dsi_7188

five_prime_UTR [3r_6772446_6772932_+]; exon [3r_6772446_6772932_+]; intron [3r_6772933_6774488_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTTACATTTCCAAGGATACGCTCTCAGCCGCTCTCTCTCGATCGATACTGGTAATTAGCTGGCGTCCTCTCTTTGTGGAAGTGTCATTCCATTCCATGGACGAAACGAAAACGAAATCGATGGCAATGGCTGGTGAACAAAAGCGGAAATATGTGCATTTTTAAATTGTGTGTGTCTGTAATTATGTGAATAATAAGCAGCAGAAAAAAAATCGTACAATAAGTGGCAAGATCAGCGACATTAACGCACA ************************************************((.((((((((.(((((.......((((((......)))))).....)))))...(((........))).......))))))))..))....(((((.((((..(((.........))))))).))))).(((((....)))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	M023 head	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
.............................................................................................................................ATGGCTGGTGAACAAAAGCGG........................................................................................................	21	0	1	3.00	3	3	0	0	0	0	0
......................................CGATCGATACTGGTAATTAG................................................................................................................................................................................................	20	0	1	2.00	2	2	0	0	0	0	0
............AGGATACGCTCTCAGCCGCTTTT.......................................................................................................................................................................................................................	23	2	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................TGAACAAAAGCGGAAATATG.................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................AGCAGCAGAAAAAAAATCGTA..................................	21	0	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................TGGCTGGTGAACAAAAGCGGTT......................................................................................................	22	2	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................GGCAATGGCTGGTGAACAAAAGCGGAAA.....................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
.............................................................................................................AACGAAATCGATGGCAATGG.........................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
..TACATTTCCAAGGATACGCTC...................................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
.................................TCTCTCGATCGATACTGGTAATTAGCT..............................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................ACAATTCGTGGCATGATCAGCGA............	23	3	1	1.00	1	0	0	0	1	0	0
..............................................................................................................CCGAAATCGATGGCAAT...........................................................................................................................	17	1	8	0.13	1	0	0	1	0	0	0
...............................TCTCTCGTGATCGATAGTG........................................................................................................................................................................................................	19	3	9	0.11	1	0	0	0	1	0	0
.........................................TCGATTCTGGTAATTGG................................................................................................................................................................................................	17	2	20	0.10	2	0	0	0	0	0	2
...................................................................................TCATACCATTCCTTGGA......................................................................................................................................................	17	2	10	0.10	1	0	0	0	0	1	0

AAATGTAAAGGTTCCTATGCGAGAGTCGGCGAGAGAGAGCTAGCTATGACCATTAATCGACCGCAGGAGAGAAACACCTTCACAGTAAGGTAAGGTACCTGCTTTGCTTTTGCTTTAGCTACCGTTACCGACCACTTGTTTTCGCCTTTATACACGTAAAAATTTAACACACACAGACATTAATACACTTATTATTCGTCGTCTTTTTTTTAGCATGTTATTCACCGTTCTAGTCGCTGTAATTGCGTGT ************************************************((.((((((((.(((((.......((((((......)))))).....)))))...(((........))).......))))))))..))....(((((.((((..(((.........))))))).))))).(((((....)))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
................TTGCGAGAGTCGGCGAGAGAGA....................................................................................................................................................................................................................	22	1	1	2.00	2	2	0	0
.......................................................................................AGGTATGGTAACTGCTTT.................................................................................................................................................	18	2	1	1.00	1	0	0	1
......AATGGTTCCTATGCGAGA..................................................................................................................................................................................................................................	18	1	1	1.00	1	0	1	0
.................TGCGAGAGTCGGCGAGAGAGA....................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0
..........TATCCTATGCGAGAGTCGGCGA..........................................................................................................................................................................................................................	22	2	1	1.00	1	1	0	0
......................................................TTTCGACCGCAGGAGAGAAA................................................................................................................................................................................	20	2	1	1.00	1	1	0	0
............................................................................................AGGTACCTGCTTTGCTTTTGC.........................................................................................................................................	21	0	1	1.00	1	1	0	0
..............ATATGCGAGAGTCGGCGAGAGA......................................................................................................................................................................................................................	22	1	1	1.00	1	1	0	0
....GGAATGGTTCCTATGCGAG...................................................................................................................................................................................................................................	19	2	2	0.50	1	0	1	0
.....................................................................................................CCTTGCATTTGCTGTAGCTA.................................................................................................................................	20	3	8	0.38	3	0	3	0
.......ATGGTTCCTACGCGAGA..................................................................................................................................................................................................................................	17	2	3	0.33	1	0	1	0
.......ATGGTTCCTATGCGAGAT.................................................................................................................................................................................................................................	18	2	5	0.20	1	0	1	0
......AATGGTTCCTACGCGAG...................................................................................................................................................................................................................................	17	2	7	0.14	1	0	1	0
...........................................................................................................................................................................................................TTTTTATTAGCATGTCAT.............................	18	2	15	0.13	2	0	2	0
.........GGTTCCTACGCGAGA..................................................................................................................................................................................................................................	15	1	11	0.09	1	0	1	0

