ID:

dsi_7282

 Coordinate:

3l:16219684-16219833 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAAGCACAGCTCTTTTCGCGGCCATCCAGGCAAATATCACATGAACTTAGGTAACAATCACAAAAACTTCAACACACCATCCAAAAAAAAAAGTAGAAAATTCCCATGTAAAGTCCGCATGAGAAGTGTCATTCTTAATAATTAAAGAGCGGTTTCCATTCGATGATTGGGGTATTTTCGTTATACATATATTGCACGATGATATTGGGGGTTTATAAACAGTGATGAGAAGGCATATGTTCTTGGCATA
**************************************************.............................................(((((((((((......((.((.(((.(((.(((...((((........))))))).))).))).))))...))))).)))))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body		 GSM343915
embryo
..AGCACAGCTCTTTTCGCGGCC................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................TAAATAAAGAGCGGCTCCCATT.......................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................TCACAAAAACCTCAACA................................................................................................................................................................................ 17 1 3 0.33 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................AATAAAGAGCGGCTCCCATT.......................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0
....................................TCACATGAACTTGGG....................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 1 0 0 0 0 0
.............................................................................................................AAAGTTCGCATGAGA.............................................................................................................................. 15 1 10 0.10 1 0 0 0 0 0 1 0 0 0
..................................TATCACAGGAACTTCGG....................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................GATATTGGGGGTTGACACA............................... 19 3 11 0.09 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................TAATTAAAGAGCGGGTA............................................................................................... 17 2 11 0.09 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGATATTGGGTGTTTACAC................................ 19 3 13 0.08 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................ATGATTGGGGCATTTT........................................................................ 16 1 14 0.07 1 0 0 0 0 1 0 0 0 0
...................................................................TACAGCATACCATCCAAAAA................................................................................................................................................................... 20 3 15 0.07 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GGGAGTTTATACACTGTGA......................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................TGAAGAGAAGGCATA............. 15 1 19 0.05 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

GTTCGTGTCGAGAAAAGCGCCGGTAGGTCCGTTTATAGTGTACTTGAATCCATTGTTAGTGTTTTTGAAGTTGTGTGGTAGGTTTTTTTTTTCATCTTTTAAGGGTACATTTCAGGCGTACTCTTCACAGTAAGAATTATTAATTTCTCGCCAAAGGTAAGCTACTAACCCCATAAAAGCAATATGTATATAACGTGCTACTATAACCCCCAAATATTTGTCACTACTCTTCCGTATACAAGAACCGTAT
**************************************************.............................................(((((((((((......((.((.(((.(((.(((...((((........))))))).))).))).))))...))))).)))))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..............................................................TTTTGAGGTGGTGTAGTAGGT....................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
..................................ATAGTGTAATTGAAT......................................................................................................................................................................................................... 15 1 20 0.10 2 0 2 0 0 0
.........................................................AGTGTTTGTGAAGTT.................................................................................................................................................................................. 15 1 20 0.10 2 0 0 0 2 0
.................................................................TGAAGTTGTCTGGTAGTTT...................................................................................................................................................................... 19 2 11 0.09 1 0 0 1 0 0
.......................................................GTAGTGTTTGTGAAGTTG................................................................................................................................................................................. 18 2 13 0.08 1 0 1 0 0 0
....................CGGGAGGTCCGTTTA....................................................................................................................................................................................................................... 15 1 16 0.06 1 0 0 1 0 0
...........................................................................................................CTTTTCGGGCGTACTCT.............................................................................................................................. 17 2 17 0.06 1 0 0 0 0 1

Generated: 04/24/2015 at 03:14 AM