dsi_7176

three_prime_UTR [2r_18840652_18841660_+]; exon [2r_18840652_18841660_+]; three_prime_UTR [2r_18840456_18840595_+]; exon [2r_18840211_18840595_+]; intron [2r_18840596_18840651_+]

##################################################--------------------------------------------------------################################################## CCCATCTGTCATACCCATCCAAACACCCACAGCCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGAACATTGGAAACTTGTCATGCATTGATTTCATCAAGATTTCGGCAGGGTGGAAACCAAAACGAAACGAATGAGTAAATCTATGTTT ************************************************...((((.(((...(((((.((..........)).))))).....))).))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	O001 Testis	SRR902008 ovaries	SRR902009 testis	SRR618934 dsim w501 ovaries
....................................................................AGAACATTGGAAACT.........................................................................	15	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
..................................................GTAGATGTAGTAACTATGAGAACAT.................................................................................	25	0	1	2.00	2	1	0	0	0	1	0	0	0	0	0
................................................AGGTAGATGTAGCAAC............................................................................................	16	1	1	2.00	2	2	0	0	0	0	0	0	0	0	0
..................................................................TGAGATCATTGGAAAGTTGT......................................................................	20	2	1	2.00	2	0	0	2	0	0	0	0	0	0	0
...........................................TCCAAAGGTAGATGTAGTAACTATGAGA.....................................................................................	28	0	1	2.00	2	1	0	0	0	0	1	0	0	0	0
............................................CCAAAGGTAGATGTAGTAACT...........................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................TAGTAACTATGAGAACATTGGAAACT.........................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................TTTCGGCAGGGTGGAAACCAAAACGA.......................	26	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.................................................GGTAGATGTAGTAACTATG........................................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................CATCAAGATTTCGGCAGG.......................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................AGATGTAGTAACTATGAGG.....................................................................................	19	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..........................................................AGTAACTATGAGAACATTGGAAACT.........................................................................	25	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................TAAAGGTAGATGTAGCAAC............................................................................................	19	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................TTCATCAAGATTTCGGCAGGGTG....................................	23	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0
..............................................AAAGGTAGATGTAGTAACTATGAGAA....................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................TTCGGCAGGGTGGAAACCAAAAC.........................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................TCATCAAGATTTCGGCAGGGTGG...................................	23	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................AGATTTCGGCAGGGTGGAAACCAAAAC.........................	27	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................................AAAGGTAGATGTAGCAACC...........................................................................................	19	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.............................................TAAAGGTAGATGTAGCAACC...........................................................................................	20	3	3	0.33	1	0	0	0	0	1	0	0	0	0	0
................................................AGGTAGATGTAGCAACC...........................................................................................	17	2	8	0.25	2	2	0	0	0	0	0	0	0	0	0
............................................TTAAAGGTAGATGTAGCAAC............................................................................................	20	3	8	0.13	1	0	0	1	0	0	0	0	0	0	0
.........................................GCTCCAAAGATAGATAGAGT...............................................................................................	20	3	8	0.13	1	0	0	0	0	0	0	0	0	0	1
.................................................GGTAGATGTAGCAACC...........................................................................................	16	2	20	0.10	2	0	0	0	0	1	1	0	0	0	0
.....................................................GATGTAGTATCTAGGA.......................................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0	0	0	0

GGGTAGACAGTATGGGTAGGTTTGTGGGTGTCGGTGTGTGTCGAGGTTTCCATCTACATCATTGATACTCTTGTAACCTTTGAACAGTACGTAACTAAAGTAGTTCTAAAGCCGTCCCACCTTTGGTTTTGCTTTGCTTACTCATTTAGATACAAA ************************************************...((((.(((...(((((.((..........)).))))).....))).))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	GSM343915 embryo
.................................GTGTGTGTCGAGGTTTCCATC......................................................................................................	21	0	1	1.00	1	1	0	0
............................TGTCGCTGTGTCTCGAGTTTTC..........................................................................................................	22	3	6	0.17	1	0	0	1
...............GTAGGTTTGTGGGTGC.............................................................................................................................	16	1	7	0.14	1	0	1	0
...............GTAGGTTTGTGGGTGCCTA..........................................................................................................................	19	3	20	0.05	1	0	1	0

