ID:

dsi_7286

 Coordinate:

3l:11830838-11830987 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-10.0 -9.8 -9.3 -9.1

Flybase annnotation

five_prime_UTR [3l_11830758_11830837_+]; exon [3l_11830758_11830837_+]; intron [3l_11830838_11831899_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGTCTGGCAGTATAAAATTAGCGAAGATTTTTTTCCCGTACTGATAAAAGGTACTTTCCTGCTAAATCTGACTCAAAAACAGATTAAATAATAAACGGAAATGAGAAACGCAAGCGTGATTAAAAGAAATTCATCATTCGTATAAAATGTGATGTTTTCTTGTGACTTATAGAAGTATAACAAAAAAAGTAAATATCATTTAAGAAGGCTAGACACAAATGCGCAGTTTACTTGCAATTAATCGGTTTTT
************************************************************************************************....((.....................((((((..((((((...........)))))).))))))))*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O001
Testis
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M053
female body
 O002
Head
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
.........................GATTTTTTTCCCGTACTGATA............................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................GGAAATGAGAAACGCAAGCGT..................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................ATAATAAACGGAAATGAGAAAC............................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CGTATAAAATGTGATGTTTTCTTGT....................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................GCGAAGATTTTTTTCCCGTA.................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TCATTTAAGAAGGCTAGAC.................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................TTCTTGTGACTTATAGAAGG.......................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................GTACTTTCCTGCTAAATCTGACT................................................................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................AACGGAAATGAGAAACGC........................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................TAAACGGAAATGAGAAACG............................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................CTTTCCTGCTAAATCTGACTC................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................AACTGATAAAAGGTACT................................................................................................................................................................................................... 17 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.......................................ACTGATAAAAGGTACTCT................................................................................................................................................................................................. 18 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................TGAACGGAGGTGAGAAACGCA.......................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
.......................................ACAGATAAAAGGTAC.................................................................................................................................................................................................... 15 1 8 0.25 2 0 0 0 2 0 0 0 0 0 0 0
........................................CAGATAAAAGGTACT................................................................................................................................................................................................... 15 1 15 0.20 3 0 0 0 3 0 0 0 0 0 0 0
............................................................................................GGACGGAAATGAGAAGCGCAA......................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................AAGCGTGATTATAAAAAAT........................................................................................................................ 19 2 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................GCGTAGGTTAGTTGCAATTA.......... 20 3 17 0.12 2 0 0 0 0 0 0 0 2 0 0 0
..................................................................................................................................................ATTTGATGATTTCTTGTGA..................................................................................... 19 2 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0
........................................................................................TTATAAACGGATAAGAGAAA.............................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...............................TTTACCGTACTGATGA........................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
........................................CGGATAAAAGGTACCT.................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCAGACCGTCATATTTTAATCGCTTCTAAAAAAAGGGCATGACTATTTTCCATGAAAGGACGATTTAGACTGAGTTTTTGTCTAATTTATTATTTGCCTTTACTCTTTGCGTTCGCACTAATTTTCTTTAAGTAGTAAGCATATTTTACACTACAAAAGAACACTGAATATCTTCATATTGTTTTTTTCATTTATAGTAAATTCTTCCGATCTGTGTTTACGCGTCAAATGAACGTTAATTAGCCAAAAA
***************************************************************************************....((.....................((((((..((((((...........)))))).))))))))************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
........................................................................AGTGGTTGTCTAATTTATTA.............................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................TTGTTTTTATCCTTTATTGTAAAT................................................ 24 3 1 1.00 1 0 1 0 0 0 0
............................................TTTTTCGATGAAAGGACG............................................................................................................................................................................................ 18 2 9 0.67 6 3 0 3 0 0 0
...........................................TTTTTTCGATGAAAGGACG............................................................................................................................................................................................ 19 2 4 0.50 2 0 0 2 0 0 0
...................................................................................................................................GTAGTAACCATATTTT....................................................................................................... 16 1 2 0.50 1 0 0 0 1 0 0
.................................................................................................................................................................................................AGAGTAAATTCTTCC.......................................... 15 1 16 0.13 2 0 0 0 0 2 0
............................................TTTTTCAATGAAAGGACG............................................................................................................................................................................................ 18 2 16 0.06 1 0 0 1 0 0 0
.............................................................................................................................................................................................................GCCGATCTGTGTTGA.............................. 15 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 10:38 AM