dsi_7258

five_prime_UTR [3l_1698932_1699016_-]; exon [3l_1698932_1699016_-]; intron [3l_1699017_1705128_-]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TATTACGAAATAAGAATGAAATATAACATCAACGTTGAGGAGAGTAAAGCCTGTAGTACGCTAGTCAGCCATTCCGTTTCATGATTTTGTGTTTCCCAATTTACGAATGACCCAACAATTAAGTAATTGACTGATTGCGTTTGTATTGAAGCTGATTAAACCGAATTTAACTAAGTGTTCCCCCTTCATTTTCTTTACAGTTGGGCACGGTCAAACATTTGATGAAGGGGAAGCAGCAGCAGCAGTATTA ************************************************.......((((.((((((.(((((.((....((.............))....)))))))......(((((....))))).))))))))))(((((..((((.(((.......((((..........)))).....))).))))..)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	M053 female body	M024 male body	SRR553487 NRT_0-2 hours eggs	M023 head	SRR618934 dsim w501 ovaries
.........................................GAGTAAAGCCTGTAGTACGCTAGTCAG......................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................CAAACATTTGATGAAGGGGAAGC................	23	0	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................GGTCAAACATTTGATGAAGGGGA...................	23	0	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................ATGAAGGGGAAGCAGCAGCAGCAG.....	24	0	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................TGATGAAGGGGAAGCAGCAGCAGC.......	24	0	1	1.00	1	1	0	0	0	0	0
..........................................AGTAAAGCCTGTAGTACGCTAGTCAG......................................................................................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0
...........................................GTAAAGCCGGTCGTACAC.............................................................................................................................................................................................	18	3	20	0.10	2	0	0	0	0	2	0
..................................................................................................................................................TCAAGCTGACTAAACCGATT....................................................................................	20	3	10	0.10	1	0	0	0	1	0	0
........................AACATCAACGTTCAAGA.................................................................................................................................................................................................................	17	2	17	0.06	1	0	0	0	1	0	0
..................................................................AGCCATTCCGTTTCG.........................................................................................................................................................................	15	1	19	0.05	1	0	0	0	1	0	0
..................................................................................................................................................................................................................................GGGGAAGCAGCAGAA.........	15	1	20	0.05	1	0	0	0	0	0	1