Species	Coordinate	ID	Alignment
droSim2	2r:18840546-18840701 +	dsi_7176	CCCATCTGTCAT------------------ACCCATCCAA-------ACACCCACAG-------------------------------------------------------------------------CCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCATCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TCT-ATGTTT------------------------------
droSec2	scaffold_9:1613157-1613312 +		CCCATCTGTCAT------------------ACCCATCCAA-------ACACCCACAG-------------------------------------------------------------------------CCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCATCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TCT-ATGTTT------------------------------
dm3	chr2R:18305092-18305247 +		CCCATCTGTCAT------------------ACCCATCCAA-------ACACCCACAA-------------------------------------------------------------------------CCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCATCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TCT-ATGTTT------------------------------
droEre2	scaffold_4845:12445586-12445741 +		CCCATCTGTCAT------------------ACCCATCCAA-------ACACCCACAA-------------------------------------------------------------------------CCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCATCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TCT-ATGTTT------------------------------
droYak3	2R:18054798-18054954 +		CCCATCTGTCAT------------------GCCCATCCAA-------ACACCCACAA-------------------------------------------------------------------------CCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGAAA---------------------------------------------CATTGGC-AACATGTCATGCAT-TGATTTCATCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TCT-ATGTTT------------------------------
droEug1	scf7180000409672:6221798-6221947 +		CCCATCTGTCAT------------------GCCCATCCCA-------ACAC-------------------------------------------------------------------------------CCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCACCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAGGCGAAACTA-AT-GAGTAAA-TGT-ATGTTT------------------------------
droBia1	scf7180000302143:2382614-2382775 -		CCCATCTGTCAT------------------GCCCATCCAA-------ACACCAACAGC---------------------------CA---------------------------------------CA-CCCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCACCA----GGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAATGA-AT-GAGTAAA-TGT-ATGTTT------------------------------
droTak1	scf7180000415739:176504-176671 +		CCCATCTATCGT------------------GCCCATACAA-------ACACCCTAAAC---------------------------CACACC---------------------------------CTCA-TCCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCACCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TGT-ATGTTT------------------------------
droEle1	scf7180000490713:137451-137636 -		CCCATCCGTCAT------------------GCCCATCCAA-------ACACCCACAAC---------------------------CACAATCACATTAACATC---------------------CACA-TCCACACACTGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-TACTTGTCATGCAT-TGATTTCACCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CCCAA---------------ACCAAAACGAAACGA-AT-GAGTAAA-TGT-ATGTTT------------------------------
droRho1	scf7180000778334:8642-8797 -		CCCATCCGCCAT------------------GCCCATTCAA-------ACACCCAAA-------------------------------------------------------------------------CCCACACACTGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCACCA----AGATTTCGGCAGGGTGA-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TGT-ATGTTT------------------------------
droFic1	scf7180000454066:2223077-2223247 +		CCCATCCCTCAT------------------GCCCATCCAA-------CCACCTACGGC---------------------------CACGCCCA----------------------------TAC--CA-CCCACACACAGCTCCAAAGGTAGATGTAGTAACGATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TAATTTCACCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TGT-ATGTTT------------------------------
droKik1	scf7180000302476:1742710-1742927 -		CTCATCCGTCAC------------------ACCCATCCCACATGCACACAGCCACAGCAGGCCCGGCTCTAGCCCCAGCCCCAGTCCCGCCCG------CATCCACATCCA------CCCA---C----CCCACACACTGCTCCAAAGGTAGATGTAGCCACAATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TAATTTCACCA----GGATTTCGGCAGAAAGG-A----------AA-------------------------CCG--------------------AAAACGAAACGA-AT-GAGTAAA-TGT-ATGTTT------------------------------
droAna3	scaffold_13266:7449525-7449734 -		TCCATGCGTCATGCCCATGCCCATGTCCATGCCCATCCAA-------ACACCCGCAGT---------------------------CAAACTCA------TATTCACATCCAAACCCAAACA---CACA-CATACACACTTCTCCAAAGGTAGATGTAGTAATTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGAGTTCATCA----GGATTTCGGCGGAGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TGT-ATGTTT------------------------------
droBip1	scf7180000396384:263088-263291 -		ACCATACGCCAT------------CGCCATGCCCATCCAA-------ACACCCGCAGT---------------CACTGTCACAGTCAACCTCA------TATTCACATCCA------AACA---CACA-CACACACACTTCTCCAAAGGTAGATGTAGTAATTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGAGTTCATCA----GGATTTCGGCGGAGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TGT-ATGTTT------------------------------
dp5	3:8904154-8904317 +		CGGATC---CAC------------------ACCCATCCA-------------------------------------------------------------------------------------CGCG-AACACACGCTGCTCCAAAGGTAGAAGTAATCATTAAAAAA-AAA---AAA----------------------------AAAAT----CATTGAACAGTTTATCACGCAT-TGATTTTACCA----ATATTTCGAGAAAGTGG-A----------AA-------------------------CCAAA---------------AACGAAACGAATCGA-AT-CGGTAAA-TGT-ATGATT------------------------------
droPer2	scaffold_4:4226770-4226934 +		CGGATC---CAC------------------ACCCATCCA-------------------------------------------------------------------------------------CGCG-AACACACGCTGCTCCAAAGGTAGAAGTAATCATTAAAAAA-AAA--AAAA----------------------------AAAAT----CATTGAACAGTTTATCACGCAT-TGATTTTACCA----ATATTTCGAGAAAGTGG-A----------AA-------------------------CCAAA---------------AACGAAACGAATTGA-AT-CGGTAAA-TGT-ATGATT------------------------------
droWil2	scf2_1100000004510:52397-52570 -		TCCACTCG-CAC------------------ACCCATATAACA-----ACACAC-------------------------------------------------------------------A---CACA-CACACACACTGCTCCAAAGGTAGATGTAATAATTAATGAA-AAG--CAAA----------------------------ACATG----TAAAAGAGAATATGTCAAGCAT-TCATTTCACCA----AGAAATT--------------------------------------------------------------------------------------T-GAGTAAA-TGTAATGTTTAAAAATGAAAAAAAGAAAGAAAAAAAACAA
