dsi_7223

CDS [3r_22021733_22021742_-]; five_prime_UTR [3r_22021743_22021790_-]; exon [3r_22021733_22021790_-]; CDS [3r_22021162_22021604_-]; exon [3r_22020777_22021604_-]; intron [3r_22021605_22021732_-]

##################################################--------------------------------------------------------------------------------------------------------------------------------################################################## TAAATTTTTGTATCGAGAAGAAGCTGATAAAGGATTCACCATGCTGAAAGGTAAACATCCTTAGGAATAATCTACTCAACTATTGTGCGTTCGGTGAAATTCAACCTGGAACTATGAACCTGATAATCTTAATCACGCATACTATTAATCACTCGACTATTTTCAAATCCCCCTGCAGCAGTCATCATTTTCTTTGGCATCCTGGCTCTGGGCTACGCCGCCTCCGTG ************************************************.........((...(((((.((............(((((((((((....(((......)))......))).))...........))))))..............)).)))))..............))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	GSM343915 embryo	M053 female body	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	SRR618934 dsim w501 ovaries
.....TTTTGTATCGAGAAGAAGCTG..........................................................................................................................................................................................................	21	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ATCCTGGCTCTGGGCTACGCCGC.......	23	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0
...........ATCGAGAAGAAGCTGATAAAGGATT................................................................................................................................................................................................	25	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGGC...............	22	0	1	2.00	2	1	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATTTTCTTTGGCATCCTGGCTCTGGGC...............	27	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
................GAAGAAGCTGATAAAGGATTC...............................................................................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TTTTCTTTGGCATCCTGGCTCTGGGCT..............	27	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
...........ATCGAGAAGAAGCTGATAAAGGATTC...............................................................................................................................................................................................	26	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
........TGTATCGAGAAGAAGCTG..........................................................................................................................................................................................................	18	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGGCTA.............	24	0	1	2.00	2	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ATCCTGGCTCTGGGCTAC............	18	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
.....TTTTGTATCGAGAAGAAGCT...........................................................................................................................................................................................................	20	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CATCCTGGCTCTGGGCTACGCCGC.......	24	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGGCTAC............	25	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
...ATTTTTGTATCGAGAAGAAGCTGA.........................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TCTTTGGCATCCTGGCTCTG..................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...........ATCGAGAAGAAGCTGATAAAGGAT.................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CTGGCTCTGGGCTACGCCGCCT.....	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................GAACCCGATAATCTT..................................................................................................	15	1	3	1.00	3	0	0	0	0	3	0	0	0	0	0
......TTTGTATCGAGAAGAAGCTGAC........................................................................................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.AAATTTTTGTATCGAGAAGAAGCTG..........................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.AAATTTTTGTATCGAGAAGAAGCT...........................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......TTGTATCGAGAAGAAGCTGAG........................................................................................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
....TTTTTGTATCGAGAAGAAGCTG..........................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.............CGAGAAGAAGCTGATAAAGGATT................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...............AGAAGAAGCTGATAAAGG...................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...ATTTTTGTATCGAGAAGAAGCTG..........................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...........................TAAAGGATTCACCATGCTGAAA...................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................AAGGATTCACCATGCTGAAAGC.................................................................................................................................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................ATCCTGGCTCTGGGCTACGCC.........	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................ATAAAGGATTCACCATGCTGA.....................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................CTTTGGCATCCTGGCTCTG..................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................CAACCTGGAACTATGAACCTGAT........................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCCTGGCTCTGGGCTACGC..........	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TCTTTGGCATCCTGGCTCTGGGCTAC............	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......TTTGTATCGAGAAGAAGCTG..........................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ATCCTGGCTCTGGGCTACGC..........	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ATCCTGGCTCTGGGCTACGCCGCCTCC...	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.........GTATCGAGAAGAAGCTGATAAAGGAT.................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......TTTGTATCGAGAAGAAGCC...........................................................................................................................................................................................................	19	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ATCCTGGCTCTGGGCTACGCCGG.......	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ATCCTGGCTCTGGGCTACGCCTCCTC....	26	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GTCATCATTTTCTTTGGC..............................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTTGGCATCCTGGCTCTG..................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CATCCTGGCTCTGGGCTACGCCGCCTC....	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AGTCATCATTTTCTTTGGC..............................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTGGCATCCTGGCTCTGGGCTACGCCG........	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CCCCCTGCATCGGTCATCA.........................................	19	2	2	0.50	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................CATCCTGGGTCTGCGCTACGC..........	21	2	2	0.50	1	0	0	0	0	0	0	1	0	0	0
......................GCTGATAAAGGATTCACCATGCGG......................................................................................................................................................................................	24	1	2	0.50	1	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TCTTTGGCATCCTCGCTCGAG.................	21	3	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CTGGCTCTCGGCTACG...........	16	1	5	0.20	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................TCTTTGGCATTCTAGCTCTTG.................	21	3	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................TATTATCAAATACCCATGCA...................................................	20	3	12	0.17	2	0	0	0	0	0	0	0	1	1	0
....................................................................................................................................................................................ATCATCATTTTCTTTGACGTC...........................	21	3	7	0.14	1	0	0	0	0	0	1	0	0	0	0
......................................TCATGCTGAAAGGTA...............................................................................................................................................................................	15	1	10	0.10	1	0	0	0	0	0	1	0	0	0	0
...................................................................................................................GAATCTGATAATCTT..................................................................................................	15	1	13	0.08	1	0	0	0	0	0	1	0	0	0	0
..................................TTCACCATGCGGAAA...................................................................................................................................................................................	15	1	15	0.07	1	0	0	0	0	0	0	0	0	0	1

