ID:

dsi_7178

 Coordinate:

2r:2457475-2457624 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.8 -10.8 -10.4

Flybase annnotation

exon [2r_2457282_2457474_+]; CDS [2r_2457282_2457474_+]; intron [2r_2457475_2458734_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTAGGAATTTCGCTGATTTCTCTTGGAGGTTTCTATGTGCTTGTATCAAGGTAAGGTGGCACTTCAATTTGACTGCTGTCCAAATTACAATACTGGTTTTCCAAGTTTTACTTTATCTACCTTACACGGAGAGCAAAAGGGGATATCTAAAAGACTAAAGGAAGCGTTTTTTATACGTTATTCAGGCACCTACAATAAACTGAAAAACAAGAGAGAATGCTAAAATCCAAGCTTTTTGGCAGATCGATAG
*********************************************************.....(((..(((...((((.(((.............(((.....((((...)))).....)))......))).)))))))..))).********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 M024
male body		 O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR902009
testis
 SRR902008
ovaries
.........................................................GGCACTTCAATTTGACTG............................................................................................................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGCTAAAATCCAAGCTTTTTGGCAGA....... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........TCGCTGATTTCTCTTGGAGGTTTC......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................TGGAGGTTTCTATGTGCTTGTATCAAG........................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....AATTTCGCTGATTTCTCTTGGA............................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................GCTTGTATCAAGGTAAGGT................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AAACTGAAAAACAAGAGAGAATGC.............................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................GTGCTTGTATCAAGGTAAGGTGGC.............................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................GAAGCGTTTCATATACGTT....................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGGAGAGCAAAAGGGGAT.......................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TAAAATCCAAGCTTTTTGGCAGA....... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TTGACTACTGTCCAAATTACGCT............................................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................ATACACGGAGAGCGAAAGGG............................................................................................................. 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................TTTTTCTACCTTAAAGGGAGA...................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................AAAACAAGAGAGAATGC.............................. 17 0 20 0.45 9 9 0 0 0 0 0 0 0 0 0 0 0 0
GTAGGAATTTGGCTGGTTT....................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................CACGTAGAGCAAAAGGG............................................................................................................. 17 1 19 0.21 4 0 0 0 0 0 0 0 0 4 0 0 0 0
............................................................................................................................CACGTAGAGCAAAAG............................................................................................................... 15 1 20 0.20 4 0 0 0 0 0 0 0 0 4 0 0 0 0
............................................................................................................................CACGTAGAGCAAAAGG.............................................................................................................. 16 1 20 0.20 4 0 0 0 0 0 0 0 0 4 0 0 0 0
............................................................................................................................................................................................................AAACGAGAGAGGATGCTCAAA......................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GATACGTCAGTCAGGCACC............................................................ 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAACAAGAGAGAATGC.............................. 16 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGAGCAAAAGGGGAAAT........................................................................................................ 17 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ATGCTGAAATCCAAG................... 15 1 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................AAAAACAACAGAGAGTTCTAA........................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................CTTGTTGCCAGATCGTTAG 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CGCGGTGAGCAAAAGGG............................................................................................................. 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CATCCTTAAAGCGACTAAAGAGAACCTCCAAAGATACACGAACATAGTTCCATTCCACCGTGAAGTTAAACTGACGACAGGTTTAATGTTATGACCAAAAGGTTCAAAATGAAATAGATGGAATGTGCCTCTCGTTTTCCCCTATAGATTTTCTGATTTCCTTCGCAAAAAATATGCAATAAGTCCGTGGATGTTATTTGACTTTTTGTTCTCTCTTACGATTTTAGGTTCGAAAAACCGTCTAGCTATC
**********************************************************************************************************.....(((..(((...((((.(((.............(((.....((((...)))).....)))......))).)))))))..))).********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 O002
Head
............................................................................................................................................................................................GGATGTTATTTGACTTTTTGTTCT...................................... 24 0 1 3.00 3 3 0 0 0 0 0 0