droVir3	scaffold_12875:19348741-19348955 +		TGCATGTG-CATGCGC--------------CGCCATTTG---------------------ATTGGGCTCTGGTCG--GCTGAGGCCTCAGCCG----------------------------GAT--CACGCCACACACTGCTCCAAAGGTAGATGTAATAATTATAGAG-ACACACACA----------------------------ACACACATACATTA----AATTTTCACACAT-TGACTCTAACA----AGATTTTGAGA--GTTGAAAACAAGAGGAAA-------------------------ACCTA---------------ACCAAAACGAAATGA-AATGAGTA-A-TGT-ACGTTT------------------------------
droMoj3	scaffold_6496:13047322-13047573 +		TGCATGCGCCGC------------------CGCCATTAGA-------TG-----------ATTGGGCTTTGGTCG-TTTTGTAGCCTGAGCCG----------------------------GAT--CATAACACACACTGCTCCAAAGGTAGATGTAATAATTATAGAT-ACACACATACACACATACGCATACAAACACCACACTCACACACATACA-TATA-TAATTTTCACACAT-TGAGTTTAACA----AGATTTCGA--GAGTGG-A----------AA-------------------------ACCTAACCAAAACCAAACAAAACGAAATGAAATGAAAT-GAGTAAAATGT-ACGTTT------------------------------
droGri2	scaffold_15245:6849445-6849642 +		CACACACAT---------------------------TCA---------CA--------------------------------------------------------------------------CTCG-CACGCACACTGCTCCAAAGGTAGATGTAATAAGTACACAC-----------------------------------------------------A-CAATTTTCATACATTTGACTTTAACAAAAAAGATTTCGA-AAAGTGG-AAAGAAAAAAAAAACAATGAGGAGACAAAACCACACCAAACCAAACATAACAAAACGAAATGAAATGAAATGAAAT-GAGTAAATTGT-ACGTTT------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CCCATCTGTCAT------------------ACCCATCCAA-------ACACCCACAG-------------------------------------------------------------------------CCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCATCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TCT-ATGTTT------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................AGA-A---------------------------------------------CATTGGA-AACT.........................................................................................................................................................................	15	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................GTAGATGTAGTAACTATGAGA-A---------------------------------------------CAT..................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................TCCAAAGGTAGATGTAGTAACTATGAGA-...................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................CCAAAGGTAGATGTAGTAACT..........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACT.........................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGA.........................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................GGTAGATGTAGTAACTATG.......................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CATCA----AGATTTCGGCAGG..................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................AGATGTAGTAACTATGAGG-...................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................AGTAACTATGAGA-A---------------------------------------------CATTGGA-AACT.........................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TTCATCA----AGATTTCGGCAGGGTG...............................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................AAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------.....................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAAC...........................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TCATCA----AGATTTCGGCAGGGTGG-.............................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAAC...........................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CCCATCTGTCAT------------------ACCCATCCAA-------ACACCCACAG-------------------------------------------------------------------------CCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCATCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TCT-ATGTTT------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................................CAGCTCCAAAGGTAGATGTAGTAAC...........................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................................TCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AA..............................................................	27	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................................................CATCA----AGATTTCGGCAGG..................................................................................................................................	18	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................GATTTCATCA----AGATTTCGGCAGGGT................................................................................................................................	25	1	1.00	1	0	0	1	0
..........................................................................................................................................................GTAGTAACTATGAGA-A---------------------------------------------CATT.................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.................................CATCCAA-------ACACCCACAG-------------------------------------------------------------------------CCA........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
..............................................................................................................................................CCAAAGGTAGATGTAGTA.............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
......................................................................................................................................................................................................................................................ATCA----AGATTTCGGCAGGGT................................................................................................................................	19	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................TTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------A...............................................................	20	1	1.00	1	0	1	0	0
.......................................................................................................................................CACAGCTCCAAAGGTAGATGTAGT..............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0