Species	Coordinate	ID	Alignment
droSim2	3r:6772883-6773132 +	dsi_7188	T--TTACATT-------------TCCAAGGATAC-----------------------------------GCTCTCAGCC--------------GCTCTC----T------------------------------CTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCT--------------TTGTGG------------------------------AAGT--GTCATTCCATTC-------CATGGACGAAA-CGAAA-----------ACGAAA--------TCGATGGCA--------ATGGCTGG----------TGAACAAAAGCGGAAATAT-GTGCATTTTTAAATTGT-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGCAGAAAAAAA--ATCGTACAATAAG----TGG-CAAGATCAG----------CGACATTAACGCACA
droSec2	scaffold_5:5416184-5416433 +		T--TTACATT-------------TCCAAGGATAC-----------------------------------GCTCTCAGCC--------------GCTCTC----T----------------------------CTCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCT--------------TTGTGG------------------------------AAGT--GTCATTCCATTC-------CATGGTCGAAA-CGAAA-----------ACGAAA--------TCGATGCCA--------ATGGCTGG----------TGAACAAAAGCGGAAATAT-GTGCATTTTTAAATTGT-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGCAGAAAA--A--ATCGTACAATAAG----TGG-CAAGATCAG----------CGACATTAACGCACA
dm3	chr3R:14484283-14484533 -		T--TTACATT-------------TCCAAGGATAC-----------------------------------GCTCTCAGCC--------------GCTCTC----T----------------------------CTCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCT--------------TTGTGG------------------------------AAGT--GTCATTCCATTC-------CATGGACGAAA-CGAAA-----------ACGAAA--------TCGATGGCA--------ATGGCTGG----------TGAACAAAAGCGGAAATAT-GTGCATTTTTAAATTGT-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAATC--------------------------------------------------------------------AGCAGAAAA-AA--ATCGTACAATAAG----TGG-CAAGATCAG----------CGACATTAACGCACA
droEre2	scaffold_4770:7148978-7149230 +		T--TTCCATT-------------TCCAAGGATAC-----------------------------------GCTCTCAGCCGCT----------CGCTCTC----TCT---------------------------CCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCT--------------TCGTGG------------------------------AAGT--GTCATTTCATTC-------CATGGATGAAA-CGAAA-----------ACGAAA--------TCGATGGCT--------ATGGCTGG----------TGAACAAAAGCGGAAATAT-GTGCATTTTTAAATAGT-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGCAGAAAA--A--ATCGTACAATAAG----TGG-CAAGATCAG----------CGACATTAAGGCA--
droYak3	3R:3130094-3130346 -		T--TTCCATT-------------TCCAAGGATAC-----------------------------------TCTCTCAGCC--------------GCTCGCTCTCACT---------------------------CCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCT--------------TCGTGG------------------------------AAGT--GTCATTCCATTC-------CATGGAGGAAA-CGAAA-----------ACGAAA--------TCGATGGCA--------ATGGCTGG----------CGAACAAAAGCGGAAATAT-GTGCATTTTTAAATTGT-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------ATCAGAAAA--A--AGCGTACAATAAG----TGG-CAAGATCAG----------CAACATTAACGTA--
droEug1	scf7180000409802:1545804-1546049 +		CGATTCCAAT-------------TTCAAGGATAC-----------------------------------TCTCCCAGCCGCTCTCA----CTCTCTCTC----TC--------------------------TTCCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCGCTGC--------------TCC--------------------------------------------------T-------CATGGACGAAA-CGAAA---------A-ATGAAA--------TCGATGGCA--------ATGGCTGG----------CGAACAAAAGCGGAAATAT-GTGCATTTTAAAATTGT-------------------------------------------GTCT--GCCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGTAA---AAAA--ATCGTACAATAAG----TGG-CAAGATCAG----------CGACATTAAAGCACA
droBia1	scf7180000299102:1460911-1461255 +		T--TTCCAAT-------------TCCAAGGATACGATACCCAGC-------------ATAGGGG-----CCACTCAGCCGCTCGCTCTCTCTCTCTCTC----GCTGTCTCTCCGTCTCTCACTCACGCTCTGCCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCC---------TCTCTTTTTGG------------------------------AAGT--GTCATTTCATTCCAGTCCCCATGGACGAAA-CGTAAACG-----AAATCGAAA--TCAAAATCGATGGCAAATGAAAAATAGCTGG----------CAAGCAAAAGCGGAAATAT-GTGCATTTTTAAATTGC-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AACAACAAAAAAGCATGGTACAATAAG----TGG-CAAGATCAG----------CGACATTGACGCACA
droTak1	scf7180000415878:329104-329388 +		T--TTCCGAT-------------TCCAAGGATACGATACCCAGC-------------ATAGGGG-C-GCTCTCT----------------CTCTCTCTC--------------------------------TTCCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCC---------TCTCTTTGTGG------------------------------AAGT--GTCATTCCGTTC-------CATGGACGAAA-CGAAA-----------TCGAAA--TCAAAATCGATGGCAAATG--AAATGGCTGG----------CGAACAAAAGCGGAAATAT-ATGCATTTTTAAACTGT-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGCAGAAAA--A--ATGGTACAATAAG----TGG-CAAGATCAG----------CGACATTAACGCACA
droEle1	scf7180000491008:1752603-1752846 +		A--CTC---T-------------TTCAAGGATAT-------------------------------C-CCTCTCTCAGTC--------------GCTCTC----TTTG------------------------TGCCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCT--------------T--TGG------------------------------AAGT--GTCATTCCATTCCATT--TCATGGACGAA------A-----------ACTTAA--------TCGATG------------------G----------CGAACAAAAGCGGAAATAT-GTGCATTTTTAAATTGT-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGGAAAAGGAAA--ATAGTACAATAAG----TGG-CAAGATCAG----------CGACATTAACGCGCA