ATAATGCTTTATTCTTACTTTATATTGTAGTTGCAACTCCTCTCATTTCGGACATCATGCGATCAGTCGGTAAGGCAAAGTACTAAAACACAAAGGGTTAAATGCTTACTGGGTTGTTAATTCATTAACTGACTAACGCAAACATAACTTCGACTAATTTGGCTTAAATTGATTCACAAGGGGGAAGTAAAAGAAATGTCAACCCGTGCCAGTTTGTAAACTACTTCCCCTTCGTCGTCGTCGTCATAAT ************************************************.......((((.((((((.(((((.((....((.............))....)))))))......(((((....))))).))))))))))(((((..((((.(((.......((((..........)))).....))).))))..)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
.................................................GGACATCATGAGTTCAGTC......................................................................................................................................................................................	19	2	1	1.00	1	1	0	0
.........................TGTAGTTGCCACTCC..................................................................................................................................................................................................................	15	1	5	0.60	3	1	0	2
................................................CGGACATCATCCGGTCATTC......................................................................................................................................................................................	20	3	3	0.33	1	1	0	0
.............................................................................................................................................................................TCACAAGGGGTAAGTA.............................................................	16	1	4	0.25	1	0	1	0
...........................................................................................................................................................AATTTGGATTAAAGTGATT............................................................................	19	2	9	0.11	1	1	0	0
..................TTTATATTGTAGTTG.........................................................................................................................................................................................................................	15	0	11	0.09	1	0	1	0
...............................................................................................................................................ATAACTTCGACAAATTT..........................................................................................	17	1	13	0.08	1	0	1	0
..............................................................................................................................................................................................................CGCAAGTTTCTAAACTACT.........................	19	3	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:1698967-1699216 -	dsi_7258	TATTACGAAATAAG-AATGAAAT---ATAACATC--------AACGTT----------------------------GAGGAGAGTAAAGCCTGTAGTACGCTAGTC-------------AGCCATTCCGTTTCATGAT--------------TTTGTGT---TTC-CCAATTTACGAATGACC--CA-ACAATTAAGTAATTGACTGA----T----TGCGTTT--GTAT---TGAAGCTGATTAAACCGAATTTAACTAAGTGTT-C---------------CCCCTT----------CATTTTC---TTTACAGTTGGGCACGGTCAAACA------------TTTGATGAAGGGGAAGC--------AGCAGCAGCAGTATTA
droSec2	scaffold_2:1815236-1815485 -		TATTACGAAATAAG-AATGAAAT---ATAAAATC--------AACGTT----------------------------GAGGAGAGTAAAGCTTGTAGTACGCTAGTC-------------AGCCATTCAGTTTCATGAT--------------TTTGTGT---TTC-CCAATTTACGAATGACC--CA-ACAATTAAGTAATTGACTGA----T----TGCGTTC--GTAT---TGAAGCTGATTAAACCGAATTAAACTAATTGTC-C---------------CCCCTT----------CATTTTC---TTTACAGTTGGGCACGGTCAAACA------------TTTGATGAAGGGGAAGC--------AGCAGCAGCAGTATTA