......................................................................................................................................................................................................................CTTACGATTTTAGGTTCGAAAAACCGT......... 27 0 1 2.00 2 0 0 0 0 0 2 0
..........................................................................................................................ATGTGCCTCTCGTTTTCCCCTATAGAT..................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TTACGATTTTAGGTTCGAAAAACCGT......... 26 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................GAAGTTAAACTGGCGACAGGTT....................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................AAGTCCGTGGATGTTATTTGACTTTT............................................ 26 0 1 1.00 1 0 0 0 1 0 0 0
..............................................................................................................................................................................................ATGTTATTTGACTTTTTGTTCTCTC................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................TCCGTGGATGTTATTTGAC................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1
.......................................................................................................TCAAAATGAAATAGATGGAATGTG........................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................ATTTGACTTTTTGTTCTCT.................................... 19 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................................................................................................AATAAGTCCGTGGATGTTATTTGACTT.............................................. 27 0 1 1.00 1 0 0 0 0 1 0 0
....................................................................................................................................................................................AAGTCCGTGGATGTTATTTGACTTT............................................. 25 0 1 1.00 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................TTACGTTCGAAAAACCGTCTAGCTAT. 26 1 1 1.00 1 0 0 0 1 0 0 0
..............................................................................................................................................................................................................TGTTCTCTCTTACGATTTTAGGTT.................... 24 0 1 1.00 1 1 0 0 0 0 0 0
.................AAGAGAACCTCCAAAGATACACGAACAT............................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 1 0 0
............................................................................................................ATGAAATAGATGGAATGTGCCTCTCGT................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................................................................................................ATGCAATAAGTCCGTGGATGTTATT.................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0
................................................................................................................................................................................................................................TAGGTTCGAAAAACCGTCTAGCTAT. 25 0 1 1.00 1 0 0 1 0 0 0 0
..............................................................................AGGTTTAATGTTATGACCAAAAGGTT.................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................AGATTTTCTGATTTCCTTCGCAAAAAAT............................................................................. 28 0 1 1.00 1 0 0 0 0 1 0 0
..............................................................AAGTTAAACTGACGACAGGTTTAAT................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................GAAGTTAAACTGACGACAGGTTT...................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................GGTTCAAAATGAAATAGATGG................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................GAAATAGATGGAATGTGCCTC....................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................GTTCAAAATGAAATAGATGGAATGTGC.......................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0
....................................................................................................................GATGGAATGTGCCTCTCGTTTTCCC............................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................GAAGTTAAACTGACGACAGGTTTAATGT................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................CGACAGGTTTAATGTTATGACCAAAAGGTT.................................................................................................................................................. 30 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................TGGATGTTATTTGACTT.............................................. 17 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................CGCAAAAAATATGCAATAAGTCCGT.............................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................ACGATTTTAGGTTCGAAAAACCGTCT....... 26 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................CAGGTTTAATGTTATGACCAAAAGGT................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0