dm3

CCCATCTGTCAT------------------ACCCATCCAA-------ACACCCACAA-------------------------------------------------------------------------CCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCATCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TCT-ATGTTT------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................AACTATGAGA-A---------------------------------------------CATTGGA-AACT.........................................................................................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................CACCCACAA-------------------------------------------------------------------------CCACACACAGCTCC.............................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGT............................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAG.............................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................ACACACAGCTCCAAAGGTAGATGT.................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................ACAGCTCCAAAGGTAGATGTAGTAAC...........................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................GCTCCAAAGGTAGATGTAGT..............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........T------------------ACCCATCCAA-------ACACCCAC......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................AGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-A..................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------A...............................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CCACACACAGCTCCAAAGGTA......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CGA-AT-GAGTAAA-TCT-ATGTTT------------------------------	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CCCACAA-------------------------------------------------------------------------CCACACACAGC................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CCCATCTGTCAT------------------ACCCATCCAA-------ACACCCACAA-------------------------------------------------------------------------CCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCATCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TCT-ATGTTT------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................TGATTTCATCA----AGATTTCGGCAGGGTG...............................................................................................................................	27	1	14.00	14	0	0	0	0	0	0	14
.........................................................................................................................................................................................................................ATTGGA-AACTTGTCATGCAT-T.............................................................................................................................................................	21	1	2.00	2	0	0	0	0	1	1	0
............................................................................................................................................................................................................................................................................................A-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-T.......................................	25	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................TTGGA-AACTTGTCATGCAT-TGATT.........................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................ATGCAT-TGATTTCATCA----AGATTTCGGC.....................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................GATGTAGTAACTATGAGA-A---------------------------------------------.....................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................GATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------A...............................................................	22	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................ATCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------A...............................................................	27	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................ACACACAGCTCCAAAGGTAGA....................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................ACACACAGCTCCAAAGGTAGAT...................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0

