ID:

dsi_7043

 Coordinate:

2r:2456730-2456879 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.0 -14.9 -14.9

Flybase annnotation

exon [2r_2456253_2456729_+]; CDS [2r_2456253_2456729_+]; intron [2r_2456730_2457281_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGATTGGGCGACTTACGATCAAAATGCTACTCTTAAAACGAATGACCAAGGTGAGAAGCTTCGTTCAAAAAGTAACGAGTAAAAATATGTAACTCGAAGCATCTTTTCGTATATGGATATTTTCATGTATACATGCATATATATAACATTGTAAGTAGAAATCCATCTACATGTCTGCATATATCAGGAACTCATTCTAAGGATTGGTTTTCAGTGTCCAGGAATCCTATTATAGAAGCTTTCAGGGCTG
***************************************************************************************.......(((((.....)))))((((((((....))))))))...(((((.((((............(((((......))))))))).)))))...................*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M024
male body		 SRR902008
ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 M025
embryo
 O002
Head
.....................................................................................................................................................................................TATCAGGAACTCATTCTAAGGATTGGT.......................................... 27 0 1 24.00 24 21 0 3 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTCTAAGGATTGGTTTTCAGTGTC................................ 24 0 1 10.00 10 9 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCAGTGTCCAGGAATCCTATTATAGA.............. 26 0 1 9.00 9 7 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TCATTCTAAGGATTGGTTTTCAGTGTC................................ 27 0 1 6.00 6 5 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................TCTGCATATATCAGGAACTCATTCTA................................................... 26 0 1 6.00 6 0 0 0 4 0 2 0 0 0 0 0 0
...................................................................................................................................................................................TATATCAGGAACTCATTCTAAGGATTGGT.......................................... 29 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGTCCAGGAATCCTATTATAGAAGCTT......... 27 0 1 5.00 5 2 2 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGTCCAGGAATCCTATTATAGAAGCT.......... 26 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCCAGGAATCCTATTATAGAAGCTT......... 25 0 1 4.00 4 0 3 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCAGGAACTCATTCTAAGGATTGGT.......................................... 25 0 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCCAGGAATCCTATTATAGAAGCTTT........ 26 0 1 4.00 4 2 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATATCAGGAACTCATTCTAAGGATTGGT.......................................... 28 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TATATCAGGAACTCATTCTAAGGAT.............................................. 25 0 1 4.00 4 0 3 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................TTTGTCCAGGAATCCTATTATAGA.............. 24 2 1 3.00 3 1 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TGCATATATCAGGAACTCATTCTAAGGA............................................... 28 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TCTACATGTCTGCATATATCAGGAACTCA........................................................ 29 0 1 3.00 3 2 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................CATATATCAGGAACTCATTCTAAGGA............................................... 26 0 1 3.00 3 2 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................TGCATATATCAGGAACTCATTCTAAGGAT.............................................. 29 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CTCATTCTAAGGATTGGTTTTCAGTGTC................................ 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TGCATATATCAGGAACTCATTCTA................................................... 24 0 1 3.00 3 0 0 0 2 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................TATCAGGAACTCATTCTAAGGATTGGTT......................................... 28 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TACATGTCTGCATATATCAGGAACTC......................................................... 26 0 1 3.00 3 2 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................TAAGTAGAAATCCATCTACATGTCTGCA....................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CTCATTCTAAGGATTGGTTTTCAGTG.................................. 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTCAGTGTCCAGGAATCCTATTATAGA.............. 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................TGTAACTCGAAGCATCTTTTCGTATA......................................................................................................................................... 26 0 1 2.00 2 0 0 0 0 0 0 0 1 1 0 0 0
.......................................................................................................................................................................................................AGGATTGGTTTTCAGTGTCCAGGAA.......................... 25 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGGAATCCTATTATAGAAGCTTTCAGGGC.. 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TATATCAGGAACTCATTCTAAGGATTGGTT......................................... 30 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ATCCATCTACATGTCTAC........................................................................ 18 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
.............................................................................................................................................................................TCTGCATATATCAGGAACTCATT...................................................... 23 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
........................................................................................................................................................AAGTAGAAATCCATCTACATGTCTGCA....................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TATCAGGAACTCATTCTAAGGATTGG........................................... 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ATCAGGAACTCATTCTAAGGATTGGT.......................................... 26 0 1 2.00 2 0 0 0 0 0 1 0 1 0 0 0 0
...............................................................................................................................................................................................TCATTCTAAGGATTGGTTTTCAGT................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TCTGCATATATCAGGAACTCATTCTAA.................................................. 27 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
......................................................................................................................................................................................ATCAGGAACTCATTCTAAGGATTGGTT......................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTTGTCCAGGAATCCTATTATAGAAGCT.......... 28 2 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTTCAGTGTCCAGGAATCCTATTATAGA.............. 28 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCAGGAACTCATTCTAAGGATTGGTT......................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...........................TACTCTTAAAACGAATGACCAAGGTGAGA.................................................................................................................................................................................................. 29 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0
......................AATGCTACTCTTAAAACGAATGACC........................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................TGAGTGTCCAGGAATCCTATTATAGA.............. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TGCATATATCAGGAACTCATT...................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........ACTTACGATCAAAATGCTACTC.......................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................TGCTACTCTTAAAACGAATGACCAAGGT...................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................CAGGAACTCATTCTAAGGAT.............................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........CGACTTACGATCAAAATGC............................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................TATAGAAGCTTTCAGGGCT. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATATATCAGGAACTCATTCTAAGGAT.............................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTCAGTGTCCAGGAATCCTAT.................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................AACGAATGACCAAGGTGAGAAGCTTC............................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................CTCGAAGCATCTTTTCGTAT.......................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................TCAGTGTCCAGGAATCCTATTATAGAA............. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TACATGTCTGCATATATC................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATCCTATTATAGAAGCTT......... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AACTCATTCTAAGGATTGGTTTTCAGT................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................TTCTAAGGATTGGTTTTCAGTGTCC............................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TATATCAGGAACTCATTCTAAGGA............................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TCATTCTAAGGATTGGTTTTCAGTGT................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TGTCTGCATATATCAGGAACTCATT...................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTTTCATGTATACATGCAT................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................TATATCAGGAACTCATTCTAAGGATTGG........................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAAGGATTGGTTTTCAGTGTCCAGGAA.......................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATTCTAAGGATTGGTTTTCAGG................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................GTAAAAATATGTAACTCGAAGCATC................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................ATTATAGAAGCTTTCAGGG... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................ATTGGTTTTCAGTGTCCAGGAA.......................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................TACTCTTAAAACGAATGACCAAGGTGGGA.................................................................................................................................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATATCAGGAACTCATTCTAAGGATTGGTT......................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CTGCATATATCAGGAACTCATTCTAAGGAA.............................................. 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................TTAAAACGAATGACCAAG........................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.........GACTTACGATCAAAATGCTACTCT......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................TATCAGGAACTCATTCTAAGGAT.............................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTTTCAGTGTCCAGGAATCCTATTATA................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAGGAATCCTATTATAGAAGCTTTCAGG.... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................CATGTATACATGCATATATATAACATTGTA................................................................................................. 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTTCAGTGTCCAGGAATCCT...................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................TCAGGATTGGTTTTCAGTGTCCAGGAA.......................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTTCAGTGTCCAGGAATC........................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CATATATCAGGAACTCATTCTAAGGAT.............................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TATATAACTTTGTAAGTAGAAATCCATC................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCCTATTATAGAAGCTTTCAGG.... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CTAAGGATTGGTTTTCAGTGTC................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGTTTTCAGTGTCCAGGA........................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TGCATATATCAGGAACTC......................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................TATATAACTTTGTAAGTAGAAATCCA..................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTGGTTTTCAGTGTCCAGGAATCCTA..................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATCTTTTCGTATATGGATATTTTCAT............................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................CATTCTAAGGATTGGTTTTCAGTGTC................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CTACATGTCTGCATATATCAGGAACTCA........................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAGGATTGGTTTTCAGTGTC................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTTTCAGTGTCCAGGAATCCTATTAT................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGTTTTCAGTGTCCAG............................. 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATATCAGGAACTCATTCTAAGGAT.............................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAACTTTGTAAGTAGAAATCCATCTACA............................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................AACTTTGTAAGTAGAAATCCATCTACA............................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGTTTTCAGTGTCCAGG............................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATCCTATTATAGAAGCTTTCAGGGCT. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTGTCCAGGAATCCTATTATAGAAGCT.......... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCCAGGAATCCTATTATAGAA............. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATTCTAAGGATTGGTTTTCAGTGTC................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATATATCAGGAACTCATTCTAAGGATTGGT.......................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAACTCGAAGCATTTTTTCGAATATGGA..................................................................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGTCCAGGAATCCTATTATAGAAGC........... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCAGTGTCCAGGAATCC....................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTCTAAGGATTGGTTTTCAGTGTCCAGGA........................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCAGTGTCCAGGAATCCTATTATA................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATTCTAAGGATTGGTTTTC...................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................ATGTAACTCGAAGCATCTTTT............................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTCAGTGTCCAGGAATCCTATTATAGAA............. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATCCTATTATAGAAGCTTTCAGGGC.. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............TACGATCAAAATGCTACTCTTAAAACGAA................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................GCATATATCAGGAACTCATTCTAAGGAT.............................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TATGTAACTCGAAGCATCTTTTCGTA........................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................GAATGACCAAGGTGAGAAGCTTCGTT......................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................AAATGCTACTCTTAAA..................................................................................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ATCCATCTAGATGTCTGTAGAT.................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATTCTGAGGATTGGTT......................................... 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGGATTGGCTCTCAGTGT................................. 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................AACTCTAAGCGTCGTTTCG............................................................................................................................................. 19 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TAATAGAAGCTTTGGGGGC.. 19 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CCTAACCCGCTGAATGCTAGTTTTACGATGAGAATTTTGCTTACTGGTTCCACTCTTCGAAGCAAGTTTTTCATTGCTCATTTTTATACATTGAGCTTCGTAGAAAAGCATATACCTATAAAAGTACATATGTACGTATATATATTGTAACATTCATCTTTAGGTAGATGTACAGACGTATATAGTCCTTGAGTAAGATTCCTAACCAAAAGTCACAGGTCCTTAGGATAATATCTTCGAAAGTCCCGAC
***************************************************.......(((((.....)))))((((((((....))))))))...(((((.((((............(((((......))))))))).)))))...................*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR902008
ovaries
....................................................................................................................................................................TAGATGTACAGACGTATATAGTCCT............................................................. 25 0 1 2.00 2 2 0 0 0 0 0
.....CCCGCTGGATGCTAGTTTTAC................................................................................................................................................................................................................................ 21 1 1 2.00 2 0 0 0 0 2 0
................................................................................................................................................................TAGGTAGATGTACAGACGTAT..................................................................... 21 0 1 2.00 2 0 1 0 1 0 0
......................................................CTTCGAAACAAGTTTTTCATTGCTCAT......................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................TTAGGTAGATGTACAGACGTAT..................................................................... 22 0 1 1.00 1 0 0 0 0 0 1
...................................................................TTTTCATTGCTCATTTTTATACAT............................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0
..........TGAATGCTAGTTTTACGATGAGAAT....................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................CTTTAGGTAGATGTACAGACGTA...................................................................... 23 0 1 1.00 1 0 0 0 1 0 0
