ID:

dsi_7179

 Coordinate:

3r:10744190-10744339 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.6 -33.4 -33.2

Flybase annnotation

Antisense to intron [3r_10742713_10749585_+]

No Repeatable elements found

Sense Strand Reads

TGACAGTAGTCAGGAGGATCCAACTGGAGGATTGGCAACAGCCCATCCAGAACTGGATAGCACTGTAATAAAAGTGAAGGTGCGAGTGCTGGATATCAACGATAATCCACCGCGATTCCGTTCTAAAATCTTTACTGGTGGTATAACGACCAATGCTGATTTCGGTTTAAAATTCATGCGAGTGGAGGCTACGGACGCAGATGAAGGAGAAAATGGAAGGATTGGATACTATCAAGTGGGTGAAATCCGT
**************************************************((((((((((((...........((((((((...((.((.(((.(((..((.........)).)))))))).))...))))))))((((.((...)).)))).)))))..))))))).........((((.((((...))))...)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR902009
testis
 SRR902008
ovaries
 M024
male body		 M053
female body
 SRR1275485
Male prepupae
..........................................................................................................................................................................................GGCTACGGACGTAGA................................................. 15 1 2 3.00 6 6 0 0 0 0 0 0 0 0 0 0
TGACAGTAGTCAGGAGGATCCAAG.................................................................................................................................................................................................................................. 24 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................TGATTTCGGTTTAAAATTCATGCGAGT................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ACGGACGCAGATGAAGGAC......................................... 19 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........................TGGAGGATTGGGAACAGCCCATCCGGAAC..................................................................................................................................................................................................... 29 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................TCCAGAACTGGACAGCACTGTAAT..................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................TGAAGGAGCGAGAGCTGGAAATC......................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................GCACTGTAATGGAAGTGAAGG.......................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................AACGACCCATGTTGTTTTCGGT.................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............AGGATCCAACTGGAGGATTG........................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAGGAGAAACTGGAAACATTGG......................... 22 3 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................................CAACCGCGATTCCGTT................................................................................................................................ 16 1 3 0.67 2 0 0 1 0 1 0 0 0 0 0 0
.........................................................................................................TCAACCGAGATTCCGTT................................................................................................................................ 17 2 6 0.50 3 0 0 0 0 3 0 0 0 0 0 0
.AACGGTAGTCAGGAGGAT....................................................................................................................................................................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TCAACCAGTGCTGATTTCGG..................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................TGTAATGGGAGTGAAGGTGCG...................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGGATTGGATACCATCAAG.............. 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGAGAATGGAAGGATTATATA...................... 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................TAATCCCCCGCGATT..................................................................................................................................... 15 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................CATCAACCGAGATTCCGTT................................................................................................................................ 19 3 10 0.20 2 0 0 0 0 2 0 0 0 0 0 0
.........................................................................................................TCTACCGAGATTCCGTT................................................................................................................................ 17 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
....................................AACAGCCGACTCAGAACTG................................................................................................................................................................................................... 19 3 20 0.20 4 0 0 0 0 0 0 0 0 3 1 0
.........................................................................................................................................................................................GGGCTACGGACGTAGA................................................. 16 2 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0
.....................................ACAGGCCATCCAGAA...................................................................................................................................................................................................... 15 1 14 0.14 2 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AACAGATGAAGAAGAAAATGGA................................. 22 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
................................................................GTAATGAAAGTGAAGG.......................................................................................................................................................................... 16 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAGAAGAAATTGGAAGGAGTG.......................... 21 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................CTGAGTTCGGTTTAATA.............................................................................. 17 2 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGGATTGGATACTTTCAA............... 18 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CAATGTTCATTTCGGTTTA................................................................................. 19 2 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................GATGTAGAAAATGGATGGAT............................ 20 3 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................GTAACGATCAAGTGGGTGA....... 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................AGCAACCGCGATTCCGTTA............................................................................................................................... 19 3 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................AATCAACCGAGATTCCGTA................................................................................................................................ 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
................................................................GTAATGAAAGTGAACGT......................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................GACCGATGCGGATTTCGGC.................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................CGTAATGAAAGTGAAGG.......................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACTGTCATCAGTCCTCCTAGGTTGACCTCCTAACCGTTGTCGGGTAGGTCTTGACCTATCGTGACATTATTTTCACTTCCACGCTCACGACCTATAGTTGCTATTAGGTGGCGCTAAGGCAAGATTTTAGAAATGACCACCATATTGCTGGTTACGACTAAAGCCAAATTTTAAGTACGCTCACCTCCGATGCCTGCGTCTACTTCCTCTTTTACCTTCCTAACCTATGATAGTTCACCCACTTTAGGCA
**************************************************((((((((((((...........((((((((...((.((.(((.(((..((.........)).)))))))).))...))))))))((((.((...)).)))).)))))..))))))).........((((.((((...))))...)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
..................................................................................................................................................................GCCAGATTGTAAGTACGCGCA................................................................... 21 3 2 0.50 1 1 0 0 0
...................................................................................................................................................................CCAGATTGTAAGTACGCGC.................................................................... 19 3 7 0.14 1 0 1 0 0
........CAGTGCTCCTAGGTTAA................................................................................................................................................................................................................................. 17 2 8 0.13 1 0 0 1 0
.............................................AGGTCTTGTCCTCTCGT............................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 10:48 AM