.............................................................................................................................................................................................................TTGTTCTCTCTTACGATTTTAGGTT.................... 25 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................TTTGTTCTCTCTTACGATTTTAGGTT.................... 26 0 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................GAAATAGATGGAATGTGCCTCCCGT................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................ATCGATTTTCTGATT............................................................................................ 15 1 9 0.22 2 0 2 0 0 0 0 0
..............................................................................................................................................................................AGCAATAAGTCCGTCGAT.......................................................... 18 2 6 0.17 1 0 0 0 1 0 0 0
..................................................................................................................TAGGGGGAATGTGCCTC....................................................................................................................... 17 2 11 0.09 1 0 1 0 0 0 0 0
..............................................................................................................................................TATCGATTTTCTGAT............................................................................................. 15 1 15 0.07 1 0 1 0 0 0 0 0
...........................................................................GAGAGGTTTAATGTT................................................................................................................................................................ 15 1 16 0.06 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................TTTGTTCTCTCTTACGAT............................ 18 0 20 0.05 1 0 1 0 0 0 0 0
...........................................................................................TGATCAGAAGGTTCAAA.............................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:2457425-2457674 + dsi_7178 GTAGGAATTTCGCTGATTTCTCTTGGAGG---TTTCT----------------A--------------------------------------------------TGTGCTTGTATCAAGGTAAGGTGGCACTTCA----ATTTGACTGCTGTCCAAATTACAATACTG-------GTTTTCCAAGTTTTACTTTATCTACCTTACACGGAGAGCAAAAGGGGATAT-------------------CTAAAAGACTAAAGGAAGCGTTT-TTTATACGTTATTC--------------------------------------------------------------------------------------------AGGCACCTACAATAAACTGAAAAACA-------------AGAGAGAATGCTAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAGCTTTTTGGCAGATCG----ATAG
droSec2 scaffold_26:127325-127569 + GTAGGAATTTCGCTGATTTCTCTTGGCGG---TTTCT----------------A--------------------------------------------------TGTGCTTGTATCAAGGTAAGGCGGCACTACA----ATTTGACTGCTGTCCAAATTACAATACTG-------GTTTTCCAAGCTTTACTTTATCTACCTT------AGAGCAAAAGGGGATAT-------------------CTAAAAGACTAAAGGAAGCGTTTTTTTATACGTTATTC--------------------------------------------------------------------------------------------AGGCACCTACAATAAACTGAAAAACA-------------AGAGAGAATGCTAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGCTTTTTGGCAGATCG----ATAG
dm3 chr2R:1497712-1497951 + GTAGGAATTTCACTGATTTCTCTTGCCGG---TTTCT----------------A--------------------------------------------------TGTGCTTGTATCAAGGTAAGGTGGTACTACA----ATTAGACTGCTGTCCAAATTACAATACTG-------TGTTTCCGAGTTGTACT---------TTACACGTAGAGCAAAAGGTTATAT-------------------CTAACAGACTAATGGAAGCATTCT-----------------------C--------------------------------------------GTTTGCACTTCTGTCTATCATTTTGTTCGGTTCAGTTCAG--ACTTACAATAAACTGAAAAACA-------------AGAGAGAG--CTATAGT----------------------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4512:676440-676669 + TTCTTTTGTAA-----------------ATAATTTAA---TTGCA----------------------------------------------------------------TCACAAAAAGGTTG--GGGAATTCCT----AT--------TAAACCAACTTTAATACGG-------CCTTTACGAATCTTGCTTACT--CAGTTAGTGGAAGTGCAAACGAGAAA-T-------------------TTAAAAATTTTCTGGA----------------ATATCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTAGAAACTGGGGAAAAAATATTAAAATGAAGAGAAACTTAAAAAATTGGAGTGGGCGTGGCAAA-----AAGTTTTTTTTGGCAAATTT----GTAG
droYak3 v2_chr2L_random_001:394177-394405 + GTAGGAATTTCATTGATTTCTCTTGGCGG---TTTCT----------------A--------------------------------------------------TATGCTTGTATCAAGGTAAGGTAATACAATA----ATTTTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAACA-------------AGAGAGAACGCTATAGTCGAGTTCCTCGACTATCTGATACCCGTTACTCAGCTAGTAAAAGTGCGAAGGAGAGTCTTCAACGCCGAAAGT---TTTTGGAGGTTTGTGGGCG------------------------------------------TT--AGTGGGCGTGGCAAA-------AAGTTTTTTGGCAAGTTG----ATAG
droEug1 scf7180000409859:63888-64074 - CTAGCTTTCCGCATTCTCT--CCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTTATACCCGTTACTCGGAGAGTAAAAGGGTATATTAGATTCGTTGAAAAGTATGTAACAGGTAGAAGGAAGCGTTTC-----------------------CGACCCTATAAAGTATATATAATGAACAACGAGTACGATTGAGCCATGTCCGTC------TGTCTGTCTGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAACT--------TA-----------------AATCGCTG
droBia1 scf7180000301645:11902-12060 + TCTGACTGAAATCA--------------T---TATACCATCTGCAAGGGTTTAA--------------------------------------------------CAAGCGTTACCCACCTTAAG-------------------------------------------------------------------------------------GGAGCAAAAGGA-------------------------------------------------------------------TAATGAAT--------------------------------------------------------------------------------------------ATATATAAGCAGCAAAGGGATATTTTAGGGCGCCACCTACAGG----------------------------------------------------------------------C-TATT------------T-------------------------------------------------C--------ATTAGAT--GTTATTCAAGCGTTTTGGC----CG----ATAG