ATTTAAAAACATAGCTCTTCTTCGACTATTTCCTAAGTGGTACGACTTTCCATTTGTAGGAATCCTTATTAGATGAGTTGATAACACGCAAGCCACTTTAAGTTGGACCTTGATACTTGGACTATTAGAATTAGTGCGTATGATAATTAGTGAGCTGATAAAAGTTTAGGGGGACGTCGTCAGTAGTAAAAGAAACCGTAGGACCGAGACCCGATGCGGCGGAGGCAC ************************************************.........((...(((((.((............(((((((((((....(((......)))......))).))...........))))))..............)).)))))..............))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
.............................................................................................................TGGATAGTTGGACTAGTAGA...................................................................................................	20	3	1	1.00	1	1	0	0	0
..........................................................................................................................................TATGAGAATTAGTGAACTG.......................................................................	19	2	2	0.50	1	0	1	0	0
..................................................................................................................................TTAGTGCCTATGATAA..................................................................................	16	1	4	0.25	1	1	0	0	0
..................................................................................................................................TTAGTGCGGATGATAA..................................................................................	16	1	4	0.25	1	1	0	0	0
.................................................................................................................TAGTTGGACTAGTAGAAT.................................................................................................	18	2	4	0.25	1	0	0	1	0
.............................................................................................................TTGATAGTTGGACTA........................................................................................................	15	1	6	0.17	1	1	0	0	0
................................................................................................................ATAGTTGGACTAGTAGAA..................................................................................................	18	2	7	0.14	1	1	0	0	0
....................................................................................................................TTGGACTATTAGAAA.................................................................................................	15	1	8	0.13	1	1	0	0	0
.................................................................................................................TAGTTGGACTATTAG....................................................................................................	15	1	9	0.11	1	1	0	0	0
....................................................................................................................................AGTGCGTATGATCCTTA...............................................................................	17	2	9	0.11	1	1	0	0	0
...............................................................................................................................................................................................................GACTCGATGCGGCGG......	15	1	20	0.10	2	0	2	0	0
.............................................................................................................TGGATAGTTGGACTAGTAG....................................................................................................	19	3	16	0.06	1	0	0	1	0
.................................................................................................................................................................................GGTCAGTAGTAAAAG....................................	15	1	19	0.05	1	0	0	1	0
......................................................................................................................................................AGAGCTGTTAATAGTTTAG...........................................................	19	3	20	0.05	1	1	0	0	0
...............................................................................................................................................................AAAAGTTTAGAGGGCCG....................................................	17	2	20	0.05	1	0	0	0	1
.................................................................................................................TAGTTGGACTAGTAGAA..................................................................................................	17	2	20	0.05	1	0	0	1	0
..................................................................................................................................................................................................ACCGTAGGACCGACACT.................	17	2	20	0.05	1	0	0	0	1
....................................................................................................................................AGTGCGAATGATCCTTAG..............................................................................	18	3	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:22021555-22021782 -	dsi_7223	TAA--ATTTTTGTATCGAGAAGAAGCTG----------------ATAAAGGATTCACCATGCTGAAAGGTAAACA--TCCTTAGGAATAATCTACTCAACT-----------ATTGTGCGTTCGG--------------------TG----------AAATTCAA---------------------------------------------CCTGGAACTATGA-----------------------------------------------ACCTGAT-------------------AATCTTAATCACGCATACTATTAATCACTCGACTATTTTCAAAT-CCCCCTGCAGCAGTCATCATTTTCTTTGGCATCCTGGCTCTGGGCTACGCCGCCT---CCGTG------------------------
droSec2	scaffold_13:1335764-1335991 -		TAA--ATTTTTGAATCGAGAAGAAGCTG----------------ATAAAGGATTCACCATGCTGAAAGGTAAACA--TCCTTAGGAATAATCTACTCAACT-----------ATTGTGCGTTCGG--------------------TG----------AAATTCAA---------------------------------------------CCTGGAACTATGA-----------------------------------------------GCTTTAT-------------------AATCTTAATCACGCATACTATTAATCACTCGACTATTTTCGAAT-CCCCCTGCAGCAGTCATCATTTTCTTTGGCATCCTGGCTCTGGGCTACGCCGCCT---CCGTG------------------------
dm3	chr3R:22561769-22562010 -		TAA--ATTTTTGAATCGAGAAGAAGCTG----------------ATAAAGGAATCACCATGCTGAAAGGTAAACA--TCCTTAGGAATAATCTACTCAACT-----------ATAGTGCGTTCGA---------------TAAAGTG----------AATTTCTA-----------------------------GAATATTATCACATTTCCTGGAACTATGA-----------------------------------------------GTTTGAT-------------------AATCTTAATCACGCATACTATTTATCACTTGCCTAT--------TCTCCCTGCAGCACTCATCATTTTCTTTGGCATCCTGGCTCTGGGCTATGCCGCCT---CCGTG------------------------
droEre2	scaffold_4820:5489389-5489664 +		TAG--ATTTTTGAATCGCAAAGAAGCTG----------------CTAAAGGATTCACCATGCTGAAAGGTAAACA--TCCTTAGGAATAATCCACTCCACT-----------ACTGTGCGTTCGGTTGTGAC-AAAGGGACAAAGTG----------AAATTCACAGAATA-------ATATATTTATAGC-TAAAATACTATCATACTTCCTAGAACTATGA-----------------------------------------------ACTTAAT-------------------AATCTCAATCAC---------TATTCACTCGGATATTCGCTGATCCTCCCTGCAGCACTCATCATTTTCTTCGGCCTCCTGGCTCTGTGCTACGCCGCCT---CCGTG------------------------
droYak3	3R:23934055-23934295 +		TAC--ATTTTTGAATCGAAAAGAAGCTG----------------ATAAAGGATTCACCATGCTGAAAGGTAAGCACATCCTTCGAAATAATCTACTCAACT-----------GTTGTGACTGGCG---------------TAAAGTG----------AAACTCATCGAATATTTACAAATACATTTTAAGCA--------------------------TATT------------------------------------------------ACATGAT-------------------AATCTTTATCACTATTACTATTAATCACTTGGATAT-------------TCGCAGGACTCATCATATTCTTTGGCCTGCTGGCTCTGTGCTACGCCGCCT---CCGTG------------------------
droEug1	scf7180000409682:27538-27629 +		TAA--ATTTTTGAATTGTAAAGAAGTTT----------------TTAAAGGATTCACCATGCTGAAAGGTATACA--AGTTAAATATTAATCT---TAATT-----------AATGTGCATCCGG--------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302113:2811961-2812046 -		ATTAAATATTTTAATA----------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTTAC-ACACCTGCAGCCCTTGTGATTTTCTTTGGCCTCCTGGCTCTGTGCCACGCCGCCT---CCCTG------------------------
droTak1	scf7180000415286:592434-592504 -		TAA--ATTTTTGAAACGAAAAGAAGCTA----------------CCAAAGGATACACCATGCTGAAAGGTAAACA--ACTTGAAAATTAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491280:591086-591226 -		TTA--ATATTTGAATCGAGAAGAAGCGT----------------TTAAAGGATCCACCATGCTAAAAGGTAAACG--GTTTGACAGTTAACCTAC---ATC-----------ATGGAGTGTTCTA------------------AGTGAATTGTGAGGAAAAATGA---------------------------------------------TCAGAAACT---------------------------------------------------------------AAAGAATTGG--AT-ATTTTAA----------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000758153:943-1033 -		TTA--ATTTTTGAATCGAAAAGAAGCTA----------------TTAAAGGATTCACCATGCTGAAAGGTAAACA--ACTTGAAAGTTAATCT---GAATT-----------ATTGTGCGTTCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454055:2456848-2456938 -		TTA--ATTTTTGAACCAAAAAGAAGCTA----------------CTAGAGGATACACCATGCTGAAAGGTAAACA--AGTTGATAAATAATCT---CAAGG-----------ACTGTGCGTTCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302253:125456-125725 +		TAA--ATTTTTGAATCGAAAGGAAGTAA----------------CAAAAGGATTCAACATGCTGAAAGGTAACTA--AGA-----G-------ATCC-------------AGATTCC-----TTG---TGTCTAAATGGAGATAATT----------AAATATACA-----------------T--TTAGCA---------------------TCTAGGATATATCTTGTTCTCAATATTAATTAAAAAGTTCATAGAACTTCATTTCAA--------GTTTAAAAAATTGGCATT-ATCTTAA-------AGTTACTAACC------------ACAAATGCCCTTTGCAGCCCTCGTGATCTTCTTCGGCCTCTTGGCCCTAGCCATTGCTGCCT---CCTTG------------------------
droAna3	scaffold_13340:16771484-16771739 +		TTA--ATTTTTCCCCTGAAAAGAAGTTT----------------GGAATAGATCTACTATGCAAAAAGGTAAACT--TACCCAGTAAATACATTTTT-------------AGATTTT-----TCC---T---------------GTGGATTATTAGG-AATTTAA---------------------------------------------CTGAAAAGGATGA---TTGCTGTTA-------------------TAAAATTTTGGAGCAA--------AAAGAAA-----------AAATTCATCTATATAGATTCCAAATTGTTTATTTA-----------TCGTTTTAGGTTACCTGATTTTCGCGGGTCTTTTGGTTTTCGCCTATGTTGCCC---AGGCCATAGCTGA-T--------------
droBip1	scf7180000396424:286822-287065 +		TTA--ATTTTTCCCCTGAAAAGAAGTTC----------------GGAAAGGATCTACTATGCAAAAAGGTAAACT--TC---AGCAGTAAACT---GGAGCATTTTTTTCAGATTTT-----CCA---T---------------ATGGATTATTAGG-AATACGT-------------------------C-AAA------------------AAAAGGATCA---TTGCTGTTA-----------------------------------------------------------AT-A-CTTAA-------AGTTGTTAACGGTTTGAT---------A-ATTCTTTGTAGGTTACCTGATTTTCGCGGGACTTTTGGTTCTGGCCTACGCCGCCA---CGACAATAGCTGA-TGATGACTCG-----
dp5	2:4921097-4921272 +		CAG--ATTTTCAAATTGAACACAAACTTGGGATAACCTACCTTCAGAAAGGATTCACTATGCAAAAAAGTATGTT-----------------------GGTACTCATTTCGAATTAT-----TCA--------------------------------------------------------------------------------------------------------------------------------------------------------TATTTACAAAATTAA--AT--------------------------------------------ATCCTTTGCAGCTCTTTTGATATTCCTTGGGCTCTTGGGTGTGTGCTGGAGCGCCAGCCTTGTG------------------------
droPer2	scaffold_19:619011-619186 +		CAG--ATTTTCAAATTGAACACAAACTTTGGATAACCTACCTTCAGAAAGGATTCACTATGCAAAAAAGTATGTT-----------------------GGTACTCATTTCGAATTAT-----TCA--------------------------------------------------------------------------------------------------------------------------------------------------------TATTTACAAAATTAA--AT--------------------------------------------ATCCTTTGCAGCTCTTTTGATATTCCTTGGGCTCTTGGGTGTGTGCTGGAGCGCCAGCCTTGTG------------------------
droMoj3	scaffold_6540:29921225-29921289 +		A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTCCTTGGCCTCTTGGCGCTCAGCTGCGCTGCCA---GCTTG-TACCTGGACGAGGTCTCCACAAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TAA--ATTTTTGTATCGAGAAGAAGCTG----------------ATAAAGGATTCACCATGCTGAAAGGTAAACA--TCCTTAGGAATAATCTACTCAACT-----------ATTGTGCGTTCGG--------------------TG----------AAATTCAA---------------------------------------------CCTGGAACTATGA-----------------------------------------------ACCTGAT-------------------AATCTTAATCACGCATACTATTAATCACTCGACTATTTTCAAAT-CCCCCTGCAGCAGTCATCATTTTCTTTGGCATCCTGGCTCTGGGCTACGCCGCCT---CCGTG------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......TTTTGTATCGAGAAGAAGCTG----------------................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGCTCTGGGCTACGCCGC..................................	23	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATCGAGAAGAAGCTG----------------ATAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGGC..........................................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ATTTTCTTTGGCATCCTGGCTCTGGGC..........................................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GAAGAAGCTG----------------ATAAAGGATTC.....................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TTTTCTTTGGCATCCTGGCTCTGGGCT.........................................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATCGAGAAGAAGCTG----------------ATAAAGGATTC.....................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TGTATCGAGAAGAAGCTG----------------................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGGCTA........................................	24	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGCTCTGGGCTAC.......................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TTTTGTATCGAGAAGAAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................CATCCTGGCTCTGGGCTACGCCGC..................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGGCTAC.......................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATTTTTGTATCGAGAAGAAGCTG----------------A...............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TCTTTGGCATCCTGGCTCTG.............................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATCGAGAAGAAGCTG----------------ATAAAGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................CTGGCTCTGGGCTACGCCGCCT---.............................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TTTGTATCGAGAAGAAGCTG----------------AC..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AA--ATTTTTGTATCGAGAAGAAGCTG----------------................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AA--ATTTTTGTATCGAGAAGAAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TTGTATCGAGAAGAAGCTG----------------AG..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTTTTGTATCGAGAAGAAGCTG----------------................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CGAGAAGAAGCTG----------------ATAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AGAAGAAGCTG----------------ATAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATTTTTGTATCGAGAAGAAGCTG----------------................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TAAAGGATTCACCATGCTGAAA.........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................AAGGATTCACCATGCTGAAAGC.......................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGCTCTGGGCTACGCC....................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................ATAAAGGATTCACCATGCTGA...........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCTG.............................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................CAA---------------------------------------------CCTGGAACTATGA-----------------------------------------------ACCTGAT-------------------....................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TCCTGGCTCTGGGCTACGC.....................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TCTTTGGCATCCTGGCTCTGGGCTAC.......................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TTTGTATCGAGAAGAAGCTG----------------................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGCTCTGGGCTACGC.....................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGCTCTGGGCTACGCCGCCT---CC...........................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GTATCGAGAAGAAGCTG----------------ATAAAGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TTTGTATCGAGAAGAAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGCTCTGGGCTACGCCGG..................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GTCATCATTTTCTTTGGC.........................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TTTGGCATCCTGGCTCTG.............................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................CATCCTGGCTCTGGGCTACGCCGCCT---C............................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AGTCATCATTTTCTTTGGC.........................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TTGGCATCCTGGCTCTGGGCTACGCCG...................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TAA--ATTTTTGAATCGAGAAGAAGCTG----------------ATAAAGGATTCACCATGCTGAAAGGTAAACA--TCCTTAGGAATAATCTACTCAACT-----------ATTGTGCGTTCGG--------------------TG----------AAATTCAA---------------------------------------------CCTGGAACTATGA-----------------------------------------------GCTTTAT-------------------AATCTTAATCACGCATACTATTAATCACTCGACTATTTTCGAAT-CCCCCTGCAGCAGTCATCATTTTCTTTGGCATCCTGGCTCTGGGCTACGCCGCCT---CCGTG------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGCTCTGGGCTACGC.....................................	20	1	9.00	9	0	0	9	0
...........................G----------------ATAAAGGATTCACCATGCT.............................................................................................................................................................................................................................................................................................................................................................................	20	1	6.00	6	0	0	6	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGGCTACGC.....................................	27	1	5.00	5	0	0	5	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGGCTAC.......................................	25	1	4.00	4	0	0	4	0
.......TTTTGAATCGAGAAGAAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	4	0
..................GAAGAAGCTG----------------ATAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	3	0
........TTTGAATCGAGAAGAAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	3	0
............................................ATAAAGGATTCACCATGCTGAAAGCA......................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	3	0
...................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGCTCTGGGCTAC.......................................	18	1	3.00	3	0	0	3	0
...................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGCTCTGGGCTACGCCGC..................................	23	1	3.00	3	0	0	3	0
...............CGAGAAGAAGCTG----------------ATAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	3	0
............................................ATAAAGGATTCACCATGCT.............................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
.....ATTTTTGAATCGAGAAGAAGCTG----------------................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0
..................................................................................................................................................................................................................................................................................................................................................................................CATCCTGGCTCTGGGCTAC.......................................	19	1	2.00	2	0	0	2	0
...............CGAGAAGAAGCTG----------------ATAAAGGATTCACC..................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	2	0
....................AGAAGCTG----------------ATAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
.....ATTTTTGAATCGAGAAGAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCT..............................................	18	1	2.00	2	0	0	2	0
.............................................................................................................................................................................................................................................................................................................................................................................TTTGGCATCCTGGCTCTGGGCTACGC.....................................	26	1	2.00	2	0	0	2	0
.......TTTTGAATCGAGAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
..............................................AAAGGATTCACCATGCTGA...........................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGG...........................................	21	1	2.00	2	0	0	2	0
...............CGAGAAGAAGCTG----------------ATAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0
..................................................................................................................................................................................................................................................................................................................................................................................CATCCTGGCTCTGGGCTACGCCGC..................................	24	1	2.00	2	0	0	2	0
.............................................TAAAGGATTCACCATGCT.............................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
........TTTGAATCGAGAAGAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGGCT.........................................	23	1	2.00	2	0	0	2	0
.......TTTTGAATCGAGAAGAAGCTG----------------................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................ATCATTTTCTTTGGCATCCTGGCTCTG.............................................	27	1	1.00	1	0	0	1	0
............................................ATAAAGGATTCACCATGCTGAAA.........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
................GAGAAGAAGCTG----------------ATAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................GCATCCTGGCTCTGGGCTACGCCGC..................................	25	1	1.00	1	0	0	1	0
..................................................GATTCACCATGCTGAAAGCA......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...........................G----------------ATAAAGGATTCACCATGCTGA...........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
..A--ATTTTTGAATCGAGAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.....ATTTTTGAATCGAGAAGAAGCTG----------------AT..............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.......................AGCTG----------------ATAAAGGATTCACCATGCT.............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.....ATTTTTGAATCGAGAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..........................TG----------------ATAAAGGATTCACCATGCTGAAAGC.......................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................CATTTTCTTTGGCATCCTGGCT................................................	22	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................ATCATTTTCTTTGGCATC......................................................	18	1	1.00	1	0	0	1	0
............................................ATAAAGGATTCACCATGCTG............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................CATCATTTTCTTTGGCATC......................................................	19	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................CCTGGCTCTGGGCTACGCCGC..................................	21	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGGCTA........................................	24	1	1.00	1	0	0	1	0
.........................CTG----------------ATAAAGGATTCACCATGCTGAAAGC.......................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0
.AA--ATTTTTGAATCGAGAAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
..................GAAGAAGCTG----------------ATAAAGGATTCAC...................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...................AAGAAGCTG----------------ATAAAGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGGCTACG......................................	26	1	1.00	1	0	0	1	0
..................GAAGAAGCTG----------------ATAAAGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
......TTTTTGAATCGAGAAGAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.....ATTTTTGAATCGAGAAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGGC..........................................	22	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................TTGGCATCCTGGCTCTGG............................................	18	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................AGCAGTCATCATTTTCTTTGGC.........................................................	22	1	1.00	1	0	0	1	0
..........................TG----------------ATAAAGGATTCACCATGCTGAAA.........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................ATTTTCTTTGGCATCCTGGCTCTGGGCT.........................................	28	1	1.00	1	0	0	1	0
.......TTTTGAATCGAGAAGAAGCTG----------------AT..............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGGCTACGCCG...................................	29	1	1.00	1	0	0	1	0
...............................................AAGGATTCACCATGCTGAAA.........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.........TTGAATCGAGAAGAAGCTG----------------ATA.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.......................AGCTG----------------ATAAAGGATTCACCATGCTGA...........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
................GAGAAGAAGCTG----------------ATAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................TTTGGCATCCTGGCTCTGGGCT.........................................	22	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................CAGTCATCATTTTCTTTGGCATCCTGG..................................................	27	1	1.00	1	0	0	1	0
...........................G----------------ATAAAGGATTCACCATGCTGAAA.........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..............................................AAAGGATTCACCATGCTGAAAGT.......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
............................................ATAAAGGATTCACCATGCTGAA..........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
..A--ATTTTTGAATCGAGAAGAAGCTG----------------................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................TGGCATCCTGGCTCTGGGC..........................................	19	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................GGCATCCTGGCTCTGGGCTACGC.....................................	23	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................TTGGCATCCTGGCTCTGGGCTA........................................	22	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................GCATCCTGGCTCTGGGCTA........................................	19	1	1.00	1	0	0	1	0
...............CGAGAAGAAGCTG----------------ATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................TTCTTTGGCATCCTGGCTCTGGGCTAC.......................................	27	1	1.00	1	0	0	1	0
.AA--ATTTTTGAATCGAGAAGAAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................TTGGCATCCTGGCTCTGGG...........................................	19	1	1.00	1	0	0	1	0
.AA--ATTTTTGAATCGAGAAGAAGCTG----------------AT..............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................CATCATTTTCTTTGGCATCCTGGCT................................................	25	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................TTGGCATCCTGGCTCTGGGCTAC.......................................	23	1	1.00	1	0	0	1	0
......................AAGCTG----------------ATAAAGGATTCACCA.................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................CATCCTGGCTCTGGGCTA........................................	18	1	1.00	1	0	0	1	0
......................AAGCTG----------------ATAAAGGATTCACCATGCTGA...........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
...........................G----------------ATAAAGGATTCACCATGCTGAAAGCA......................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
...............CGAGAAGAAGCTG----------------ATAAA...........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCTG.............................................	19	1	1.00	1	0	0	1	0
....................AGAAGCTG----------------ATAAAGGATTCACCATGC..............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
............................................ATAAAGGATTCACCATGCTGA...........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...................................................ATTCACCATGCTGAAAGCA......................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	1	0

