-----TATTTATATT----TTTTTGGTT-----------------TTGCTGTCTCGCTTGTTCGCGCACGTAACCCGCTGT-----------T--TGTG--T------------------------------------------------G-----	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............A-------CAACATTGCTATTGCTGAGC.....................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	0	8	0	0	0	0	1	0	0	0
...............A-------CAACATTGCTATTGCTGAGCAGC..................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	4	0	0	0	0	0	0	0	0
...........................ATTGCTATTGCTGAGCAGC..................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..........................CATTGCTATTGCTGAGCAGC..................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	1	0	0	0	0	0	0	0
........................................................................................ACTTGAACCCGAACCCATCGG...................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................GCTATTGCTGAGCAGCGCAGG.............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................ACTGCGTCGCACTGGAAGCCT........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............CA-------CAACATTGCTATTGCTGAGC.....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................A----------A-----AGAAACTACTTGAACCCGA............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................TTGCTATTGCTGAGCAGC..................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............CA-------CAACATTGCTATTGCTGAGCA....................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................TGAGCAGCGCAGGTGAGT---G--C.................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................AACATTGCTATTGCTGAGCA....................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......TGCTAGGCA-------CAACATTGCT...............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................AGCAGCGCAGGTGAGT---G--CA................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........................ACATTGCTATTGCTGAGCAGC..................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................GAACCCGAACCCATCGGCCCC...............................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................CAACATTGCTATTGCTGAGCAGCGC................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................ATT----TTTTTGGTT-----------------TTGCTGTCT......................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........CTAGGCA-------CAACATTGCTATTGCTGAGC.....................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................TGAACCCGAACCCATCGGCCC................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CGTAACCCGCTGT-----------T--TGTG--T------------------------------------------------G-----	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................G--CAA----------A-----AGAAACTACTTGAACCC..............................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................AACATTGCTATTGCTGAGCAGC..................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................GCTATTGCTGAGCAGCGCA...............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TGTTCGCGCACGTAACCCGC..............................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................C-----ATTAAACTGCGTCGCACTGGAA............................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..............CA-------CAACATTGCTATTGCTGAG......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................AACATTGCTATTGCTGAGC.....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................GCTATTGCTGAGCAGCGCAGT.............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......TGCTAGGCA-------CAACATTGCTA..............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TCGCTTGTTCGCGCACGTAAC..................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................GCTATTGCTGAGCAGCGCAGTC............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........................ACATTGCTATTGCTGAGCAGCGC................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................CTGAGCAGCGCAGGTGAGT---G--C.................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................ATTGCTGAGCAGCGCAGTCC...........................................................................................................................................................................................................................................................................................................	20	7	0.57	4	0	3	0	0	0	1	0	0	0	0
..................................TTGCTGAGCAGCGCAGTC............................................................................................................................................................................................................................................................................................................	18	8	0.13	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGTG--CTGCTAGGCA-------CAACATTGCTATTGCTGAGCAGCGCAGGTGAGT---G--CAA----------A-----AGAAACTACTTGAACCCGAACCCAACGGCCCCGTAGACACC---CC---ACTCACC-----ATTAAACTGCGTCGCACTGGAAGCCTTTGTTCAATTTGCTTATTCATCGCGAAT-----TATTTATATT----TTT-TGG-TT----------------TTGCTGTCTCGCTTGTTCGCGCACGTAA-----------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................ATTGCTGAGCAGCGCAGT.............................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
..............................GCTATTGCTGAGCAGCGCA...............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..........................CATTGCTATTGCTGAGCAGC..................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.................................ATTGCTGAGCAGCGCAGTC............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
............GGCA-------CAACATTGCTATTGCTGA.......................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
............................TTGCTATTGCTGAGCAGCGCAGGTGAG.........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...............A-------CAACATTGCTATTGCTGAGCAGCGCA...............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.......................CAACATTGCTATTGCTGAGCAGC..................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
........................AACATTGCTATTGCTGAGC.....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.................................ATTGCTGAGCAGCGCAGTCC...........................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	1	0

dsi_7303

2r:1270126-1270275 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads