ID:

dsi_7202

Coordinate:

3l:16217621-16217770 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGGCAATTCTAATCAATGACCAAAGATCGTACAATTATAAATCGATATCTTAGGCGAAAAACATTTGTTTGACCCTTAAATATTAAAAACATCCAAGGTTTGGTTGTTCGTAATCGGTGTAACAACGCGTTTGGACTTTGCATTCATGTTTTACCTAATAATAATCCAATAATAATTTACTCCTTGTCTCTGCTTTACAGAAGCCTTGCTGCAGTCGCGTCCATTACCTCACATTCCGGCCGGCAGTACG ************************************************..............((((..(((...((((((((((((((((.(((((((((((((((((....)))....))))).))....))))))).....))))))).................))))).))))......)))........))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
............................................................................................................................................................................................TGTACTTTACAGAAGTCTTGCT........................................	22	3	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................CTTGCTGCAGTCGCGTCC............................	18	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................TTTCCTCACATTCCGTCCGT.......	20	3	11	0.18	2	0	0	2	0	0	0	0
....................................................................................................................TTGAAACAACGCGGTTGGAC..................................................................................................................	20	3	6	0.17	1	0	0	0	0	1	0	0
................................................................................................GGTTTGGCTGTTCGTCA.........................................................................................................................................	17	2	17	0.12	2	0	0	0	2	0	0	0
..................................................................................................................................................................................................................GCAGTCGCGGCCGTTAC.......................	17	2	9	0.11	1	0	0	0	0	0	1	0
........................................................................................................TGTTCGTAACTGTTGTAACA..............................................................................................................................	20	3	9	0.11	1	0	0	1	0	0	0	0
......................................................................................................................GAAACAACGCGGTTGGA...................................................................................................................	17	2	10	0.10	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................CCTCACATTCCGTCCGT.......	17	2	10	0.10	1	0	0	1	0	0	0	0
............................................................................................CCAAGGGTTGGCTGTTCGC...........................................................................................................................................	19	3	15	0.07	1	1	0	0	0	0	0	0
..........................................................................................................................TAACGCGTTTGGACTG................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	1

Anti-sense strand reads

ACCGTTAAGATTAGTTACTGGTTTCTAGCATGTTAATATTTAGCTATAGAATCCGCTTTTTGTAAACAAACTGGGAATTTATAATTTTTGTAGGTTCCAAACCAACAAGCATTAGCCACATTGTTGCGCAAACCTGAAACGTAAGTACAAAATGGATTATTATTAGGTTATTATTAAATGAGGAACAGAGACGAAATGTCTTCGGAACGACGTCAGCGCAGGTAATGGAGTGTAAGGCCGGCCGTCATGC ************************************************..............((((..(((...((((((((((((((((.(((((((((((((((((....)))....))))).))....))))))).....))))))).................))))).))))......)))........))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
..................................................................................................................GCGGCATTGTAGCGCAAACC....................................................................................................................	20	3	6	0.17	1	1	0	0
..................................AATATTTAGGTATCGAAGCC....................................................................................................................................................................................................	20	3	12	0.08	1	0	0	1
..........................................................................................................................GTTGCGCTGACCTGAAA...............................................................................................................	17	2	19	0.05	1	1	0	0
..........................................................................................................................................................................................................GGGAACGAGGTCAGTGCA..............................	18	3	20	0.05	1	0	1	0
..............................................................................ATATAATTTTTGCAGGT...........................................................................................................................................................	17	2	20	0.05	1	0	1	0
...............................................................................................................................................................................................................................AAAGGAGTGTAAGGCAG..........	17	2	20	0.05	1	1	0	0

Generated: 04/24/2015 at 03:14 AM