dm3

TAA--ATTTTTGAATCGAGAAGAAGCTG----------------ATAAAGGAATCACCATGCTGAAAGGTAAACA--TCCTTAGGAATAATCTACTCAACT-----------ATAGTGCGTTCGA---------------TAAAGTG----------AATTTCTA-----------------------------GAATATTATCACATTTCCTGGAACTATGA-----------------------------------------------GTTTGAT-------------------AATCTTAATCACGCATACTATTTATCACTTGCCTAT--------TCTCCCTGCAGCACTCATCATTTTCTTTGGCATCCTGGCTCTGGGCTATGCCGCCT---CCGTG------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................GCTG----------------ATAAAGGAATCACCATGCT.............................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................ATAAAGGAATCACCATGC..............................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCATCCTGGCTCTGGGG..........................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CGAGAAGAAGCTG----------------ATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGCTCTGGGCTATGC.....................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TTGAATCGAGAAGAAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AATCGAGAAGAAGCTG----------------ATA.............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TTTTGAATCGAGAAGAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AGCACTCATCATTTTCTTTGGC.........................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..A--ATTTTTGAATCGAGAAGAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGCTCTGGGCTAT.......................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................G----------------ATAAAGGAATCACCATGCTGAAA.........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGCTCTGGGCTATGCCGCCT---CC...........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AGAAGAAGCTG----------------ATAAAGGAA.......................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TTTTGAATCGAGAAGAAGCTG----------------ATAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TAG--ATTTTTGAATCGCAAAGAAGCTG----------------CTAAAGGATTCACCATGCTGAAAGGTAAACA--TCCTTAGGAATAATCCACTCCACT-----------ACTGTGCGTTCGGTTGTGAC-AAAGGGACAAAGTG----------AAATTCACAGAATA-------ATATATTTATAGC-TAAAATACTATCATACTTCCTAGAACTATGA-----------------------------------------------ACTTAAT-------------------AATCTCAATCAC---------TATTCACTCGGATATTCGCTGATCCTCCCTGCAGCACTCATCATTTTCTTCGGCCTCCTGGCTCTGTGCTACGCCGCCT---CCGTG------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............CGCAAAGAAGCTG----------------CTAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	1	0	2	0	0	0
...............CGCAAAGAAGCTG----------------CTAAAG..........................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0	0	0
.....ATTTTTGAATCGCAAAGAAGCTG----------------CTA.............................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CATCATTTTCTTCGGCCTCCTGGC.................................................	24	1	2.00	2	0	2	0	0	0	0	0
..................................................GATTCACCATGCTGAAAGC.......................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................CGGCCTCCTGGCTCTGTGCTACGCC....................................	25	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................CTCCTGGCTCTGTGCTACGCCGCC.................................	24	1	1.00	1	0	1	0	0	0	0	0
............AATCGCAAAGAAGCTG----------------CTAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................CCTCCTGGCTCTGTGCTA........................................	18	1	1.00	1	0	0	0	1	0	0	0
................GCAAAGAAGCTG----------------CTAAAG..........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
..................AAAGAAGCTG----------------CTAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GCACTCATCATTTTCTTCGGC.........................................................	21	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CATCATTTTCTTCGGCCTCCTGGCT................................................	25	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CTTCGGCCTCCTGGCTCTGTGCTACGC.....................................	27	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................GGCTCTGTGCTACGCCGCCT---CC...........................	22	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATCATTTTCTTCGGCCTCCT....................................................	20	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GCACTCATCATTTTCTTCGGCC........................................................	22	1	1.00	1	0	0	0	1	0	0	0
..................AAAGAAGCTG----------------CTAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
.........................CTG----------------CTAAAGGATTCACCATG...............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TTTCTTCGGCCTCCTGGCTCTGTT...........................................	24	1	1.00	1	0	0	0	1	0	0	0
.......TTTTGAATCGCAAAGAAGCTG----------------CT..............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
...............CGCAAAGAAGCTG----------------CTAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
.....ATTTTTGAATCGCAAAGAAGCTG----------------CC..............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GCTCTGTGCTACGCCGCCT---CCGT.........................	23	1	1.00	1	0	1	0	0	0	0	0
.............ATCGCAAAGAAGCTG----------------CTAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
...........................G----------------CTAAAGGATTCACCATGCTGAAAGC.......................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ATTTTCTTCGGCCTCCTGGCTCTGT............................................	25	1	1.00	1	0	1	0	0	0	0	0
...............CGCAAAGAAGCTG----------------CTAAA...........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................CATTTTCTTCGGCCTCCTGG..................................................	20	1	1.00	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................ACTCATCATTTTCTTCGGCCTCCTGGC.................................................	27	1	1.00	1	0	0	0	1	0	0	0
..........................TG----------------CTAAAGGATTCACCATGCT.............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATCATTTTCTTCGGCCTCCTGG..................................................	22	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TCATTTTCTTCGGCCTCCTGG..................................................	21	1	1.00	1	0	0	0	1	0	0	0
...........................G----------------CTAAAGGATTCACCATGCC.............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................ACTCATCATTTTCTTCGGCCTCC.....................................................	23	1	1.00	1	0	1	0	0	0	0	0
.............ATCGCAAAGAAGCTG----------------CTAAAG..........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...............CGCAAAGAAGCTG----------------CTAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CATCATTTTCTTCGGCCTCCTGG..................................................	23	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TCTTCGGCCTCCTGGCTCTGTGCT.........................................	24	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TCTTCGGCCTCCTGGCTCTGTGCTC........................................	25	1	1.00	1	0	1	0	0	0	0	0
................GCAAAGAAGCTG----------------CTAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.............ATCGCAAAGAAGCTG----------------CTAAAGGATTCAC...................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
...............CGCAAAGAAGCTG----------------CTAAAGGATTCACCAT................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
.............ATCGCAAAGAAGCTG----------------CTAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0