dm3	chr3L:1789052-1789300 -		TATTACGAAATAAG-AATGAAAT---ATAAAATC--------AACGTT----------------------------GAGGAGAGTAAAGCTTGTAGTACGATAGTC-------------AGCCATTCAGTTTCATGAT--------------TTTGTTT---TTT-CCACTTTACGAATGACC--CA-ACAATTAAGTAATTGACTGA----T----TGCGTTC--GCA----TGAAGCTGATTAAACAGAATTAAACTAATTGTT-C---------------CCCCTT----------CATTTTC---TTTACAGTTGGGCACGGTCAAACA------------TTTGATGAAGGGTTAGC--------AGCAGCAGCAGTATTA
droEre2	scaffold_4784:1773747-1773984 -		TATTATGAAATA---------------TAAAAAC--------AACGTT-----GAG----------------------GGATAGTAAAATTTG--GTACGTCAGCA-------------AGCCATTCAGTTTCATGAT--------------TTTGTGT---TTC-CCACTTTACGAATGACC--CA-ACAATTAAGTAATTGACTGA----T----TGCGTTT--GTAT---TGGAGCTGATTAAACCGAATTAAACTAATTGTT-C---------------CTCCTT----------CATTTTC---TTTACAGTTGGGCACGGTCAAACA------------TTTGATGAAGGGGAAGC--------AGCAGCAGCAGTATTA
droYak3	3L:1741370-1741592 -		TATTATGAAATA---------------TGAAAAC--------AATGT--------------------------------------------TGTAGTACGCAAGCC-------------AGCCATTCAGTTTCGTGAT--------------TTTGTGT---TTC-CCACATAACGAATGACC--CA-GCAATTAAGTAATTGAGTGA----T----TGCGTTT--GTAT---TGGAGCTGATTAAACCGAATTAAACTAATTGTT-C---------------TTTCTT----------CATTTTC---TTTACAGTTGGGCACGGTCAAACA------------TTTGATGAAGGGGAAGC--------ACCAGCAGCAGTATTA
droEug1	scf7180000407756:111764-112010 -		TATTATGAAATAAG-AATGATAT---C--A-GAA--------AACATT-----CAGAA-------------------------ATAAACATTGTAGTACGCGAGCCACTACTGTTTTTT----ATTT-TTATCATGGA--------------TGTGTGT---TTC-TCATCTTGTGAATGGCC--CA-ACGATTAAGTAATTTACTAG----T----TGTATTT--GTGC---TTGTGCTGACTAAA-CGAATTAAACTGATTGTG-T---------------CCCCTC---------------CT---TTTACAGTTGTGCACGGTCAAACA------------TTTGATGAAGAGGAAGC--------ACCACCAGCAGTATTA
droBia1	scf7180000302428:8485316-8485599 -		TACTATTAAATGTGTGATTATAC-CCC--A-GAA--------CTCGTT-----GAGAAATCTCCAAAC-TG-CTTTGAAGATAGTCAAGTTTTTAAAATGCCAGCCACGACTGTTTTAT----ATTTATTGCCATGAG--------------TGTGTGT---GTTTCCA-TCTGTGAATGACC--TA-ACGATTAAGTAATTGAATGAG--GC----TGTGGTT--GTGTTT-TTGCGCTGATTAAACCGAATTAAGCTAATTATT-C---------------CCCCTC----------CACTTCC---TTTGCAGTTGTGCACGGTCAAACA------------TTTAATGAAGAGGAAGC--------ACCAGTAGCAGTATTA
droTak1	scf7180000415229:361053-361340 +		TACTACAAAATGAG-TACGATATTTTC--A-GAATTTAATAAAAAATT-----CAGAAATATCAAAACAAG-CTTTAAAGATAATAAAGTTTGTGAAATGCCAGCCTCAACTGTTTTTTAGTTATTTATTCCCATGAT--------------TGTTTTT---TTT-CCATCTTATAAATGACC--CA-ACGATTAAGTAATTGACTCA----G----TCTGGTT--GCGT---TTGTGCTGATTAAACCGAATTAAACTAATTATT-C---------------CCCCTC----------CATTTCCT--TTTGCAGTTGAGCACGGTCGAACG------------TTTGATGAAGAGGAAG--------------TAGCAGTATTA
droEle1	scf7180000491249:3757792-3758069 +		TATTATGAAATAAA-ATTTCTATTCTT--A-GAA--------TACGTT-----GAGAAG------AAA-TACTATTAAAGATAGTAATGTTTGTAATTTGCCAGCTGCTACTGATTTTA----ATTTACTTCCATGAA--------------TGTGTGTTGTTTT-CCATCTTGTGAATGACC--CAAACGATTAAGTAATTGACTG------------TAATT--GTGT---TTGTGCTGATTAAACCGAATTAAATTAATTATT-C---------------CCCCTC--------GCAATTTCCT--TTTACAGTTGTGCACGGTCAAACA------------TTTGATGAAGAGGAAGC--------AACAGCAGCAGTATTA
droRho1	scf7180000776850:139179-139450 +		TAT---GAAATAAG-AATGCTGTTCTC--A-AAA--------AAAGTT-----CAGAGATATCAAAAA-TA-CTTTAATGATTT---------TAATTTTGCAACCACTACTGAATTTT----ATTAAGTTCCATGAA--------------TGTATGTTGTTTT-CAATCTTATGAATGACC--CA-ACGATTAAGTAATTGGCTGC----C----TGTGGTT--GTGT---TTGTGCTGATTAAACCGAATTAAACTAATTATTTC---------------CCCCAC----------CATTTCC---TTTACAGTTGTGCACGGTCAGACT------------TTTGATGAAGAGGAAGC--------ACCAGCAGCAGTATTA
droFic1	scf7180000454113:283907-284157 +		TGTTTCAAAACGC----------------AAAAC--------AAT----------------------------TGTAAAGATAGTAAAGTTTGTTTGGTGCCAGCCACCACTGTTTTCT----------------GGTTTCGCTTTGATGAATGTGTGT-GTTTC-CCATTTTATGAATGACC--CA-ATGATTAGGTAATTGCCTGG----C----TGCGATT--GTAT---TTGTGTTGATTAAACCGAATTTAACTAATTATT-C---------------CCCCTC----------CACTTCG---TTTACAGGAAAACACGGTCATCTG------------TTTGATGAAGGGAAAGC--------ATTAGCAGCAGTATTA