droTak1 scf7180000414945:18922-19090 - TCAACTTACAG----------------------------------------------------------------------------------------------------------------------------------------ACCGTCCAACCTACAGACTTCTCCCCTATAAATGCAGGTTTTTTTTTATACCCGTTAGTCGTAGAGTAAAAGGGTATATTGTATTTGTGCAAAAGTATGTAACAGCTAGAAAGAAGCGTTTC-----------------------TGACCCCATAAAGTATATAT---------------------------------------------------------------GGGCACTTCCACCAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490735:22631-22703 - GTTC-------------------------------CT----------------A--------------------------------------------------TGTGCTTGCTCCAAGGCAATGTAATACTGAATGTAATTTC--------CAAGTATA---------------------------------------------------------------------------------------------------------------------------CT------------------------------------------------------------------------------------------GCGTGT-------------------------------------------------------------TCTACGTAT--------------------------------------------------T----------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777442:203-336 - CAAATTTTTTTTTCA-GTTTTTCAAATAC---TATAG----------------T--------------------------------------------------TATTTTGCTAGCTAAGTAAGAACA---------------------------------------------------------------------------------------------AATAT-------------------------------------------AATTATTAAAACACATGTATATTAAAT--------------------------------------------------------------------------------------------TTAATAAAGGAATAAAAATAAAAACAAGAGAGAACGCTATAGT----------------------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453504:10252-10349 + GTAGGAATTTCTATTATTTCTCTTGGAGG---TTTTT----------------A--------------------------------------------------TGTACTTGTATATAGGTATGGTATTTTTATTAATAATATT--------AAAAATTATAACATTT-------TTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302277:1131364-1131458 + TATATAATATTTAAA-----------AAT---CTAAA----------------ATACAAATAAAAACAAGAAAGAAAGCTAACTTTGGTCAGTCAAAGTTTGTATACCCTTGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----------------AACAATTA
droAna3 scaffold_13230:1739343-1739423 - ATATTTAAAAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAAAAAAAATGTGTAT-------------------------------------------TTTATAAGTGAATT--------------------------------------------------------------------------------------------ATGAGGCTACAGAAAGAAGAAAAACA-------------AGAAAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395932:2364-2439 - AAAAAATAAAGGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAT-TTTATTTAAAATGT--------------------------------------------------------------------------------------------AAAAAACTAAAATAAAATAAAGAAAA-------------CATAATAATAA----------------------TAAA--------------------------------------------------A----------------------------------------------------------------------------------------------------------------------
dp5 4_group4:6561357-6561445 + GTGGTCATCTCTTTAATTTCGCTTGGAGG---CTTCT----------------A--------------------------------------------------TTTACTGGTGTCCAGGTAAGGCGGTAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGCTCATTTGCATT--------------------------------------------------------------------------------------------------TGCCTGC--------------------------------------------------T----------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_16:295511-295599 - GTGGGCATCTCTTTAATTTCGCTTGGAGG---CTTCT----------------A--------------------------------------------------TTTACTGGTGTCCAGGTAAGGCGGTAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGCTCATTTGCATT--------------------------------------------------------------------------------------------------TGCCTGC--------------------------------------------------T----------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:2984762-2984827 + CAAGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTTTTCAGCTATACACTGAGAGAAAAACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGCAATACA-------------GGAGAAAAAAGTAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12855:4298932-4299035 + AAAGGGCTAAGGTTAAGCA--CTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT------------------------------------------------------------------------------TTTATACGCCATGC--------------------------------------------------------------------------------------------AAAAACCGAACAAAAAACAAAAAATA-------------AGTAAGGATGCTTTAGTCGAACATCTCTGCTAGCAGA--------------------------------------------------T----------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:16154620-16154672 + GTGGGCATTTCGCTGCTCTCTCTAGGTGG---CTTCT----------------A--------------------------------------------------CGTGCTCGTCTCCAGGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:17184621-17184677 - TTAAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTAAACTAAACTGAAAAGCA-------------TGAAATAAAGATTTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAGCTTTTT-----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTAGGAATTTCGCTGATTTCTCTTGGAGG---TTTCT----------------A--------------------------------------------------TGTGCTTGTATCAAGGTAAGGTGGCACTTCA----ATTTGACTGCTGTCCAAATTACAATACTG-------GTTTTCCAAGTTTTACTTTATCTACCTTACACGGAGAGCAAAAGGGGATAT-------------------CTAAAAGACTAAAGGAAGCGTTT-TTTATACGTTATTC--------------------------------------------------------------------------------------------AGGCACCTACAATAAACTGAAAAACA-------------AGAGAGAATGCTAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAGCTTTTTGGCAGATCG----ATAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................GGCACTTCA----ATTTGACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAGCTTTTTGGCAGA...........2611.00100000000010000000