droYak3

TAC--ATTTTTGAATCGAAAAGAAGCTG----------------ATAAAGGATTCACCATGCTGAAAGGTAAGCACATCCTTCGAAATAATCTACTCAACT-----------GTTGTGACTGGCG---------------TAAAGTG----------AAACTCATCGAATATTTACAAATACATTTTAAGCA--------------------------TATT------------------------------------------------ACATGAT-------------------AATCTTTATCACTATTACTATTAATCACTTGGATAT-------------TCGCAGGACTCATCATATTCTTTGGCCTGCTGGCTCTGTGCTACGCCGCCT---CCGTG------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................AAAAGAAGCTG----------------ATAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
............AATCGAAAAGAAGCTG----------------ATAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................ATTCTTTGGCCTGCTGGCTCTGTGCTA........................................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
....................AGAAGCTG----------------ATAAAGGATTCACCATGCT.............................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.............ATCGAAAAGAAGCTG----------------ATAAAGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
................GAAAAGAAGCTG----------------ATAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................AAAGAAGCTG----------------ATAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
....................AGAAGCTG----------------ATAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CATCATATTCTTTGGCCTGCTGGCTC...............................................	26	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................ATTCTTTGGCCTGCTGGCTCT..............................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.........TTGAATCGAAAAGAAGCTG----------------ATAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CATCATATTCTTTGGCCTGCTGGCTCT..............................................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
...............CGAAAAGAAGCTG----------------ATAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ATATTCTTTGGCCTGCTGGCTCTGTGCTA........................................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........................G----------------ATAAAGGATTCACCATGCT.............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................AAGGATTCACCATGCTGAAAGGACT....................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................CATATTCTTTGGCCTGCTGGCT................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........TTGAATCGAAAAGAAGCTG----------------ATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........GAATCGAAAAGAAGCTG----------------ATAAAGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................GAAAAGAAGCTG----------------ATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................CATATTCTTTGGCCTGCTG...................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................TAAAGGATTCACCATGCTGA...........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............CGAAAAGAAGCTG----------------ATAAAGGATTC.....................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATCATATTCTTTGGCCTGCTGGCTCT..............................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............ATCGAAAAGAAGCTG----------------ATAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................AGAAGCTG----------------ATAAAGGATTCACC..................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................AGGATTCACCATGCTGAAAGGACT....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................AAGAAGCTG----------------ATAAAGGATTCACCATG...............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GACTCATCATATTCTTTGGCCTGCTGGCT................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................GATTCACCATGCTGAAAGGACC....................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGCTGGCTCTGTGCTACGCC....................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............CGAAAAGAAGCTG----------------ATAAAGGATTCACC..................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............CGAAAAGAAGCTG----------------ATAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................AAGAAGCTG----------------ATAAAGGATTC.....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............CGAAAAGAAGCTG----------------ATAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................GCTG----------------ATAAAGGATTCACCATGCTG............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................AAGCTG----------------ATAAAGGATTCACCATGC..............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................GAAAAGAAGCTG----------------ATAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................GGCCTGCTGGCTCTGTGCTA........................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........TTGAATCGAAAAGAAGCTG----------------ATAAAA..........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........TTTGAATCGAAAAGAAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................GCTG----------------ATAAAGGATTCACCATGCT.............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ATATTCTTTGGCCTGCTGGCTC...............................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............AATCGAAAAGAAGCTG----------------ATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CTGTGCTACGCCGCCT---CCGT.........................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
........TTTGAATCGAAAAGAAGCTG----------------ATAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................AAAGGATTCACCATGCTGAAA.........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................AAAGGATTCACCATGCTGAAAGGA......................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
................GAAAAGAAGCTG----------------ATAAAGGAT.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................AAGAAGCTG----------------ATAAAGGATT......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.....ATTTTTGAATCGAAAAGAAGCTG----------------AG..............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................AAAGGATTCACCATGCTGAAAGGAC.....................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............ATCGAAAAGAAGCTG----------------ATAAAGGATTCACC..................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................CTG----------------ATAAAGGATTCACCATGCTGA...........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............ATCGAAAAGAAGCTG----------------ATAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TTGGCCTGCTGGCTCTGTGCTACGCCGC..................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................GATTCACCATGCTGAAAGGACT....................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