droKik1	scf7180000302577:277511-277762 -		GATTGTAAAA---------------------ATA--------AACGTTTAGCTGAGAAT------AAC-AA-TTTTCAGCATA--AAAGTTCGCAATTTGTCAGTGATTACTATTTTCT----ATTT-----------------------------------------GTTCCATGAATGACC--GG-TAATTCAAGCAATTGACGAGCGGCTGCTCTGTGCTT--TTGT---TTGTGCTGATTAAAGCGAATTCAACTAATTATTTT---------------CCCCTC----------TATTTCCTCCATTACAGTTGTGCACGGTCGAACA------------TTTGATGAGGAGAAGGAAGA-----ACCAGTTGCAGTATTA
droAna3	scaffold_13337:1048554-1048639 +		AAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTAACCGAGTGTA-T---------------CCTTTT----------GATTCCA---TCCACAGTTGTGCACGGACAAACA------------TTTGATGAAGAGGAATC--------CC------CAGTATTA
droBip1	scf7180000396371:1379345-1379446 +		TGCTAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTAATGAAATA-AAACTAATTAAATAAT-A---------------TCCTTT----------TATTTCCA--TTTACAGTTGTGCACGGACAAACA------------TTTGATGAAAAGGAATC--------CCCAGTA---------
dp5	XR_group8:531490-531559 -		ACTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTTACAGTTGTGCACGGTCAAACA------------TTTGATGAAGAAGCAGCAGCAGGTA-CCAGCAGCAGTATTA
droPer2	scaffold_32:950340-950410 +		CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAT---TTTACAGTTGTGCACGGTCAAACA------------TTTGATGAAGAAGCAGCAGCAGGTA-CCAGCAGCAGTATTA
droWil2	scf2_1100000004540:1234410-1234505 +		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAATTGAAACTAATT-AACTAATCGTT-C----TCTCTCTGTGCC---------------TCTTTTA---TTTACAGTTGTGCACGGGCAAAAT------------TTAAATGAAGTGAAA-----------------GCAGTATTA
droMoj3	scaffold_6680:2134443-2134586 +		A-TTATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCAACGGGG--AT----TCTCTCT--GTTTCT--AAGCCCAATTG---------AAATTAATTGTTGC---------------TTACTCTATTTTGTT-CTATTTC---ATTTTAGTTGTGCACGGGCGAACTTTGGCAGACATATTTGATGAG---CAACC--------AG--GCAGCAGTATTA
droGri2	scaffold_15110:422513-422688 -		TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAATAGCCAGCA-GAGGTTATGCAATCGACAAA----A----CCCGCGTCTATCTGCTTAAAGCTAATTG---------AAATTAACTGCT-CTCTCTCTCTCTGTTTC-------------TCCCTCTCAT--TCTGCAGTTGAGCACGGGCGAACTTTGGCAGCTA-ACTTGATGAGCAACCAGAAGA-----GGCAGCGGCAGTATTA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TATTACGAAATAAG-AATGAAAT---ATAACATC--------AACGTT----------------------------GAGGAGAGTAAAGCCTGTAGTACGCTAGTC-------------AGCCATTCCGTTTCATGAT--------------TTTGTGT---TTC-CCAATTTACGAATGACC--CA-ACAATTAAGTAATTGACTGA----T----TGCGTTT--GTAT---TGAAGCTGATTAAACCGAATTTAACTAAGTGTT-C---------------CCCCTT----------CATTTTC---TTTACAGTTGGGCACGGTCAAACA------------TTTGATGAAGGGGAAGC--------AGCAGCAGCAGTATTA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................GAGTAAAGCCTGTAGTACGCTAGTC-------------AG.........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CAAACA------------TTTGATGAAGGGGAAGC--------................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GGTCAAACA------------TTTGATGAAGGGGA...........................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................ATGAAGGGGAAGC--------AGCAGCAGCAG.....	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGATGAAGGGGAAGC--------AGCAGCAGC.......	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................AGTAAAGCCTGTAGTACGCTAGTC-------------AG.........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCCATTCCGTTTCG............................................................................................................................................................................................................................................................	15	19	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