droYak3

CCCATCTGTCAT------------------GCCCATCCAA-------ACACCCACAA-------------------------------------------------------------------------CCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGAAA---------------------------------------------CATTGGC-AACATGTCATGCAT-TGATTTCATCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TCT-ATGTTT------------------------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

CCCATCTGTCAT------------------GCCCATCCCA-------ACAC-------------------------------------------------------------------------------CCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCACCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAGGCGAAACTA-AT-GAGTAAA-TGT-ATGTTT------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCCATCTGTCAT------------------GCCCATCCAA-------ACACCAACAGC---------------------------CA---------------------------------------CA-CCCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCACCA----GGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAATGA-AT-GAGTAAA-TGT-ATGTTT------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCCATCTATCGT------------------GCCCATACAA-------ACACCCTAAAC---------------------------CACACC---------------------------------CTCA-TCCACACACAGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCACCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TGT-ATGTTT------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCCATCCGTCAT------------------GCCCATCCAA-------ACACCCACAAC---------------------------CACAATCACATTAACATC---------------------CACA-TCCACACACTGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-TACTTGTCATGCAT-TGATTTCACCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CCCAA---------------ACCAAAACGAAACGA-AT-GAGTAAA-TGT-ATGTTT------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCCATCCGCCAT------------------GCCCATTCAA-------ACACCCAAA-------------------------------------------------------------------------CCCACACACTGCTCCAAAGGTAGATGTAGTAACTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGATTTCACCA----AGATTTCGGCAGGGTGA-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TGT-ATGTTT------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCCATCCCTCAT------------------GCCCATCCAA-------CCACCTACGGC---------------------------CACGCCCA----------------------------TAC--CA-CCCACACACAGCTCCAAAGGTAGATGTAGTAACGATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TAATTTCACCA----AGATTTCGGCAGGGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TGT-ATGTTT------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTCATCCGTCAC------------------ACCCATCCCACATGCACACAGCCACAGCAGGCCCGGCTCTAGCCCCAGCCCCAGTCCCGCCCG------CATCCACATCCA------CCCA---C----CCCACACACTGCTCCAAAGGTAGATGTAGCCACAATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TAATTTCACCA----GGATTTCGGCAGAAAGG-A----------AA-------------------------CCG--------------------AAAACGAAACGA-AT-GAGTAAA-TGT-ATGTTT------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCCATGCGTCATGCCCATGCCCATGTCCATGCCCATCCAA-------ACACCCGCAGT---------------------------CAAACTCA------TATTCACATCCAAACCCAAACA---CACA-CATACACACTTCTCCAAAGGTAGATGTAGTAATTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGAGTTCATCA----GGATTTCGGCGGAGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TGT-ATGTTT------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................................................................CGGCGGAGTGG-A----------AA-------------------------CC---------------------AAAACG..........................................................	22	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................AGTTCATCA----GGATTTCGGC.....................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.CCATGCGTCATGCCCATGCC........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
............................................................................................................CCAAACCCAAACA---CACA-C...........................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0

droBip1

ACCATACGCCAT------------CGCCATGCCCATCCAA-------ACACCCGCAGT---------------CACTGTCACAGTCAACCTCA------TATTCACATCCA------AACA---CACA-CACACACACTTCTCCAAAGGTAGATGTAGTAATTATGAGA-A---------------------------------------------CATTGGA-AACTTGTCATGCAT-TGAGTTCATCA----GGATTTCGGCGGAGTGG-A----------AA-------------------------CC---------------------AAAACGAAACGA-AT-GAGTAAA-TGT-ATGTTT------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