TAA--ATTTTTGAATTGTAAAGAAGTTT----------------TTAAAGGATTCACCATGCTGAAAGGTATACA--AGTTAAATATTAATCT---TAATT-----------AATGTGCATCCGG--------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATTAAATATTTTAATA----------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTTAC-ACACCTGCAGCCCTTGTGATTTTCTTTGGCCTCCTGGCTCTGTGCCACGCCGCCT---CCCTG------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAA--ATTTTTGAAACGAAAAGAAGCTA----------------CCAAAGGATACACCATGCTGAAAGGTAAACA--ACTTGAAAATTAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTA--ATATTTGAATCGAGAAGAAGCGT----------------TTAAAGGATCCACCATGCTAAAAGGTAAACG--GTTTGACAGTTAACCTAC---ATC-----------ATGGAGTGTTCTA------------------AGTGAATTGTGAGGAAAAATGA---------------------------------------------TCAGAAACT---------------------------------------------------------------AAAGAATTGG--AT-ATTTTAA----------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTA--ATTTTTGAATCGAAAAGAAGCTA----------------TTAAAGGATTCACCATGCTGAAAGGTAAACA--ACTTGAAAGTTAATCT---GAATT-----------ATTGTGCGTTCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTA--ATTTTTGAACCAAAAAGAAGCTA----------------CTAGAGGATACACCATGCTGAAAGGTAAACA--AGTTGATAAATAATCT---CAAGG-----------ACTGTGCGTTCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TAA--ATTTTTGAATCGAAAGGAAGTAA----------------CAAAAGGATTCAACATGCTGAAAGGTAACTA--AGA-----G-------ATCC-------------AGATTCC-----TTG---TGTCTAAATGGAGATAATT----------AAATATACA-----------------T--TTAGCA---------------------TCTAGGATATATCTTGTTCTCAATATTAATTAAAAAGTTCATAGAACTTCATTTCAA--------GTTTAAAAAATTGGCATT-ATCTTAA-------AGTTACTAACC------------ACAAATGCCCTTTGCAGCCCTCGTGATCTTCTTCGGCCTCTTGGCCCTAGCCATTGCTGCCT---CCTTG------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTA--ATTTTTCCCCTGAAAAGAAGTTT----------------GGAATAGATCTACTATGCAAAAAGGTAAACT--TACCCAGTAAATACATTTTT-------------AGATTTT-----TCC---T---------------GTGGATTATTAGG-AATTTAA---------------------------------------------CTGAAAAGGATGA---TTGCTGTTA-------------------TAAAATTTTGGAGCAA--------AAAGAAA-----------AAATTCATCTATATAGATTCCAAATTGTTTATTTA-----------TCGTTTTAGGTTACCTGATTTTCGCGGGTCTTTTGGTTTTCGCCTATGTTGCCC---AGGCCATAGCTGA-T--------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........TTTCCCCTGAAAAGAAGTTT----------------GG..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0
..A--ATTTTTCCCCTGAAAAGAAGTTT----------------GGA.............................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CGCGGGTCTTTTGGTTTTCGCC..........................................	22	1	2.00	2	0	2	0	0	0	0
.......................AGTTT----------------GGAATAGATCTACT..................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGCCC---AGGCCATAGCT..................	21	1	2.00	2	0	2	0	0	0	0
.....................GAAGTTT----------------GGAATAGATCTACT..................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0
.................AAAAGAAGTTT----------------GGAATAGATC......................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CTATGTTGCCC---AGGCCATAGCTGA-T--------------	25	1	2.00	2	0	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TTTCGCCTATGTTGCCC---AGGCC........................	22	1	2.00	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGCCC---AGGCCATAGCT..................	20	1	2.00	2	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CGCGGGTCTTTTGGTTTTCGG...........................................	21	1	1.00	1	0	1	0	0	0	0
..................................................GATCTACTATGCAAAAAGGT......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GGTTACCTGATTTTCGCGGGT.........................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GTTTTCGCCTATGTTGCCC---AGGC.........................	23	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................GGTTTTCGCCTATGTTGCCC---.............................	20	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ATTTTCGCGGGTCTTTTGGTTTTC.............................................	24	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ATTTTCGCGGGTCTTTTGGT.................................................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GTCTTTTGGTTTTCGCCTATGTT....................................	23	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTTTTCGCCTATGTTGCC.................................	23	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CCTATGTTGCCC---AGGCCATA.....................	20	1	1.00	1	0	1	0	0	0	0
...................................................ATCTACTATGCAAAAAGGTT.....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TTTCGCGGGTCTTTTGGTTTTC.............................................	22	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TTCGCCTATGTTGCCC---AGGCC........................	21	1	1.00	1	0	1	0	0	0	0
........TTTCCCCTGAAAAGAAGTTT----------------GGA.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TTTCGCGGGTCTTTTGGTT................................................	19	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CGCGGGTCTTTTGGTTTTCGC...........................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GTTTTCGCCTATGTTGCCC---AGGCC........................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CTATGTTGCCC---AGGCCATAGCT..................	22	1	1.00	1	0	1	0	0	0	0
........TTTCCCCTGAAAAGAAGTTT----------------GGAATA..........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGCCTATGTTGCCC---AGGCC........................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................GGGTCTTTTGGTTTTCGCCT.........................................	20	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................GGGTCTTTTGGTTTTCGC...........................................	18	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CCTATGTTGCCC---AGGCCATAGCTGA-T--------------	26	1	1.00	1	0	1	0	0	0	0
................GAAAAGAAGTTT----------------GGAATAGATCTACC..................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...................AAGAAGTTT----------------GGAATAGATC......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TTCGCGGGTCTTTTGGTTTTC.............................................	21	1	1.00	1	0	1	0	0	0	0
....................AGAAGTTT----------------GGAATAGATC......................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
...............................................ATAGATCTACTATGCAAAAAG........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................AAGTTT----------------GGAATAGATCTACT..................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TTCGCGGGTCTTTTGGTTTTCGCCT.........................................	25	1	1.00	1	0	1	0	0	0	0
............................................GGAATAGATCTACTATGCAAAAAGGT......................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
................................................TAGATCTACTATGCAAAAAGGC......................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................GAAAAGAAGTTT----------------GGAATA..........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GATTTTCGCGGGTCTTTTGGT.................................................	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GATTTTCGCGGGTCTTTTGGTT................................................	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CTATGTTGCCC---AGGCCATA.....................	19	1	1.00	1	0	1	0	0	0	0
...................AAGAAGTTT----------------GGAATAGAT.......................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
.......TTTTCCCCTGAAAAGAAGTTT----------------GGAATA..........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TTTCGCGGGTCTTTTGGT.................................................	18	1	1.00	1	0	1	0	0	0	0
........................GTTT----------------GGAATAGATCTACTATGCAAA...........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AGGTTACCTGATTTTCGCGGGC.........................................................	22	1	1.00	1	0	1	0	0	0	0