TATTACGAAATAAG-AATGAAAT---ATAAAATC--------AACGTT----------------------------GAGGAGAGTAAAGCTTGTAGTACGCTAGTC-------------AGCCATTCAGTTTCATGAT--------------TTTGTGT---TTC-CCAATTTACGAATGACC--CA-ACAATTAAGTAATTGACTGA----T----TGCGTTC--GTAT---TGAAGCTGATTAAACCGAATTAAACTAATTGTC-C---------------CCCCTT----------CATTTTC---TTTACAGTTGGGCACGGTCAAACA------------TTTGATGAAGGGGAAGC--------AGCAGCAGCAGTATTA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................................................................................................................................................................................................................................................GAAGGGGAAGC--------AGCAGCAGCAGT....	23	1	4.00	4	0	3	1	0
...........................................................................................................................................................................................................................................................................................................................................CA------------TTTGATGAAGGGGAAGC--------AGCA............	23	1	2.00	2	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................................GATGAAGGGGAAGC--------AGCAGCAGCAGT....	26	1	2.00	2	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGGAAGC--------................	21	1	2.00	2	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................ACA------------TTTGATGAAGGGGAAGC--------................	20	1	2.00	2	0	0	2	0
...............................................................................................................................................................................................................................................................................................................................................................GAAGGGGAAGC--------AGCAGCAGCA......	21	1	2.00	2	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................A------------TTTGATGAAGGGGAAGC--------................	18	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................GAAGC--------AGCAGCAGCAGTATT.	20	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGGAAGC--------AGC.............	24	1	1.00	1	0	0	1	0
.....................................................................................................................................ATGAT--------------TTTGTGT---TTC-CCA.........................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................TGAAGGGGAAGC--------AGCAGCAGC.......	21	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................GATGAAGGGGAAGC--------AGCAGCA.........	21	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................AAGGGGAAGC--------AGCAGCAGCA......	20	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................GAAGGGGAAGC--------AGCAGCAGCAG.....	22	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................CAAACA------------TTTGATGAAGGGGA...........................	20	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................GATGAAGGGGAAGC--------AGCAGCAGCA......	24	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................TGATGAAGGGGAAGC--------AGCAGC..........	21	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................CA------------TTTGATGAAGGGGAAGC--------AGC.............	22	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................AAACA------------TTTGATGAAGGGGA...........................	19	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................TTGATGAAGGGGAAGC--------AGCAGCAGC.......	25	1	1.00	1	0	0	1	0