.........TCGCTGATTTCTCTTGGAGG---TTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
.......................TGGAGG---TTTCT----------------A--------------------------------------------------TGTGCTTGTATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
.....AATTTCGCTGATTTCTCTTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
...........................................................................................................GCTTGTATCAAGGTAAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAAAACA-------------AGAGAGAATGC...................................................................................................................................................................................................2411.00100000000001000000
.........................................................................................................GTGCTTGTATCAAGGTAAGGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100001000000000000
..............................................................................................................................................................................................................CGGAGAGCAAAAGGGGAT............................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAGCTTTTTGGCAGA...........2311.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AAAACA-------------AGAGAGAATGC...................................................................................................................................................................................................17200.45900000000009000000
............................................................................................................................................................................................................................................................................................................................................................................................................AAACA-------------AGAGAGAATGC...................................................................................................................................................................................................16200.10200000000002000000
droSec2
GTAGGAATTTCGCTGATTTCTCTTGGCGG---TTTCT----------------A--------------------------------------------------TGTGCTTGTATCAAGGTAAGGCGGCACTACA----ATTTGACTGCTGTCCAAATTACAATACTG-------GTTTTCCAAGCTTTACTTTATCTACCTT------AGAGCAAAAGGGGATAT-------------------CTAAAAGACTAAAGGAAGCGTTTTTTTATACGTTATTC--------------------------------------------------------------------------------------------AGGCACCTACAATAAACTGAAAAACA-------------AGAGAGAATGCTAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGCTTTTTGGCAGATCG----ATAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................TTGGCGG---TTTCT----------------A--------------------------------------------------TGTGCTTGTATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................ATAAACTGAAAAACA-------------AGAGAGAATGC...................................................................................................................................................................................................2611.0010010
..............................................................................................................TGTATCAAGGTAAGGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
..................................................................................................................................................................................................................................................................................................................................................................................................ATAAACTGAAAAACA-------------AGAGAGAATG....................................................................................................................................................................................................2511.0011000
...........................................................................................................GCTTGTATCAAGGTAAGGCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
dm3
GTAGGAATTTCACTGATTTCTCTTGCCGG---TTTCT----------------A--------------------------------------------------TGTGCTTGTATCAAGGTAAGGTGGTACTACA----ATTAGACTGCTGTCCAAATTACAATACTG-------TGTTTCCGAGTTGTACT---------TTACACGTAGAGCAAAAGGTTATAT-------------------CTAACAGACTAATGGAAGCATTCT-----------------------C--------------------------------------------GTTTGCACTTCTGTCTATCATTTTGTTCGGTTCAGTTCAG--ACTTACAATAAACTGAAAAACA-------------AGAGAGAG--CTATAGT----------------------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................AGTTGTACT---------TTACACGTAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................T-------------------CTAACAGACTAATGGAAGCATTCT-----------------------C--------------------------------------------...........................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................T---------TTACACGTAGAGCAAAAGGTTA.............................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAAAACA-------------AGAGAGAG--C...................