CGGATC---CAC------------------ACCCATCCA-------------------------------------------------------------------------------------CGCG-AACACACGCTGCTCCAAAGGTAGAAGTAATCATTAAAAAA-AAA---AAA----------------------------AAAAT----CATTGAACAGTTTATCACGCAT-TGATTTTACCA----ATATTTCGAGAAAGTGG-A----------AA-------------------------CCAAA---------------AACGAAACGAATCGA-AT-CGGTAAA-TGT-ATGATT------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................ACACACGCTGCTCCAAAGGTA......................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................G-AACACACGCTGCTCCAAAGGTA......................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AAAAT----CATTGAACAGTTTATCACGCAT-T.............................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................CACACGCTGCTCCAAAGGTA......................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TCGAGAAAGTGG-A----------AA-------------------------CCAAA---------------AACG...............................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0

droPer2

CGGATC---CAC------------------ACCCATCCA-------------------------------------------------------------------------------------CGCG-AACACACGCTGCTCCAAAGGTAGAAGTAATCATTAAAAAA-AAA--AAAA----------------------------AAAAT----CATTGAACAGTTTATCACGCAT-TGATTTTACCA----ATATTTCGAGAAAGTGG-A----------AA-------------------------CCAAA---------------AACGAAACGAATTGA-AT-CGGTAAA-TGT-ATGATT------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................CCAAAGGTAGAAGTAATC.............................................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
.................................................................................................................................................................................................................................................................TTTCGAGAAAGTGG-A----------AA-------------------------CCAAA---------------AACG...............................................................	26	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................CGAGAAAGTGG-A----------AA-------------------------CCAAA---------------AACGA..............................................................	24	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GAAAGTGG-A----------AA-------------------------CCAAA---------------AACGA..............................................................	21	1	1.00	1	0	0	0	0	0	1

droWil2

TCCACTCG-CAC------------------ACCCATATAACA-----ACACAC-------------------------------------------------------------------A---CACA-CACACACACTGCTCCAAAGGTAGATGTAATAATTAATGAA-AAG--CAAA----------------------------ACATG----TAAAAGAGAATATGTCAAGCAT-TCATTTCACCA----AGAAATT--------------------------------------------------------------------------------------T-GAGTAAA-TGTAATGTTTAAAAATGAAAAAAAGAAAGAAAAAAAACAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................AA----------------------------ACATG----TAAAAGAGAATAT........................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................AG--CAAA----------------------------ACATG----TAAAAGAGA............................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0

