ID:

dsi_7109

 Coordinate:

2r:5297220-5297369 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-27.8 -27.7 -27.7

Flybase annnotation

CDS [2r_5297370_5297805_-]; exon [2r_5297370_5297805_-]; intron [2r_5297037_5297369_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCAAAGGATCGATTCGGCATGATCTGCAAGGCGTGCCACGCCCACAACGGTGGGTTATGATTACTAAAGGAGAACTTCTATAATTAGGCATAGAAACATTGTATATCGTAGCTGAGAAACCGGTTATGCTTTCGCTTTCATTGTTTAGTTCGCTAGCTCTATGATCCACAAAAGAATCTGCTTAATTTAAAGACAATTCTTTACATTTTTCAAAAGCTGCAATGTTTTATATGTTTACTTTAATAATTT
**************************************************(((((((((..........((((.....(((.(((((((((..((((...((.....((((((((......))))))))....)).))))..)))))))))...))))))))))))))))....((((.(((((......))).))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M053
female body
 SRR902009
testis
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
TCCAAAGGATCGATTCGGCAT..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0
................................CGTGCCACGCCCACAACGGAAT.................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0
.....AGGATCGATTCGGCATGATCTGCAAGG.......................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................TCTATGATCCACAAAAGAATCTG..................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0
.........................TGCAAGGCGTGCCACGCCCACAACGGA...................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................AACGGGCTATGCTTTAGCTTT............................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 1 0
........................................................................................................................CCGGTTTTGCTTTCGC.................................................................................................................. 16 1 4 0.25 1 1 0 0 0 0 0 0
...................ATGACCTGCAGGGCGCGCCA................................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0
........................................................TATGATGACTAAAGGA.................................................................................................................................................................................. 16 1 7 0.14 1 0 1 0 0 0 0 0
...........................................................................................................................................................TGCTCAATGATCGACAAAAG........................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 1
................................................................................................................................................................TATGATCCACAAAACTACC....................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

AGGTTTCCTAGCTAAGCCGTACTAGACGTTCCGCACGGTGCGGGTGTTGCCACCCAATACTAATGATTTCCTCTTGAAGATATTAATCCGTATCTTTGTAACATATAGCATCGACTCTTTGGCCAATACGAAAGCGAAAGTAACAAATCAAGCGATCGAGATACTAGGTGTTTTCTTAGACGAATTAAATTTCTGTTAAGAAATGTAAAAAGTTTTCGACGTTACAAAATATACAAATGAAATTATTAAA
**************************************************(((((((((..........((((.....(((.(((((((((..((((...((.....((((((((......))))))))....)).))))..)))))))))...))))))))))))))))....((((.(((((......))).))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
...............................................................................................ATGTGGCATATAGCATCG......................................................................................................................................... 18 3 20 3.20 64 64 0 0 0 0
..............................................................................................................................................................................................................AAACAGTTTTCGGCGTTACA........................ 20 2 1 1.00 1 0 1 0 0 0
...............................................................................................ATGTGGCATATAGCATCGA........................................................................................................................................ 19 3 10 0.80 8 8 0 0 0 0
................................................................................................TGTGGCATATAGCATCG......................................................................................................................................... 17 2 3 0.67 2 2 0 0 0 0
................................................................................................................................CGAAAGCGAAAGTAA........................................................................................................... 15 0 3 0.33 1 0 0 0 1 0
..................................................................................................................................................ATCACGAGATGGAGATACTA.................................................................................... 20 3 4 0.25 1 0 0 1 0 0
...........................................................................................................................................................TCGAGCTACTAGGTGTAT............................................................................. 18 2 4 0.25 1 0 0 1 0 0
.........................................................................................................................................................................................TAAATTTATGTTAAGAAA............................................... 18 1 8 0.13 1 0 0 0 0 1

Generated: 04/23/2015 at 12:11 PM