dm3

TATTACGAAATAAG-AATGAAAT---ATAAAATC--------AACGTT----------------------------GAGGAGAGTAAAGCTTGTAGTACGATAGTC-------------AGCCATTCAGTTTCATGAT--------------TTTGTTT---TTT-CCACTTTACGAATGACC--CA-ACAATTAAGTAATTGACTGA----T----TGCGTTC--GCA----TGAAGCTGATTAAACAGAATTAAACTAATTGTT-C---------------CCCCTT----------CATTTTC---TTTACAGTTGGGCACGGTCAAACA------------TTTGATGAAGGGTTAGC--------AGCAGCAGCAGTATTA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................CA------------TTTGATGAAGGGTTAGC--------AGC.............	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGTTAGC--------................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CA------------TTTGATGAAGGGTTAGC--------AGCA............	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................A------------TTTGATGAAGGGTTAGC--------A...............	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GTTAGC--------AGCAGCAGCAGT....	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GGTCAAACA------------TTTGATGAAGGGTTAGC--------A...............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGTT...........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................GGGCACGGTCAAACA------------TTTGATGAAG...............................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TTGGGCACGGTCAAACA------------TTTGATGAA................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................ATGAAGGGTTAGC--------AGCAGCAGCA......	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................ATTTTC---TTTACAGTTGGGCA...............................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CAAACA------------TTTGATGAAGGGGA...........................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AAACA------------TTTGATGAAGGGGA...........................	19	8	0.25	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TTGATGAAGGGTTAGC--------TA..............	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TTGATGAAGGGTTAGG--------GT..............	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TATTATGAAATA---------------TAAAAAC--------AACGTT-----GAG----------------------GGATAGTAAAATTTG--GTACGTCAGCA-------------AGCCATTCAGTTTCATGAT--------------TTTGTGT---TTC-CCACTTTACGAATGACC--CA-ACAATTAAGTAATTGACTGA----T----TGCGTTT--GTAT---TGGAGCTGATTAAACCGAATTAAACTAATTGTT-C---------------CTCCTT----------CATTTTC---TTTACAGTTGGGCACGGTCAAACA------------TTTGATGAAGGGGAAGC--------AGCAGCAGCAGTATTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................GAAGGGGAAGC--------AGCAGCAGCAGT....	23	1	5.00	5	0	0	0	1	4	0	0
..........................................................................................................................................................................................................................................................................................................................................ACA------------TTTGATGAAGGGGAAGC--------................	20	1	4.00	4	0	1	0	0	1	2	0
............................................................................................................................................................................................................................................................................................................................................................GATGAAGGGGAAGC--------AGCAGCAGC.......	23	1	4.00	4	0	0	0	1	3	0	0
............................................................................................................................................................................................................................................................................................................................................................GATGAAGGGGAAGC--------AGCAGC..........	20	1	3.00	3	0	0	0	0	3	0	0
............................................................................................................................................................................................................................................................................................................................................................GATGAAGGGGAAGC--------AGCAGCAGCAGT....	26	1	3.00	3	0	0	0	0	2	1	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGGAAGC--------................	21	1	3.00	3	0	0	0	0	3	0	0
.............................................................................................................................................................................................................................................................................................................................................................ATGAAGGGGAAGC--------AGCAGCAGCA......	23	1	3.00	3	0	0	0	0	1	2	0
...............................................................................................................................................................................................................................................................................................................................................................GAAGGGGAAGC--------AGCAGCAGCA......	21	1	2.00	2	0	0	0	1	1	0	0
...............................AAC--------AACGTT-----GAG----------------------GGATAGTAAAATTT......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................A------------TTTGATGAAGGGGAAGC--------AGCAGCAGCA......	28	1	1.00	1	1	0	0	0	0	0	0
...........A---------------TAAAAAC--------AACGTT-----GAG----------------------GGATAGTA............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AAACA------------TTTGATGAAGGGGAAGC--------A...............	23	1	1.00	1	1	0	0	0	0	0	0
...........A---------------TAAAAAC--------AACGTT-----GAG----------------------GGATAGT.............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................ATGAAGGGGAAGC--------AGCAGC..........	19	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGGAAGC--------AG..............	23	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GAAGGGGAAGC--------AGCAGCAGCAGTATT.	26	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGGAAGC--------AGC.............	24	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................GATGAAGGGGAAGC--------AGCAGCA.........	21	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................AGGGGAAGC--------AGCAGCAGC.......	18	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGGA...........................	18	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TTGGGCACGGTCAAACA------------TTTGAT...................................	23	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GAAGGGGAAGC--------AGCAGCAGCAGTATTA	27	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGGAAGC--------AGCAGC..........	27	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................ACA------------TTTGATGAAGGGGAAGC--------AGC.............	23	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................TGAAGGGGAAGC--------AGCAGCAGC.......	21	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGGAAGC--------A...............	22	1	1.00	1	0	0	1	0	0	0	0