droRho1	scf7180000768158:28410-28650 +		A--CTC---T-------------TCCAAGGATAT-------------------------------C-CCTCTCTCGGTC--------------GCTCTC----CT--------------------------TGCCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCT--------------T--TGG------------------------------AAGT--GTCATTCCATTCCATT--TCATGGACGAA------A-----------ACGAAA--------TCGATG------------------G----------CGAACAAAAGCGGAAATAT-GTGCATTTTTATATTGT-------------------------------------------GTGT--GTCCGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGGAAAA-GAAA--ATCGTAAAATAAG----TGG-CAAGATCAG----------CAACATTAACGCACA
droFic1	scf7180000453800:964724-964966 -		T--T-------------------TCCAAGGATAC-----CCA----------------T-----TC-TCTCTCTCGGT------------TTCGCTCTC--------------------------------TCCCTCGATCGATACTTG--GTAATTAGCTGGCG--TCCTCTCT--------------TT-TGG------------------------------AAGT--GTCATT-----C-------CATGGACGAA------A-----------ATGAAA--------TCGATGGCA--------ATGGCTGG----------CGAACAAAAGCGGAAATAT-GTGCATTTTTAAATTGT-------------------------------------------GTGT--CTCAGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGCAAAAAGAAA--ATCGTACAATAA-------G-CAAGATCAG----------CGACATTAACGCACA
droKik1	scf7180000302699:202314-202580 -		T--CTGCCTC-------------T-----------------------------------------G-TCTCTCTCT--------------CTCACTCTC----TT-C------------------------TCCCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCC--------------TCG-GG------------------------------AATT--GTGGTTC-GTTC-------CATGGACGAA-----------------------A--------TCGATTCCA--------ATGGGTGG----------CGAACAAAAGCGGAAATAT-GTGCATTTTTAATTCGC-------------------------------------------GTGTGCGTCTGTGTAATAATAAGCATAATAAGC---------------------ACAAACAGCAGTGAAAAGCGTT------------------AAAAAAAAGAAGAA-CAAA--ATCGGACAATAAG----TGG-CAAGATCAG----------CAACATTAACGCACA
droAna3	scaffold_13340:9632017-9632279 +		-------------------------------------------------------------------------------------------------------------------------------------------------------GCAATTACCTGGCG--TCCTCTCT---------TTCTCCTCTGGAAT---------------------------AATT--GTCATCCGCTTC-------CATGGACGAAATCGAAA-----------TCGAAA--------TCGAT-TCA--------ATGGCAG-CACAGCCCAGCGAACAAAAGCGGAATTAT-GTGCATTTTTAAATTGTGTCTACTTTCGGGGTATACCTCTCAGTGTGTGTGTGTTTGTGTGTGT--GCCTGT--AATTATGAGAAACGGAAA----------------------------------------------------------------AGAGAAGCAAAAAAAAA----AACACACTCTG----TGGCCAAGATCAC----------TGACATTAACATACA
droBip1	scf7180000396691:2334747-2335039 +		T--T-------------------TTCAAGGATACCAGCCACAGCCACAGTCAGCCAGATACGG-------------------------------------------------------------------------------------GCCGTAATTAGCTGGCG--TCCTCTCT---------TTCTCCTCTGGAAT---------------------------AATT--GTCGTCCACTTC-------CATGGACGAA------A-----------TCGAAA--------TCGAT-TCA--------ATGGCAGGCACAGT----CGAACAAAAGCGGAATTAT-GTGCATTTTTAAATTGTGTCTACTTTTGGGGTATTCCTCTGTGT----------------GTGTGTGCCTGT--AATTATGAGAACCAGAATG--------------------AAGCAACTGCGGTGATATG-----------------------------AACACAAAAAA-------------AAC--TCTGGCCAAGATCAC----------TGACATTACCATACA
dp5	2:11675742-11676099 +		T--TCT---C-------------TCCACA------------------------------------C---ACTCTCT--------------CTCTCTCTC----TCTG------------------------TGTTACGATCGATAT-AGCAGCAATTAGTTCTCG--TTTTC--GTAGTAGTT-TTTTCCTCTTGAGCAGTTCCTGGGTACATAACAGACCGTCCAATT--CCCATACCATTA-------GCTCGACAAAA-TCAATGCAACGAAAA-G-TGAACA--------G----------------AC-----ATCG-----TGGAATAAAGCGGAAATAT-GTAT-TTTCCAAATTGTGTCTACATTTGGTGCGTGCCTACGAGT----------------GTGT--GTGTGC--AATCATAATAAAAAAAA---------------------------AACGCAGTGAAACGCGTTCTGCGCGTGTGGAAAATTAAAGCAAAGCAAAAAAAAA------GACATTAAGCCACTGG-CAAGATCAC----------AGACA--GACGCATA
droPer2	scaffold_0:8837531-8837892 -		T--TCT---C-------------TCCACA------------------------------------C---ACTCTCT--------------CTCTCTCTC----TCTG------------------------TGTTACGATCGATAT-AGCAGCAATTAGTTCTCG--TTTTC--GTAGTAGTTTTTTTCCTCTTGAGTAGTTCCTGGGTACATAACAGACCGTCCAATT--CCCATACCATTA-------GCTCGACAAAA-TCAATGCAACGAAAA-G-TGAACA--------G----------------AC-----ATCG-----TGGAATAAAGCGGAAATAT-GTAT-TTTCCAAATTGTGTCTACATTTGGTGCGTGCCTACGAGT----------------GTGT--GTGTGC--AATCATAATAAAAAAAAA--------------------------AACGCAGTGAAACGCGTTCTGCGCGTGTGGAAAATTAAAGCAAAGCAAAAAAAAA------GACATTAAGCCACTGG-CAAGATCAC----------AGACAGACACATACA
droWil2	scf2_1100000004943:10508960-10509319 +		G--CCAAGACTCCAAGCGAAATGGAAAAACTTGC------------------------------TCTCTTCTCTCGCT--------------CACTCTC----TCTCACACACCAACACACACACACACAC-ACGACGATCGATTAGTG--CTCATTAAAGA-AACATTT--TCA--------------TCGTCA------------------------------AT-TTTGT-----CATTC-------CATGGACGAAA-TCAATTCA-----AA-G-TGAACAACAAA-ACGGAAACAAAAACGGAAAATCTCG----------TTCACAAAAGCGGAAATAAAATTAATTATTTTATTGT-------------------------------------------GTGT--GTCTGT--GTGTGTGTATATAGTGTGAAGAATATTGGAATTTGAATATAATTACTATATATATACA-----------------------------TATATATAA-AA------GCCAATAAGT--TAGGCCAAGATCACACACACATACTGAGAGAAACGTACG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