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................ACACGTAGAGCAAAAGGT...............................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................TTCGGTTCAGTTCAG--ACTTACAATA.......................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CTCTTGCCGG---TTTCT----------------A--------------------------------------------------TGTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTGCCGG---TTTCT----------------A--------------------------------------------------TGTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........TCACTGATTTCTCTTGCCGG---TTTCT----------------A--------------------------------------------------TG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TACTACA----ATTAGACTGCTGTCCAAATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TTTGCACTTCTGTCTATCATT.....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ATCATTTTGTTCGGTTCAGTTC.....................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CATTTTGTTCGGTTCAGTTC.....................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TTCT----------------A--------------------------------------------------TGTGCTTGTATCAAGGTAAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................GAAAAACA-------------AGAGAGAG--CTATAA..............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................TTACACGTAGAGCAAAAGGTT..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................GG---TTTCT----------------A--------------------------------------------------TGTGCTTGTATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TTGTACT---------TTACACGTAGAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................TCTCTTGCCGG---TTTCT----------------A--------------------------------------------------TGTGCTTGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGATTTCTCTTGCCGG---TTTCT----------------A--------------------------------------------------TGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................CTATCATTTTGTTCGGTTCAGTTCAT--.................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................GTTTCCGAGTTGTACT---------TTACACGTAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............ATTTCTCTTGCCGG---TTTCT----------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................ACAGACTAATGGAAGCATTCT-----------------------C--------------------------------------------G..........................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TTGTATCAAGGTAAGGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
................................................................................................................................................................................................................................................................................................................................................................TATCATTTTGTTCGGTTCAGT.......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCACTGATTTCTCTTGCCGG---T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................GTTGTACT---------TTACACGTAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................T-------------------CTAACAGACTAATGGAAGCATT.................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
......ATTTCACTGATTTCTCTTGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AACTGAAAAACA-------------AGAGAGAG--C...................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.TAGGAATTTCACTGATTTCTCTTGCCGG---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................GTCTATCATTTTGTTCGGTTC..........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................CAATACTG-------TGTTTCCGAGTTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GATTTCTCTTGCCGG---TTTCT----------------A--------------------------------------------------TGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................TGTGCTTGTATCAAGGTAAGGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AGGTTATAT-------------------CTAACAGACTAATGGAAGC....................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TTTCTCTTGCCGG---TTTCT----------------A--------------------------------------------------TGTGCTTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCACTGATTTCTCTTGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTCACTGATTTCTCTTGCCGG---TTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TACACGTAGAGCAAAAGGTTATAT-------------------C......................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCCGG---TTTCT----------------A--------------------------------------------------TGTGCTTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TGCTGTCCAAATTACAATACTG-------TGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TACACGTAGAGCAAAAGGTTATAT-------------------A......................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................CACGTAGAGCAAAAGGTC..............................................................................................................................................................................................................................................................................................................................................................................................................1850.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000
droEre2