droYak3

TATTATGAAATA---------------TGAAAAC--------AATGT--------------------------------------------TGTAGTACGCAAGCC-------------AGCCATTCAGTTTCGTGAT--------------TTTGTGT---TTC-CCACATAACGAATGACC--CA-GCAATTAAGTAATTGAGTGA----T----TGCGTTT--GTAT---TGGAGCTGATTAAACCGAATTAAACTAATTGTT-C---------------TTTCTT----------CATTTTC---TTTACAGTTGGGCACGGTCAAACA------------TTTGATGAAGGGGAAGC--------ACCAGCAGCAGTATTA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................GAAGGGGAAGC--------ACCAGCAGC.......	20	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GAAGGGGAAGC--------ACCAGCAGCAGT....	23	1	4.00	4	0	2	0	0	0	1	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................ATGAAGGGGAAGC--------ACCAGC..........	19	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GATGAAGGGGAAGC--------ACCAGC..........	20	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGGAAG.........................	20	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAGGGGAAGC--------ACCAGCAGCAGT....	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GATGAAGGGGAAGC--------ACCAGCAGCAGT....	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................ATGAAGGGGAAGC--------ACCAGCAGC.......	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................GTCAAACA------------TTTGATGAAGGG.............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................A------------TTTGATGAAGGGGAAGC--------ACCA............	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CAAACA------------TTTGATGAAGGGGAA..........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GATGAAGGGGAAGC--------ACCAGCAGCA......	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CA------------TTTGATGAAGGGGAAGC--------ACCAGCAGC.......	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGGAA..........................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GAAGGGGAAGC--------ACCAGCAGCAG.....	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................A------------TTTGATGAAGGGGAAGC--------A...............	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TGGGCACGGTCAAACA------------TTT......................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................ATGAAGGGGAAGC--------ACCAGCAGCA......	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...TATGAAATA---------------TGAAAAC--------AATGT--------------------------------------------T......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AAACA------------TTTGATGAAGGGGAAGC--------ACCAGC..........	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGGAAGC--------ACCA............	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................ACA------------TTTGATGAAGGGGAAGC--------ACCAGC..........	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GATGAAGGGGAAGC--------ACCAGCAGCAG.....	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CAAACA------------TTTGATGAAGGGGA...........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................ATGAAGGGGAAGC--------ACCAGCA.........	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CA------------TTTGATGAAGGGGAAGC--------................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGGAAGC--------ACCAGCA.........	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................ACA------------TTTGATGAAGGGGAAGC--------A...............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................ACA------------TTTGATGAAGGGGAAGC--------ACC.............	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................ACA------------TTTGATGAAGGGGAAG.........................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TTTGATGAAGGGGAAGC--------ACC.............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CA------------TTTGATGAAGGGGAAGC--------ACCAGCA.........	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................CGTTT--GTAT---TGGAGCTGATTAAAC..........................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CAAACA------------TTTGATGAAGGGGAAGC--------................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GCACGGTCAAACA------------TTTGAT...................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGGGGAAGC--------A...............	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................GGGCACGGTCAAACA------------TTTGATGAAGGGG............................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CA------------TTTGATGAAGGGGAAG.........................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGATGAAGGGGAAGC--------ACCAGC..........	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TATTATGAAATAAG-AATGATAT---C--A-GAA--------AACATT-----CAGAA-------------------------ATAAACATTGTAGTACGCGAGCCACTACTGTTTTTT----ATTT-TTATCATGGA--------------TGTGTGT---TTC-TCATCTTGTGAATGGCC--CA-ACGATTAAGTAATTTACTAG----T----TGTATTT--GTGC---TTGTGCTGACTAAA-CGAATTAAACTGATTGTG-T---------------CCCCTC---------------CT---TTTACAGTTGTGCACGGTCAAACA------------TTTGATGAAGAGGAAGC--------ACCACCAGCAGTATTA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TACTATTAAATGTGTGATTATAC-CCC--A-GAA--------CTCGTT-----GAGAAATCTCCAAAC-TG-CTTTGAAGATAGTCAAGTTTTTAAAATGCCAGCCACGACTGTTTTAT----ATTTATTGCCATGAG--------------TGTGTGT---GTTTCCA-TCTGTGAATGACC--TA-ACGATTAAGTAATTGAATGAG--GC----TGTGGTT--GTGTTT-TTGCGCTGATTAAACCGAATTAAGCTAATTATT-C---------------CCCCTC----------CACTTCC---TTTGCAGTTGTGCACGGTCAAACA------------TTTAATGAAGAGGAAGC--------ACCAGTAGCAGTATTA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TACTACAAAATGAG-TACGATATTTTC--A-GAATTTAATAAAAAATT-----CAGAAATATCAAAACAAG-CTTTAAAGATAATAAAGTTTGTGAAATGCCAGCCTCAACTGTTTTTTAGTTATTTATTCCCATGAT--------------TGTTTTT---TTT-CCATCTTATAAATGACC--CA-ACGATTAAGTAATTGACTCA----G----TCTGGTT--GCGT---TTGTGCTGATTAAACCGAATTAAACTAATTATT-C---------------CCCCTC----------CATTTCCT--TTTGCAGTTGAGCACGGTCGAACG------------TTTGATGAAGAGGAAG--------------TAGCAGTATTA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TATTATGAAATAAA-ATTTCTATTCTT--A-GAA--------TACGTT-----GAGAAG------AAA-TACTATTAAAGATAGTAATGTTTGTAATTTGCCAGCTGCTACTGATTTTA----ATTTACTTCCATGAA--------------TGTGTGTTGTTTT-CCATCTTGTGAATGACC--CAAACGATTAAGTAATTGACTG------------TAATT--GTGT---TTGTGCTGATTAAACCGAATTAAATTAATTATT-C---------------CCCCTC--------GCAATTTCCT--TTTACAGTTGTGCACGGTCAAACA------------TTTGATGAAGAGGAAGC--------AACAGCAGCAGTATTA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TAT---GAAATAAG-AATGCTGTTCTC--A-AAA--------AAAGTT-----CAGAGATATCAAAAA-TA-CTTTAATGATTT---------TAATTTTGCAACCACTACTGAATTTT----ATTAAGTTCCATGAA--------------TGTATGTTGTTTT-CAATCTTATGAATGACC--CA-ACGATTAAGTAATTGGCTGC----C----TGTGGTT--GTGT---TTGTGCTGATTAAACCGAATTAAACTAATTATTTC---------------CCCCAC----------CATTTCC---TTTACAGTTGTGCACGGTCAGACT------------TTTGATGAAGAGGAAGC--------ACCAGCAGCAGTATTA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGTTTCAAAACGC----------------AAAAC--------AAT----------------------------TGTAAAGATAGTAAAGTTTGTTTGGTGCCAGCCACCACTGTTTTCT----------------GGTTTCGCTTTGATGAATGTGTGT-GTTTC-CCATTTTATGAATGACC--CA-ATGATTAGGTAATTGCCTGG----C----TGCGATT--GTAT---TTGTGTTGATTAAACCGAATTTAACTAATTATT-C---------------CCCCTC----------CACTTCG---TTTACAGGAAAACACGGTCATCTG------------TTTGATGAAGGGAAAGC--------ATTAGCAGCAGTATTA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GATTGTAAAA---------------------ATA--------AACGTTTAGCTGAGAAT------AAC-AA-TTTTCAGCATA--AAAGTTCGCAATTTGTCAGTGATTACTATTTTCT----ATTT-----------------------------------------GTTCCATGAATGACC--GG-TAATTCAAGCAATTGACGAGCGGCTGCTCTGTGCTT--TTGT---TTGTGCTGATTAAAGCGAATTCAACTAATTATTTT---------------CCCCTC----------TATTTCCTCCATTACAGTTGTGCACGGTCGAACA------------TTTGATGAGGAGAAGGAAGA-----ACCAGTTGCAGTATTA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTAACCGAGTGTA-T---------------CCTTTT----------GATTCCA---TCCACAGTTGTGCACGGACAAACA------------TTTGATGAAGAGGAATC--------CC------CAGTATTA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................................................CA------------TTTGATGAAGAGGAATC--------CC------........	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CA------------TTTGATGAAGAGGAATC--------CC------CA......	23	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................GACAAACA------------TTTGATGAAGAG.............................	20	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................GAAGAGGAATC--------CC------CAGTATT.	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AAACA------------TTTGATGAAGAGGAATC--------CC------CAGT....	28	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AACA------------TTTGATGAAGAGGA...........................	18	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GATGAAGAGGAATC--------CC------CAGT....	20	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................TGTGCACGGACAAACA------------TTTG.....................................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GGACAAACA------------TTTGATGAAGAGGA...........................	23	1	1.00	1	0	0	0	0	0	1