T--TTACATT-------------TCCAAGGATAC-----------------------------------GCTCTCAGCC--------------GCTCTC----T------------------------------CTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCT--------------TTGTGG------------------------------AAGT--GTCATTCCATTC-------CATGGACGAAA-CGAAA-----------ACGAAA--------TCGATGGCA--------ATGGCTGG----------TGAACAAAAGCGGAAATAT-GTGCATTTTTAAATTGT-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGCAGAAAAAAA--ATCGTACAATAAG----TGG-CAAGATCAG----------CGACATTAACGCACA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................................................................................................................................................................ATGGCTGG----------TGAACAAAAGCGG.............................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
........................................................................................................................................CGATCGATAC-TG--GTAATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TGAACAAAAGCGGAAATAT-G.....................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC--------------------------------------------------------------------AGCAGAAAAAAA--ATCGTA.................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TGGCTGG----------TGAACAAAAGCGGTT...........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................GGCA--------ATGGCTGG----------TGAACAAAAGCGGAAA..........................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................A-----------ACGAAA--------TCGATGGCA--------ATGG........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....TACATT-------------TCCAAGGATAC-----------------------------------GCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TC----T------------------------------CTCGATCGATAC-TG--GTAATTAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

T--TTACATT-------------TCCAAGGATAC-----------------------------------GCTCTCAGCC--------------GCTCTC----T----------------------------CTCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCT--------------TTGTGG------------------------------AAGT--GTCATTCCATTC-------CATGGTCGAAA-CGAAA-----------ACGAAA--------TCGATGCCA--------ATGGCTGG----------TGAACAAAAGCGGAAATAT-GTGCATTTTTAAATTGT-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGCAGAAAA--A--ATCGTACAATAAG----TGG-CAAGATCAG----------CGACATTAACGCACA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAAGC--------------------------------------------------------------------AGCAGAAAA--A--AT.....................................................	21	1	1.00	1	0	1	0	0
.............................................................................CC--------------GCTCTC----T----------------------------CTCTCGATCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................................................................................................CA--------ATGGCTGG----------TGAACAAAAG................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
................................................................................................................................................................TGGCG--TCCTCTCT--------------TTGTGG------------------------------AAG.............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1