droVir3

TGCATGTG-CATGCGC--------------CGCCATTTG---------------------ATTGGGCTCTGGTCG--GCTGAGGCCTCAGCCG----------------------------GAT--CACGCCACACACTGCTCCAAAGGTAGATGTAATAATTATAGAG-ACACACACA----------------------------ACACACATACATTA----AATTTTCACACAT-TGACTCTAACA----AGATTTTGAGA--GTTGAAAACAAGAGGAAA-------------------------ACCTA---------------ACCAAAACGAAATGA-AATGAGTA-A-TGT-ACGTTT------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................ATTGGGCTCTGGTCG--GCTGAGGCCT......................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................G---------------------ATTGGGCTCTGGTCG--GCT.............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................GCTCTGGTCG--GCTGAGGCCTCAGCC.................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CCTA---------------ACCAAAACGAAATG.....................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TCAGCCG----------------------------GAT--CACGCCACA......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ATTTG---------------------ATTGGGCTCTGGTCG--G...............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GCCATTTG---------------------ATTGGGCTCTGGTCG--................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TTTTGAGA--GTTGAAAACAAGA.....................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................AT-TGACTCTAACA----AGATTTTGAGA--..................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GGGCTCTGGTCG--GCTGAGGCCTC.....................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GC--------------CGCCATTTG---------------------ATTGGGCTCTG......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTG---------------------ATTGGGCTCTGGTCG--GCT.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................GAGGCCTCAGCCG----------------------------GAT--CACGCC.........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AACA----AGATTTTGAGA--GTTG..............................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................ATAGAG-ACACACACA----------------------------ACACACATA.....................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CCACACACTGCTCCAAAGG........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................CACACATACATTA----AATTTTCACACAT-TG............................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GC--------------CGCCATTTG---------------------ATTGGGCTCT.......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ACATTA----AATTTTCACACAT-TGA...........................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................ATTATAGAG-ACACACACA----------------------------ACACACAT......................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------------------------ACCTA---------------ACCAAAACGAAAT......................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TCCAAAGGTAGATGTAATAATTATA.......................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TTTG---------------------ATTGGGCTCTGGTCG--GC..............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................CCTCAGCCG----------------------------GAT--CACGCCACA......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CATGCGC--------------CGCCATTTG---------------------ATTGGGCTCT.......................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CGC--------------CGCCATTTG---------------------ATTGGGCTC........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................A---------------ACCAAAACGAAATGA-AATGAGTA-A-TG......................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................AGATGTAATAATTATAGAG-A..................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TCTAACA----AGATTTTGAGA--GTT...............................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TCTAACA----AGATTTTGAGA--GTTG..............................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................AAAACAAGAGGAAA-------------------------ACCTA---------------ACA................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CACACACA----------------------------ACACACATAC....................................................................................................................................................................................	18	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CACACACA----------------------------ACACACATACA...................................................................................................................................................................................	19	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGCATGCGCCGC------------------CGCCATTAGA-------TG-----------ATTGGGCTTTGGTCG-TTTTGTAGCCTGAGCCG----------------------------GAT--CATAACACACACTGCTCCAAAGGTAGATGTAATAATTATAGAT-ACACACATACACACATACGCATACAAACACCACACTCACACACATACA-TATA-TAATTTTCACACAT-TGAGTTTAACA----AGATTTCGA--GAGTGG-A----------AA-------------------------ACCTAACCAAAACCAAACAAAACGAAATGAAATGAAAT-GAGTAAAATGT-ACGTTT------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................ACATACACACATACGCATACAAA........................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................ATTTCGA--GAGTGG-A----------AA-------------------------ACC....................................................................................	19	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................CCACACTCACACACATACA-TATA-TA...........................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................ATAACACACACTGCTCCAAAGGTAGATGT.................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................ACGCATACAAACACCACACTCACACA.........................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................GAGTTTAACA----AGATTTCGA--GAGTGG-A----------..................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................GTTTAACA----AGATTTCGA--GAGTGG-A----------A.................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...................................................................TTTGGTCG-TTTTGTAGCCTGAGCCG----------------------------....................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................ATACACACATACGCATAC...........................................................................................................................................................................................................	18	8	0.13	1	1	0	0	0	0	0

droGri2

CACACACAT---------------------------TCA---------CA--------------------------------------------------------------------------CTCG-CACGCACACTGCTCCAAAGGTAGATGTAATAAGTACACAC-----------------------------------------------------A-CAATTTTCATACATTTGACTTTAACAAAAAAGATTTCGA-AAAGTGG-AAAGAAAAAAAAAACAATGAGGAGACAAAACCACACCAAACCAAACATAACAAAACGAAATGAAATGAAATGAAAT-GAGTAAATTGT-ACGTTT------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................................................................................................................................................................................................................................................................................................................ACAAAACGAAATGAAATGAAATG.....................................................	23	1	1.00	1	1	0
............................................................................................................................CTCG-CACGCACACTGCTCCAAAGGTA......................................................................................................................................................................................................................................................	26	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................ACAATGAGGAGACAAAACC.............................................................................................	19	1	1.00	1	1	0

dsi_7176

2r:18840596-18840651 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-5.3	-5.3	-5.2