TTCTTTTGTAA-----------------ATAATTTAA---TTGCA----------------------------------------------------------------TCACAAAAAGGTTG--GGGAATTCCT----AT--------TAAACCAACTTTAATACGG-------CCTTTACGAATCTTGCTTACT--CAGTTAGTGGAAGTGCAAACGAGAAA-T-------------------TTAAAAATTTTCTGGA----------------ATATCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTAGAAACTGGGGAAAAAATATTAAAATGAAGAGAAACTTAAAAAATTGGAGTGGGCGTGGCAAA-----AAGTTTTTTTTGGCAAATTT----GTAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
GTAGGAATTTCATTGATTTCTCTTGGCGG---TTTCT----------------A--------------------------------------------------TATGCTTGTATCAAGGTAAGGTAATACAATA----ATTTTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAACA-------------AGAGAGAACGCTATAGTCGAGTTCCTCGACTATCTGATACCCGTTACTCAGCTAGTAAAAGTGCGAAGGAGAGTCTTCAACGCCGAAAGT---TTTTGGAGGTTTGTGGGCG------------------------------------------TT--AGTGGGCGTGGCAAA-------AAGTTTTTTGGCAAGTTG----ATAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................ATGCTTGTATCAAGGTAAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...........ATTGATTTCTCTTGGCGG---TTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...................................CT----------------A--------------------------------------------------TATGCTTGTATCAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTTCAACGCCGAAAGT---TTTT.............................................................................................................2411.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGT---TTTTGGAGGTTTGTGGGCG------------------------------------------....................................................2320.50100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCG------------------------------------------TT--AGTGGGCGTGGCAAA-------AAG.......................2430.33100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAGTGCGAAGGAGAGT....................................................................................................................................21120.08100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCTAGTAAAAGTGCGAAGG.........................................................................................................................................22170.06101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAGTGCGAAGGAGA......................................................................................................................................19180.06100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGTGCGAAGGAGA......................................................................................................................................18190.05100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCAGCTAGTAAAAGTGCGAAG..........................................................................................................................................24190.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGCGAAGGAGAGTCTTC................................................................................................................................21200.05100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTTCCTCGACTATCTGATACCCGT..................................................................................................................................................................27200.05110000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CA-------------AGAGAGAACGCTATAGTCGAGTTCCT....................................................................................................................................................................................28200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................ACAACA-------------AGAGAGAACGCTATAGTCGAGT........................................................................................................................................................................................28200.05100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTATCTGATACCCGTTACTCAGCTAGT......................................................................................................................................................31200.05100000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCGACTATCTGATACCCGT..................................................................................................................................................................22200.05100100000000
droEug1
CTAGCTTTCCGCATTCTCT--CCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTTATACCCGTTACTCGGAGAGTAAAAGGGTATATTAGATTCGTTGAAAAGTATGTAACAGGTAGAAGGAAGCGTTTC-----------------------CGACCCTATAAAGTATATATAATGAACAACGAGTACGATTGAGCCATGTCCGTC------TGTCTGTCTGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAACT--------TA-----------------AATCGCTGSizeHit CountTotal NormTotal
No Reads
droBia1
TCTGACTGAAATCA--------------T---TATACCATCTGCAAGGGTTTAA--------------------------------------------------CAAGCGTTACCCACCTTAAG-------------------------------------------------------------------------------------GGAGCAAAAGGA-------------------------------------------------------------------TAATGAAT--------------------------------------------------------------------------------------------ATATATAAGCAGCAAAGGGATATTTTAGGGCGCCACCTACAGG----------------------------------------------------------------------C-TATT------------T-------------------------------------------------C--------ATTAGAT--GTTATTCAAGCGTTTTGGC----CG----ATAGSizeHit CountTotal NormTotal
No Reads
droTak1
TCAACTTACAG----------------------------------------------------------------------------------------------------------------------------------------ACCGTCCAACCTACAGACTTCTCCCCTATAAATGCAGGTTTTTTTTTATACCCGTTAGTCGTAGAGTAAAAGGGTATATTGTATTTGTGCAAAAGTATGTAACAGCTAGAAAGAAGCGTTTC-----------------------TGACCCCATAAAGTATATAT---------------------------------------------------------------GGGCACTTCCACCAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTTC-------------------------------CT----------------A--------------------------------------------------TGTGCTTGCTCCAAGGCAATGTAATACTGAATGTAATTTC--------CAAGTATA---------------------------------------------------------------------------------------------------------------------------CT------------------------------------------------------------------------------------------GCGTGT-------------------------------------------------------------TCTACGTAT--------------------------------------------------T----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CAAATTTTTTTTTCA-GTTTTTCAAATAC---TATAG----------------T--------------------------------------------------TATTTTGCTAGCTAAGTAAGAACA---------------------------------------------------------------------------------------------AATAT-------------------------------------------AATTATTAAAACACATGTATATTAAAT--------------------------------------------------------------------------------------------TTAATAAAGGAATAAAAATAAAAACAAGAGAGAACGCTATAGT----------------------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTAGGAATTTCTATTATTTCTCTTGGAGG---TTTTT----------------A--------------------------------------------------TGTACTTGTATATAGGTATGGTATTTTTATTAATAATATT--------AAAAATTATAACATTT-------TTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TATATAATATTTAAA-----------AAT---CTAAA----------------ATACAAATAAAAACAAGAAAGAAAGCTAACTTTGGTCAGTCAAAGTTTGTATACCCTTGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-----------------AACAATTASizeHit CountTotal NormTotal
No Reads
droAna3
ATATTTAAAAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAAAAAAAATGTGTAT-------------------------------------------TTTATAAGTGAATT--------------------------------------------------------------------------------------------ATGAGGCTACAGAAAGAAGAAAAACA-------------AGAAAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAAAAATAAAGGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAT-TTTATTTAAAATGT--------------------------------------------------------------------------------------------AAAAAACTAAAATAAAATAAAGAAAA-------------CATAATAATAA----------------------TAAA--------------------------------------------------A----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
GTGGTCATCTCTTTAATTTCGCTTGGAGG---CTTCT----------------A--------------------------------------------------TTTACTGGTGTCCAGGTAAGGCGGTAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGCTCATTTGCATT--------------------------------------------------------------------------------------------------TGCCTGC--------------------------------------------------T----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................TGGTGTCCAGGTAAGGCGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................T----------------A--------------------------------------------------TTTACTGGTGTCCAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................................A--------------------------------------------------TTTACTGGTGTCCAGGTAAGGCGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
......ATCTCTTTAATTTCGCTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
GTGGGCATCTCTTTAATTTCGCTTGGAGG---CTTCT----------------A--------------------------------------------------TTTACTGGTGTCCAGGTAAGGCGGTAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGCTCATTTGCATT--------------------------------------------------------------------------------------------------TGCCTGC--------------------------------------------------T----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......ATCTCTTTAATTTCGCTTGGAGG---C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003300000
...........................GG---CTTCT----------------A--------------------------------------------------TTTACTGGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droWil2
CAAGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTTTTCAGCTATACACTGAGAGAAAAACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGCAATACA-------------GGAGAAAAAAGTAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AAAGGGCTAAGGTTAAGCA--CTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT------------------------------------------------------------------------------TTTATACGCCATGC--------------------------------------------------------------------------------------------AAAAACCGAACAAAAAACAAAAAATA-------------AGTAAGGATGCTTTAGTCGAACATCTCTGCTAGCAGA--------------------------------------------------T----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GTGGGCATTTCGCTGCTCTCTCTAGGTGG---CTTCT----------------A--------------------------------------------------CGTGCTCGTCTCCAGGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................CTCTCTAGGTGG---CTTCT----------------A--------------------------------------------------CGTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
......ATTTCGCTGCTCTCTCTAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
TTAAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTAAACTAAACTGAAAAGCA-------------TGAAATAAAGATTTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAGCTTTTT-----------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:24 PM