dm3

T--TTACATT-------------TCCAAGGATAC-----------------------------------GCTCTCAGCC--------------GCTCTC----T----------------------------CTCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCT--------------TTGTGG------------------------------AAGT--GTCATTCCATTC-------CATGGACGAAA-CGAAA-----------ACGAAA--------TCGATGGCA--------ATGGCTGG----------TGAACAAAAGCGGAAATAT-GTGCATTTTTAAATTGT-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAATC--------------------------------------------------------------------AGCAGAAAA-AA--ATCGTACAATAAG----TGG-CAAGATCAG----------CGACATTAACGCACA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CAAGATCAG----------CGACATTAACG....	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................AATTAGCTGGCG--TCCTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TTTTAAATTGT-------------------------------------------GTGT--GTCTGT--............................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
T--TTACATT-------------TCCAAGGATAC-----------------------------------GC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TT-------------TCCAAGGATAC-----------------------------------GCTCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATAAG----TGG-CAAGATCAG----------C..............	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATAAG----TGG-CAAGATCAG----------...............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TTTAAATTGT-------------------------------------------GTGT--GTCT................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................C-----------------------------------GCTCTCAGCC--------------GCTCTC----T----------------------------CTCTCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................TAGCTGGCG--TCCTCTCT--------------TTGTGG------------------------------AAGT--G.........................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TCTCAGCC--------------GCTCTC----T----------------------------CTCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TAC-TG--GTAATTAGCTGGCG--TC........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TGT-------------------------------------------GTGT--GTCTGT--AATTATGTA...................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................ATAT-GTGCATTTTTAAAA........................................................................................................................................................................................................................	18	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TCAGCC--------------GCTCTC----T----------------------------CTCTCCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