droBip1

TTA--ATTTTTCCCCTGAAAAGAAGTTC----------------GGAAAGGATCTACTATGCAAAAAGGTAAACT--TC---AGCAGTAAACT---GGAGCATTTTTTTCAGATTTT-----CCA---T---------------ATGGATTATTAGG-AATACGT-------------------------C-AAA------------------AAAAGGATCA---TTGCTGTTA-----------------------------------------------------------AT-A-CTTAA-------AGTTGTTAACGGTTTGAT---------A-ATTCTTTGTAGGTTACCTGATTTTCGCGGGACTTTTGGTTCTGGCCTACGCCGCCA---CGACAATAGCTGA-TGATGACTCG-----	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAG--ATTTTCAAATTGAACACAAACTTGGGATAACCTACCTTCAGAAAGGATTCACTATGCAAAAAAGTATGTT-----------------------GGTACTCATTTCGAATTAT-----TCA--------------------------------------------------------------------------------------------------------------------------------------------------------TATTTACAAAATTAA--AT--------------------------------------------ATCCTTTGCAGCTCTTTTGATATTCCTTGGGCTCTTGGGTGTGTGCTGGAGCGCCAGCCTTGTG------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............ATTGAACACAAACTTGGGATAAC........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CTTTTGATATTCCTTGGGCTCTTGGGT................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	2
......................AAACTTGGGATAACCTACCTTCAGA.............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............ATTGAACACAAACTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GATATTCCTTGGGCTCTTGG..................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............ATTGAACACAAACTTGGGATAACCTA.....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........AAATTGAACACAAACTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ATATTCCTTGGGCTCTTGGGTGTGTG...........................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CTTTTGATATTCCTTGGGCTCT.....................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............AATTGAACACAAACTTGGGATAAC........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

CAG--ATTTTCAAATTGAACACAAACTTTGGATAACCTACCTTCAGAAAGGATTCACTATGCAAAAAAGTATGTT-----------------------GGTACTCATTTCGAATTAT-----TCA--------------------------------------------------------------------------------------------------------------------------------------------------------TATTTACAAAATTAA--AT--------------------------------------------ATCCTTTGCAGCTCTTTTGATATTCCTTGGGCTCTTGGGTGTGTGCTGGAGCGCCAGCCTTGTG------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............AATTGAACACAAACTTTGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	10.00	10	10	0	0	0	0	0
............AATTGAACACAAACTTTGGATAACCT......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	9.00	9	9	0	0	0	0	0
...............TGAACACAAACTTTGGATAACCT......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	8.00	8	8	0	0	0	0	0
................GAACACAAACTTTGGATAACC.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	5.00	5	5	0	0	0	0	0
.............ATTGAACACAAACTTTGGATAACC.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	5	0	0	0	0	0
...............TGAACACAAACTTTGGATAACC.......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	4	0	0	0	0	0
............AATTGAACACAAACTTTGGATAACC.......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	4	0	0	0	0	0
.............ATTGAACACAAACTTTGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	4	0	0	0	0	0
............AATTGAACACAAACTTTGGATAAC........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0
.................AACACAAACTTTGGATAACCT......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0
.............ATTGAACACAAACTTTGG.............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
.............ATTGAACACAAACTTTGGATAACCT......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................CTCTTTTGATATTCCTTGGGC........................................................	21	1	2.00	2	2	0	0	0	0	0
...............................ATAACCTACCTTCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0
...............TGAACACAAACTTTGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
............AATTGAACACAAACTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
..............TTGAACACAAACTTTGGATAACC.......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
..........CAAATTGAACACAAACTTTGGATAACC.......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
................GAACACAAACTTTGGATAACCTACCTT.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
..................ACACAAACTTTGGATAACCT......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
..............................................AAAGGATTCACTATGCAA............................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
...................CACAAACTTTGGATAACC.......................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
...................CACAAACTTTGGATAACCT......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.................AACACAAACTTTGGATAACC.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
..................ACACAAACTTTGGATAACCTACCT..................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
...............TGAACACAAACTTTGGATAAC........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................ATTCCTTGGGCTCTTGGGT................................................	19	1	1.00	1	0	0	1	0	0	0
CAG--ATTTTCAAATTGAACAC......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.............ATTGAACACAAACTTTGGATAAC........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..G--ATTTTCAAATTGAACACAAACTTTGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...............TGAACACAAACTTTGGATAACCTACCTT.................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............TGAACACAAACTTTGGATAACCTACCT..................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............ATTGAACACAAACTTTGGATAACCG......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GATATTCCTTGGGCTCTTGGGTGT..............................................	24	1	1.00	1	0	0	1	0	0	0
...................................CCTACCTTCAGAAAGGATTCACTATGC..............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
...............................ATAACCTACCTTCAGAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TTGGGTGTGTGCTGGAGCGCC.................................	21	1	1.00	1	0	0	1	0	0	0
..G--ATTTTCAAATTGAACACAAACTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................CACAAACTTTGGATAACCTACCT..................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................TTTGGATAACCTACCTTCAGAAAGGATTC.....................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TATTCCTTGGGCTCTTGGGTGTGTG...........................................	25	1	1.00	1	1	0	0	0	0	0
.............ATTGAACACAAACTTTGGA............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TGATATTCCTTGGGCTCTTGGGTGT..............................................	25	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GATATTCCTTGGGCTCTTGGGTGTGTG...........................................	27	1	1.00	1	0	0	1	0	0	0
...............TGAACACAAACTTTGGATAACCTACC...................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................CACAAACTTTGGATAACCTACCTT.................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............ATTGAACACAAACTTTGGATAACCTACCT..................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
........TTCAAATTGAACACAAACT.................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droMoj3

A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTCCTTGGCCTCTTGGCGCTCAGCTGCGCTGCCA---GCTTG-TACCTGGACGAGGTCTCCACAAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

-9.8	-9.6	-9.4	-9.1

dsi_7223

3r:22021605-22021732 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads