ID:

dsi_7048

 Coordinate:

3l:16216802-16216951 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.8 -38.7 -38.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACGAGGGTCGCGTCTATCACTACCGCATCTCAGAGGATCCCGATGGGAAAGTCTTCGTTACCCAGGAGGCCAAATTCAATACTCTGGCCGAGCTGGTGCATCATCACAGCGTGCCCCATGAGGGTCACGGGTTGATAACTCCGCTCCTGTATCCGGCGCCCAAGCAGAACAAGCCCACCGTCTTCCCGCTGAGTCCCGAGCCGGATGAGTGGGAAATCTGCCGGACGGACATCATGATGAAGCACAAGCT
**************************************************...((((..((.(((..(((((............)))))..((((...........))))..((((.....))))..((((..(((......(((..(((.((..((......)).)))))))).....)))..))))))).))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
........................................................................................CGGGCTGCTGCATCGTCACA.............................................................................................................................................. 20 3 8 10.63 85 84 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TCTGCCGGACGGACATCATGATGAA......... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGGGAAATCTGCCGGACGGACATCAA............... 26 1 1 1.00 1 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................................TGCCGGACGGACATCATG.............. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................TCTGCCGGACGGACATCATGATGAAG........ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...............................................AAAGTCTTCGTTACCCAGGA....................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................CAAATTCAATACTCTGGCC................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.CGAGGGTCGCGTCTATC........................................................................................................................................................................................................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................TCCCGATGGGAAAGTCTTCGTTACCCA.......................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.........................................................................ATTCAATACTCTGGCCGAGCC............................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGAGTCCCGAGCCGGATG........................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................AGGGAAAGCTGCCGGACG....................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0
........................................................................................CGGGCTGCTGCATCATCACA.............................................................................................................................................. 20 2 5 0.20 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CCCGCTAAGTCCCGA................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................AATCTGCGGGACGGTGATCATG.............. 22 3 8 0.13 1 0 0 0 1 0 0 0 0 0
........................................................................................CGGGCTGCTGCATCCTCACA.............................................................................................................................................. 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GCAGGACGGAGATCATG.............. 17 2 18 0.06 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................CGGTGAGTCACTAGCCGG.............................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGCTCCCAGCGCAGATAGTGATGGCGTAGAGTCTCCTAGGGCTACCCTTTCAGAAGCAATGGGTCCTCCGGTTTAAGTTATGAGACCGGCTCGACCACGTAGTAGTGTCGCACGGGGTACTCCCAGTGCCCAACTATTGAGGCGAGGACATAGGCCGCGGGTTCGTCTTGTTCGGGTGGCAGAAGGGCGACTCAGGGCTCGGCCTACTCACCCTTTAGACGGCCTGCCTGTAGTACTACTTCGTGTTCGA
**************************************************...((((..((.(((..(((((............)))))..((((...........))))..((((.....))))..((((..(((......(((..(((.((..((......)).)))))))).....)))..))))))).))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
................................................................................................................................................................................TGGTAGAAGGGCGACT.......................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................CCGCGGGTTCGGCTCGTTCAGGT......................................................................... 23 3 5 0.40 2 0 2 0 0 0 0 0 0 0
................................................................................................ACGTAGAAGTGTCGC........................................................................................................................................... 15 1 8 0.38 3 3 0 0 0 0 0 0 0 0
................................................................................................ACGTAGAAGTGTCGCACC........................................................................................................................................ 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAGAGCGACTCAGGG..................................................... 15 1 9 0.22 2 0 2 0 0 0 0 0 0 0
...........................................................................................................................................................CGCGGGTTCGGCTCGTTCAGGT......................................................................... 22 3 5 0.20 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................CGGATCGTCTTGTTCGGGG......................................................................... 19 3 15 0.13 2 0 0 2 0 0 0 0 0 0
.......................................................................................................................................................ACGCTGCGGGTTCGTCT.................................................................................. 17 2 20 0.10 2 0 1 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................ATAGTACTACTTCGT...... 15 1 10 0.10 1 0 0 0 1 0 0 0 0 0
........................................................................................................................TCCCAGTGCTCAACAAGTG............................................................................................................... 19 3 12 0.08 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................CTATTGTACTACTTCATGTT... 20 3 15 0.07 1 0 0 0 0 1 0 0 0 0
..........................................................AGGGGTCCGCCAGTTTAAG............................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 1 0 0 0 0 0
...................................................................................GAACGGCTCGACCAC........................................................................................................................................................ 15 1 18 0.06 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................GGCCGAAGGGCGAATC......................................................... 16 2 19 0.05 1 0 1 0 0 0 0 0 0 0
...........CAGATCGTGCTGGCGTGG............................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0
................................................................................................................................CCCATCTAGTGAGGCG.......................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.................................................................CTCCGGTTGAAGTTA.......................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GGTGGGACTACTTCGTGTTC.. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 03:13 AM