T--TTCCATT-------------TCCAAGGATAC-----------------------------------GCTCTCAGCCGCT----------CGCTCTC----TCT---------------------------CCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCT--------------TCGTGG------------------------------AAGT--GTCATTTCATTC-------CATGGATGAAA-CGAAA-----------ACGAAA--------TCGATGGCT--------ATGGCTGG----------TGAACAAAAGCGGAAATAT-GTGCATTTTTAAATAGT-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGCAGAAAA--A--ATCGTACAATAAG----TGG-CAAGATCAG----------CGACATTAAGGCA--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................TTTAAATAGT-------------------------------------------GTGT--GTCTGT--AAT.........................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................AACAAAAGCGGAAATAT-GTGCATTTT.............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0

droYak3

T--TTCCATT-------------TCCAAGGATAC-----------------------------------TCTCTCAGCC--------------GCTCGCTCTCACT---------------------------CCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCT--------------TCGTGG------------------------------AAGT--GTCATTCCATTC-------CATGGAGGAAA-CGAAA-----------ACGAAA--------TCGATGGCA--------ATGGCTGG----------CGAACAAAAGCGGAAATAT-GTGCATTTTTAAATTGT-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------ATCAGAAAA--A--AGCGTACAATAAG----TGG-CAAGATCAG----------CAACATTAACGTA--	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................CATTC-------CATGGAGGAAA-CGAAA-----------ACGAA......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................GATAC-----------------------------------TCTCTCAGCC--------------GCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

CGATTCCAAT-------------TTCAAGGATAC-----------------------------------TCTCCCAGCCGCTCTCA----CTCTCTCTC----TC--------------------------TTCCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCGCTGC--------------TCC--------------------------------------------------T-------CATGGACGAAA-CGAAA---------A-ATGAAA--------TCGATGGCA--------ATGGCTGG----------CGAACAAAAGCGGAAATAT-GTGCATTTTAAAATTGT-------------------------------------------GTCT--GCCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGTAA---AAAA--ATCGTACAATAAG----TGG-CAAGATCAG----------CGACATTAAAGCACA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T--TTCCAAT-------------TCCAAGGATACGATACCCAGC-------------ATAGGGG-----CCACTCAGCCGCTCGCTCTCTCTCTCTCTC----GCTGTCTCTCCGTCTCTCACTCACGCTCTGCCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCC---------TCTCTTTTTGG------------------------------AAGT--GTCATTTCATTCCAGTCCCCATGGACGAAA-CGTAAACG-----AAATCGAAA--TCAAAATCGATGGCAAATGAAAAATAGCTGG----------CAAGCAAAAGCGGAAATAT-GTGCATTTTTAAATTGC-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AACAACAAAAAAGCATGGTACAATAAG----TGG-CAAGATCAG----------CGACATTGACGCACA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

T--TTCCGAT-------------TCCAAGGATACGATACCCAGC-------------ATAGGGG-C-GCTCTCT----------------CTCTCTCTC--------------------------------TTCCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCC---------TCTCTTTGTGG------------------------------AAGT--GTCATTCCGTTC-------CATGGACGAAA-CGAAA-----------TCGAAA--TCAAAATCGATGGCAAATG--AAATGGCTGG----------CGAACAAAAGCGGAAATAT-ATGCATTTTTAAACTGT-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGCAGAAAA--A--ATGGTACAATAAG----TGG-CAAGATCAG----------CGACATTAACGCACA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A--CTC---T-------------TTCAAGGATAT-------------------------------C-CCTCTCTCAGTC--------------GCTCTC----TTTG------------------------TGCCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCT--------------T--TGG------------------------------AAGT--GTCATTCCATTCCATT--TCATGGACGAA------A-----------ACTTAA--------TCGATG------------------G----------CGAACAAAAGCGGAAATAT-GTGCATTTTTAAATTGT-------------------------------------------GTGT--GTCTGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGGAAAAGGAAA--ATAGTACAATAAG----TGG-CAAGATCAG----------CGACATTAACGCGCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A--CTC---T-------------TCCAAGGATAT-------------------------------C-CCTCTCTCGGTC--------------GCTCTC----CT--------------------------TGCCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCT--------------T--TGG------------------------------AAGT--GTCATTCCATTCCATT--TCATGGACGAA------A-----------ACGAAA--------TCGATG------------------G----------CGAACAAAAGCGGAAATAT-GTGCATTTTTATATTGT-------------------------------------------GTGT--GTCCGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGGAAAA-GAAA--ATCGTAAAATAAG----TGG-CAAGATCAG----------CAACATTAACGCACA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

T--T-------------------TCCAAGGATAC-----CCA----------------T-----TC-TCTCTCTCGGT------------TTCGCTCTC--------------------------------TCCCTCGATCGATACTTG--GTAATTAGCTGGCG--TCCTCTCT--------------TT-TGG------------------------------AAGT--GTCATT-----C-------CATGGACGAA------A-----------ATGAAA--------TCGATGGCA--------ATGGCTGG----------CGAACAAAAGCGGAAATAT-GTGCATTTTTAAATTGT-------------------------------------------GTGT--CTCAGT--AATTATGTGAATAATAAGC--------------------------------------------------------------------AGCAAAAAGAAA--ATCGTACAATAA-------G-CAAGATCAG----------CGACATTAACGCACA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

T--CTGCCTC-------------T-----------------------------------------G-TCTCTCTCT--------------CTCACTCTC----TT-C------------------------TCCCTCGATCGATAC-TG--GTAATTAGCTGGCG--TCCTCTCC--------------TCG-GG------------------------------AATT--GTGGTTC-GTTC-------CATGGACGAA-----------------------A--------TCGATTCCA--------ATGGGTGG----------CGAACAAAAGCGGAAATAT-GTGCATTTTTAATTCGC-------------------------------------------GTGTGCGTCTGTGTAATAATAAGCATAATAAGC---------------------ACAAACAGCAGTGAAAAGCGTT------------------AAAAAAAAGAAGAA-CAAA--ATCGGACAATAAG----TGG-CAAGATCAG----------CAACATTAACGCACA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

-------------------------------------------------------------------------------------------------------------------------------------------------------GCAATTACCTGGCG--TCCTCTCT---------TTCTCCTCTGGAAT---------------------------AATT--GTCATCCGCTTC-------CATGGACGAAATCGAAA-----------TCGAAA--------TCGAT-TCA--------ATGGCAG-CACAGCCCAGCGAACAAAAGCGGAATTAT-GTGCATTTTTAAATTGTGTCTACTTTCGGGGTATACCTCTCAGTGTGTGTGTGTTTGTGTGTGT--GCCTGT--AATTATGAGAAACGGAAA----------------------------------------------------------------AGAGAAGCAAAAAAAAA----AACACACTCTG----TGGCCAAGATCAC----------TGACATTAACATACA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................AATCGAAA-----------TCGAAA--------TCGAT-TCA--------ATGGC.......................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAGAAACGGAAA----------------------------------------------------------------AGA.......................................................................	20	1	1.00	1	0	0	0	0	1	0

droBip1

T--T-------------------TTCAAGGATACCAGCCACAGCCACAGTCAGCCAGATACGG-------------------------------------------------------------------------------------GCCGTAATTAGCTGGCG--TCCTCTCT---------TTCTCCTCTGGAAT---------------------------AATT--GTCGTCCACTTC-------CATGGACGAA------A-----------TCGAAA--------TCGAT-TCA--------ATGGCAGGCACAGT----CGAACAAAAGCGGAATTAT-GTGCATTTTTAAATTGTGTCTACTTTTGGGGTATTCCTCTGTGT----------------GTGTGTGCCTGT--AATTATGAGAACCAGAATG--------------------AAGCAACTGCGGTGATATG-----------------------------AACACAAAAAA-------------AAC--TCTGGCCAAGATCAC----------TGACATTACCATACA	Size	Hit Count	Total Norm	Total
No Reads

dp5

T--TCT---C-------------TCCACA------------------------------------C---ACTCTCT--------------CTCTCTCTC----TCTG------------------------TGTTACGATCGATAT-AGCAGCAATTAGTTCTCG--TTTTC--GTAGTAGTT-TTTTCCTCTTGAGCAGTTCCTGGGTACATAACAGACCGTCCAATT--CCCATACCATTA-------GCTCGACAAAA-TCAATGCAACGAAAA-G-TGAACA--------G----------------AC-----ATCG-----TGGAATAAAGCGGAAATAT-GTAT-TTTCCAAATTGTGTCTACATTTGGTGCGTGCCTACGAGT----------------GTGT--GTGTGC--AATCATAATAAAAAAAA---------------------------AACGCAGTGAAACGCGTTCTGCGCGTGTGGAAAATTAAAGCAAAGCAAAAAAAAA------GACATTAAGCCACTGG-CAAGATCAC----------AGACA--GACGCATA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................................................................TCTTGAGCAGTTCCTGGGTACA.............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................GTAGTT-TTTTCCTCTTGAGC...........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................A--------G----------------AC-----ATCG-----TGGAATAAAGC...............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.........................CACA------------------------------------C---ACTCTCT--------------CTCTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

T--TCT---C-------------TCCACA------------------------------------C---ACTCTCT--------------CTCTCTCTC----TCTG------------------------TGTTACGATCGATAT-AGCAGCAATTAGTTCTCG--TTTTC--GTAGTAGTTTTTTTCCTCTTGAGTAGTTCCTGGGTACATAACAGACCGTCCAATT--CCCATACCATTA-------GCTCGACAAAA-TCAATGCAACGAAAA-G-TGAACA--------G----------------AC-----ATCG-----TGGAATAAAGCGGAAATAT-GTAT-TTTCCAAATTGTGTCTACATTTGGTGCGTGCCTACGAGT----------------GTGT--GTGTGC--AATCATAATAAAAAAAAA--------------------------AACGCAGTGAAACGCGTTCTGCGCGTGTGGAAAATTAAAGCAAAGCAAAAAAAAA------GACATTAAGCCACTGG-CAAGATCAC----------AGACAGACACATACA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGCGCGTGTGGAAA...............................................................................	18	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CCTACGAGT----------------GTGT--GTGTGC--AA..........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droWil2

G--CCAAGACTCCAAGCGAAATGGAAAAACTTGC------------------------------TCTCTTCTCTCGCT--------------CACTCTC----TCTCACACACCAACACACACACACACAC-ACGACGATCGATTAGTG--CTCATTAAAGA-AACATTT--TCA--------------TCGTCA------------------------------AT-TTTGT-----CATTC-------CATGGACGAAA-TCAATTCA-----AA-G-TGAACAACAAA-ACGGAAACAAAAACGGAAAATCTCG----------TTCACAAAAGCGGAAATAAAATTAATTATTTTATTGT-------------------------------------------GTGT--GTCTGT--GTGTGTGTATATAGTGTGAAGAATATTGGAATTTGAATATAATTACTATATATATACA-----------------------------TATATATAA-AA------GCCAATAAGT--TAGGCCAAGATCACACACACATACTGAGAGAAACGTACG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................................................GGAAACAAAAACGGAAAATCTCG----------TT........................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAATATTGGAATTTGAAT......................................................................................................................	23	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATAGTGTGAAGAATAT..................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................CATTT--TCA--------------TCGTCA------------------------------AT-TTTGT-----C..................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................GAACAACAAA-ACGGAAACA....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
........................................................................................................CTCACACACCAACACACACAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGT--TAGGCCAAGATCACACACAC...................	26	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACACATACTGAGAGAAAC.....	23	2	0.50	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................TTGT-------------------------------------------GTGT--GTCTGT--GTGTG.......................................................................................................................................................	19	20	0.05	1	0	1	0	0	0

dsi_7188

3r:6772933-6773082 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.3	-26.3	-26.2