ID:

dsi_7163

 Coordinate:

3l:11829652-11829710 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_11829513_11829651_-]; exon [3l_11829366_11829651_-]; CDS [3l_11829711_11829817_-]; exon [3l_11829711_11829817_-]; intron [3l_11829652_11829710_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------##################################################
GAGAAATCCCTGCACTATCTCTACGAGGAGAACGAAAAAGCCCAGATTCGGTAAGGCGAAGGATACAACCAAGTAATATCCCATTGTAAACGAATATATTTTCTTTCAGGCTCCTTGAGGACGAAGTACGTCGCAAGATGTCGGAGCGCAACGATTACC
**************************************************.....((((.(((((..((...))..)))))..))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M053
female body
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M023
head
 SRR902009
testis
...................................................................................................................TGAGGACGAAGTACGTCGCAAGATGT.................. 26 0 1 4.00 4 3 0 0 0 0 1 0 0 0 0 0
...................................................................................................................TGAGGACGAAGTACGTCGCAAGATGTC................. 27 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
................................................................................................................................CGTCGCAAGATGTCGGAGCGC.......... 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................GAAGTACGTCGCAAGATGTCGGAGCGC.......... 27 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0
..........................................................................................................TCGGCTCCTTGAGGACGAAGTACGTCGCA........................ 29 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................CGCAAGATGTCGGAGCGCAACGAT.... 24 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0
..........................................................................................................TCGGCTCCTTGAGGACGAAGTACGTCGC......................... 28 2 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0
..................................................................................................................TTGAGGACGAAGTACGTCGCAAGATG................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................CGTCGCAAGATGTCGGAGCGCAACA...... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................GAAGTACGTCGCAAGATG................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................GTCGCAAGATGTCGGAGC............ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................TCGCAAGATGTCGGAGCGCAACGAT.... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................GATGTCGGAGCGCAACGATTACC 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................CGAAGTACGTCGCAAGATG................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................GGCTTCTTGAGGACGAAGTACGTCGCA........................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................CGAAGTACGTCGCAAGATGTCGGAGC............ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................TACGAGGAGAACGAAAAAGCCCAGATT............................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................GCAAGATGTCGGAGCGCA......... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..GAAATCCCTGCACTATCTCTACGAGGA.................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TTGAGGACGAAGTACGTCGCAAGA..................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TTGAGGACGAAGTACGTCGCAAGATGTC................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTCGGCTCCTTGAGGACGAAGTACGTCGCA........................ 30 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................AGGACGAAGTACGTCGCAAGATGTC................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................AGATGTCGGAGCGCAACGATTACC 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......TCCCTGCACTATCTCTACGAGGAGAACA............................................................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................GAGGACGAAGTACGTCGCAAGATGTC................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......TAAATGCACTATCTCTACGA..................................................................................................................................... 20 3 8 0.75 6 0 0 0 1 0 0 1 0 0 4 0
.............................................GTTCGGTAAGGCGAA................................................................................................... 15 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
.................................................GGTAAGACGAAGGAT............................................................................................... 15 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................TGTCGGAGCGAGGCGATTA.. 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1
......................................AGCACTGTTTCGGTAAGGC...................................................................................................... 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TGGCAAGATGTCGGACC............ 17 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AAGGCTTATTGAGGACGAA.................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................GAACGCGACGATTACC 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
......................................AGCACTGTTTCGGTAAGG....................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTCTTTAGGGACGTGATAGAGATGCTCCTCTTGCTTTTTCGGGTCTAAGCCATTCCGCTTCCTATGTTGGTTCATTATAGGGTAACATTTGCTTATATAAAAGAAAGTCCGAGGAACTCCTGCTTCATGCAGCGTTCTACAGCCTCGCGTTGCTAATGG
**************************************************.....((((.(((((..((...))..)))))..))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
...................................TTTTGGGGTCTAAGTCATA......................................................................................................... 19 3 20 0.10 2 2 0
.............................................................................................................AGAGGAACCCCTGCTTC................................. 17 2 20 0.05 1 0 1

Generated: 04/24/2015 at 10:38 AM