droBip1

TGCTAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTAATGAAATA-AAACTAATTAAATAAT-A---------------TCCTTT----------TATTTCCA--TTTACAGTTGTGCACGGACAAACA------------TTTGATGAAAAGGAATC--------CCCAGTA---------	Size	Hit Count	Total Norm	Total
No Reads

dp5

ACTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTTACAGTTGTGCACGGTCAAACA------------TTTGATGAAGAAGCAGCAGCAGGTA-CCAGCAGCAGTATTA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................CA------------TTTGATGAAGAAGCAGCAGCAGGT.................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGGTA-CCAGCAGCAGT....	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGGTA-CCAGCAGCAGTATT.	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................ATGAAGAAGCAGCAGCAGGT.................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GCAGCAGGTA-CCAGCAGCA......	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GATGAAGAAGCAGCAGCAGGTA-CCAGC..........	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GAAGAAGCAGCAGCAGGTA-CCAGCA.........	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GATGAAGAAGCAGCAGCAGGTA-CCAGCA.........	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................AGCAGGTA-CCAGCAGCAGT....	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGGTA-CCAGCAGCA......	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.CTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTTACAGTTGTGCACGGTCAAAC......................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................AAGCAGCAGCAGGTA-CCAGCAGCAGTA...	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GAAGAAGCAGCAGCAGGT.................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAT---TTTACAGTTGTGCACGGTCAAACA------------TTTGATGAAGAAGCAGCAGCAGGTA-CCAGCAGCAGTATTA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................................................................................................................................................................................AAGCAGCAGCAGGTA-CCAGC..........	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AGAAGCAGCAGCAGGTA-CCAGCAGC.......	25	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TGAAGAAGCAGCAGCAGGT.................	19	2	0.50	1	0	1	0	0	0	0

droWil2

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAATTGAAACTAATT-AACTAATCGTT-C----TCTCTCTGTGCC---------------TCTTTTA---TTTACAGTTGTGCACGGGCAAAAT------------TTAAATGAAGTGAAA-----------------GCAGTATTA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................................................................................................................TAAATGAAGTGAAA-----------------GCAGTA...	20	1	2.00	2	0	0	0	2	0
...........................................................................................................................................................................................................................................................................................................................................AT------------TTAAATGAAGTGAAA-----------------GC.......	19	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................CGGGCAAAAT------------TTAAATGAAGTGAAA-----------------GC.......	27	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................TAAATGAAGTGAAA-----------------GCAGT....	19	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................GGGCAAAAT------------TTAAATGAAGTGAAA-----------------GC.......	26	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TTAAATGAAGTGAAA-----------------GCAGTA...	21	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................TTTTA---TTTACAGTTGTGCA...............................................................	19	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................AT------------TTAAATGAAGTGAAA-----------------GCAGTA...	23	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................TTAAATGAAGTGAAA-----------------GCAGT....	20	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................TTACAGTTGTGCACGGGCAAA.......................................................	21	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................AAATGAAGTGAAA-----------------GCAGT....	18	1	1.00	1	0	0	0	1	0

droMoj3

A-TTATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCAACGGGG--AT----TCTCTCT--GTTTCT--AAGCCCAATTG---------AAATTAATTGTTGC---------------TTACTCTATTTTGTT-CTATTTC---ATTTTAGTTGTGCACGGGCGAACTTTGGCAGACATATTTGATGAG---CAACC--------AG--GCAGCAGTATTA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................................................................................................................................................................................................TGCACGGGCGAACTTTGGC................................................	19	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................TTTGATGAG---CAACC--------AG--GCAGCAGT....	24	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGATGAG---CAACC--------AG--GCAGCAGTAT..	24	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GGCAGACATATTTGATGAG---.............................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TTTGATGAG---CAACC--------AG--GC..........	18	1	1.00	1	0	0	0	0	1	0

droGri2

TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAATAGCCAGCA-GAGGTTATGCAATCGACAAA----A----CCCGCGTCTATCTGCTTAAAGCTAATTG---------AAATTAACTGCT-CTCTCTCTCTCTGTTTC-------------TCCCTCTCAT--TCTGCAGTTGAGCACGGGCGAACTTTGGCAGCTA-ACTTGATGAGCAACCAGAAGA-----GGCAGCGGCAGTATTA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................................................................................................................................................................................................................................................CTTGATGAGCAACCAGAAGA-----GGCA............	24	1	1.00	1	0	1

dsi_7258

3l:1699017-1699166 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads