ID:

dsi_7249

 Coordinate:

3l:7598273-7598422 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-23.4 -23.1 -22.8

Flybase annnotation

Antisense to three_prime_UTR [3l_7598213_7598707_-]; Antisense to exon [3l_7598213_7599597_-]

No Repeatable elements found

Sense Strand Reads

ACTCGTAGGCATTGGCATCCACTTTCTCCATCCCGCCGCGTCTCAAATGGGTGTAGAATGTGATCTGGTTACTGGAACTTATATCCGTCTGTCTGGGCTCGATTACCGGTGTGGGATTCATAAAGATGTTCAGCAGCGCCTCATGGTCCATCTCGTAGGCCAGGTCATATATGGTCATGTTGTACAAATCTTGCTGAAAAGCGAAATAGGTGTGTAAGAACTGAGTTTCAAATAAATCAAATATTTACTT
*********************************************************************************...((((.(((((((.(((((..((((((((..((..(((....))).))....)))))....))).....))).)).))))).))...)))).................*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M023
head
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
.........................................................................................................................................................................TATGGTCGTGTTGTACAAATCCA.......................................................... 23 3 1 3.00 3 0 3 0 0 0 0 0 0 0 0
..................................................................................................TCGATTACCGGTATGGGAACCA.................................................................................................................................. 22 3 5 2.80 14 2 0 12 0 0 0 0 0 0 0
..........................................................TGTGATGTGATTAGTGGAAC............................................................................................................................................................................ 20 3 6 2.00 12 0 0 0 0 0 5 7 0 0 0
..................................................................................................TCGATTCCCGGTGTGGGAACCA.................................................................................................................................. 22 3 5 1.60 8 7 0 1 0 0 0 0 0 0 0
.................................................................................TATCCGTCTGTCTGGGCTCGA.................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................TCGATTCCCGGTATGGGATCCA.................................................................................................................................. 22 3 5 1.00 5 4 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................ATGGTCATGTTGTACAAATCT........................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................................................GCTCGATTACCGGTATGGGGATCA.................................................................................................................................. 24 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................GCTCAATTACCTGTGTGGGAATCA.................................................................................................................................. 24 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................ATAAGTGTGTAAGAA.............................. 15 1 20 0.70 14 0 0 0 0 0 14 0 0 0 0
............................................................................................................................................................................................................AAGAGGTGTGTAACAACT............................ 18 2 5 0.40 2 0 0 0 1 0 0 0 1 0 0
............................................................................................................................................................................................TCTTGCTGAAACGCGAAAGC.......................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCATAGATGGTTATCTTGTA.................................................................. 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................GGGCTCGATTCCCGGCATGGGAT..................................................................................................................................... 23 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0
..........................................................TGTGATCTGGTTGCTG................................................................................................................................................................................ 16 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0
..........................................................TGTGATGTGGCTAGTGGAAC............................................................................................................................................................................ 20 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................CGATTCCCGGTATGGGATT.................................................................................................................................... 19 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................GATTAACGGTGTGGGATAT................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1
..................................................................................................TCGATTCCCGGTGTCGGA...................................................................................................................................... 18 2 15 0.07 1 0 0 0 0 0 0 0 0 1 0
..........................................................TGTGATCTGGTTGCTGAAC............................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................................ACTGTGATCTGGTTGCTGA............................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

##########################################################################################################################################################################################################################################################
TGAGCATCCGTAACCGTAGGTGAAAGAGGTAGGGCGGCGCAGAGTTTACCCACATCTTACACTAGACCAATGACCTTGAATATAGGCAGACAGACCCGAGCTAATGGCCACACCCTAAGTATTTCTACAAGTCGTCGCGGAGTACCAGGTAGAGCATCCGGTCCAGTATATACCAGTACAACATGTTTAGAACGACTTTTCGCTTTATCCACACATTCTTGACTCAAAGTTTATTTAGTTTATAAATGAA
***********************************************************...((((.(((((((.(((((..((((((((..((..(((....))).))....)))))....))).....))).)).))))).))...)))).................********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
......................................................................................................................................TCGCGGAGTACCAGGTAGAGCATC............................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................TAGGCAGACAGACCCGAGCTAATG................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................TCCGGTCCAGTATATACCAGT......................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................AAGTCGTCGCGGAGTACCAGGTAG.................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................CCTAAGTATTTCTACAAG....................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0
....................................................................................GGCAGACAGACCCGAGCTAA.................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................................................................................CCCGGTCCAGTATATACCAGT......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................CTACAAGTCGTCGCGGAGTACCAGGT.................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................GCGGAGTACAAGGTACAGAAT............................................................................................. 21 3 2 0.50 1 0 1 0 0 0 0 0 0
.......................................................................................AGACAGACCCGCGCTAA.................................................................................................................................................. 17 1 2 0.50 1 0 0 0 0 0 1 0 0
........................................................................................................................ATTTCTATAAGTCGTCG................................................................................................................. 17 1 3 0.33 1 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................TTTGCGCTTTATCCA....................................... 15 1 11 0.18 2 0 0 0 0 0 0 2 0
......................................................................................................................................................................................ATGTTTAGACCGACTGTT.................................................. 18 2 11 0.09 1 0 0 0 0 0 0 0 1
............................................................................................................................................................................CCAGTATAGCATGTTCAGA........................................................... 19 3 16 0.06 1 0 0 1 0 0 0 0 0
.................................................................GCAAATGACCTTGAATTTA...................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0

Generated: 04/24/2015 at 10:23 AM