..............................................................................................................................................................TTTAGGTAGATGTACAGACGT....................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
..........TGAATGCTAGTTTTACG............................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................CTTTAGGTAGATGTACAGACGTATAT................................................................... 26 0 1 1.00 1 0 0 1 0 0 0
...........GAATGCTAGTTTTACGATGA........................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................TGAGTAAGATTCCTAACCAAAAGTC.................................... 25 0 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................TCATTTTTAGGTAGATGTT.............................................................................. 19 2 7 0.14 1 0 1 0 0 0 0
.........................................................................................................................................................................................................CGAACCAAACGTCACAAGTC............................. 20 3 17 0.06 1 0 1 0 0 0 0
.................................................................................................TCGTTGAAAAGCATA.......................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:2456680-2456929 + dsi_7043 GGATTGGGCGACTTA---CGATCAAAATGCTA-CTCTTAAAACGAATGACCAAGGTGAGAA-GCTTCGTTCAAAAAGTAACGAGTA-------------------AAAATATGTAACTCG---------AAGCATCTTTTCGTATATGGATAT-----TTTCATGTATACATGCATATATATAA-------------------------------------------------------CATTGTAAGT---AGAAATCCATCTACATGTCTGCAT--AT----------------ATCAGGAACTCATTCTAAGGATTGGTTTTCAGTGTCCAGGAATCCT----------------------------------------------ATTATAGAAGCTTTCAGGGCTG
droSec2 scaffold_26:126576-126830 + GGATTGGGCGACTTA---CGATCAAAATGCTA-CTCTTAAAACGAATGACCAAGGTGAGAA-GCTTCGTTCAAAAAGTAACGAGTAAAATA--------------AAAATATGTAACTCG---------AAGCATTTTTTCGTATATGGATAT-----TTTCATGTATACATGCATATATATAA-------------------------------------------------------CATTGTAAGT---AGAAATCCATCTACATGTCTGCAT--AT----------------ATCAGGAATTCATTCTAAGGATTGGTTTTCAGTGTTCAGGAATCCT----------------------------------------------ATTATAGAAGCTTTCAGGGCTG
dm3 chr2R:1496945-1497198 + GGATTGGGCGACTTA---CGATCAGAATGCTA-CTCTTAAAACGAATGACCAAGGTGAGAAAGCTTCGTTCAAAAAGTAACCAGTA-------------------AAAATATGTAACTGT-----AT--AAGCATTTTTTCGTATATGAATAT-----TTTCATGTATACAA---TATA---------------------TTTACATATATATATGT-A------TATAA---------CATTGTAATT---AGAAATGCATCTACATGTCTGCAT--AT----------------ATCAGGAACTCATTCTAAGGATTGGCTTTCAGTTCCCAGGAACCCT----------------------------------------------ATTATATA--------------
droEre2 scaffold_4929:20885632-20885892 - der_1379 GGATTGGGCGACTTA---CGATCAGAACGCTA-CTCTTAAAACTAATGGCCAAGGTGAGCA-GCTTCGCTAAAAAAGTAAAGAGTA-------------------AAAAAATGTATAAGT-----ATCAATGAATATTATTATAAATGGATATATCATATTCATGTCTACAA------AAATA------------------------------------------TCTTA---------CATTGTAAGAGAGAGAGATGCTTTAACATGTCTGCAT--AT----------------ATCAGGAACTCATTTTAAGGATTTGCTTACAGTTCCCAGGAATCCTATATCTTATACCTCAAAATTTGC---------------------------------------------
droYak3 v2_chr2L_random_001:393278-393554 + GGATTGGGCGACTTA---CGATCAGAATGCTA-CTCTT------AATGGCCAAGGTGAGGA-GCTCCGCTAAAAAACTACAGATTACAAAATAC----------------ATGT--CTTG---------A---TTAGTTTTATATATGGGTATATCATATTCATGTATACATAT-----TATCC-------------------------------------------------------TATTGTAAGT---AGAGATGCTTCTACATGTCTGCATATAT----------------GTCAGGAACTCAATCTAAGGATTTGCTTACTGTTCC---------TATATATTATACCTCAAAATTTACGAAATTAATTACTAAAGGAGTATATTATA---GCCTTAAGGGCT-
droEug1 scf7180000409493:1832-1987 - GAACAAAGGAAACAATTTCACTTAAGAATTCG-AAATTGTATAATATAGTTGAGGTAAGTA-TT--------------------------------------------------------------------------TATATAGGTACATAT-----GTTTATGTATGCATGTACAAATATAA-------------------------------------------------------TGTGTCACGG---TGGATTCTATCTACATAT--GTTT--AT----------------TTTAATACTTCATACTTAG-----------------------------------------------------------------------------------------------
droBia1 scf7180000299500:26012-26111 + ATAAATAAATATATA---TAAATAAA------------------------------------------------------------------------------------------------------------------TATATATAAATAT-----ATATATATATAAATATATATATAAAT-------------------------------------------------------AAATATATAT---ATAAATAAATATAT------------------ATATATATATATAT----------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415754:2286-2443 + AAAAATATT---------------------------------------------GTAACCA-G-----------------------------------------------------TGCG---------AGGGAGATATATGTATGTAGATAT-----TTTGATTGGTATATTTTGATAGGTAAAAATATACACAACAAAATTGCATTTATACTTTTTGGAAATCTTTAT---------AGATGTGGGCGCAGGAGA------------------------------------------------------------------------------------C----------------------------------------------ATTTTAAAATCGTTAATGGGCG
droEle1 scf7180000488719:9126-9185 + GGATTGGGCGACCTA---CGATCAAAATGCCA-TTGTTGGAAGTATTGGCCAAGGTGAGAT-GCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779685:16670-16801 - AAAAATTGATAATTA---TACATATA---TAT-ATATTA-----GGTGA-------------------------------------------------------------------TTAG---------TATT-----AGTTTTTCTGAATAT-----GTATATGTATATATGTATATATATA------------------------------------------TATTATATCATATA-------------------------TC------------------ATATATATATATATAGAAA-----------------------------------------------------------------AACTAATACTAA------------------------------
droFic1 scf7180000449423:39760-39834 + AGGTTGGGTGACCTA---CGACCAGAAAGCTT-TTCTTGGATGCAAAAGCCGAGGTGAGAA-ATTATCTACAATAAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302222:1220-1280 + CGATTGGGTCACCTA---CGATCCGAATTTCA-CTATCGAAAGAAATGGCAAAGGTAAGCA-ACTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13258:895273-895286 + TGACTGGGCGGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395147:5287-5302 - AAACTGGGCGGATTA---C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 4_group4:6560978-6561035 + AGATTGGGGAAGCTA---CGATCAGAATGCAA-CCCTTGGAACC---AGCAGAGGTGAGCA-TCCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_26:105419-105518 - ATTTC------------------------------------------------------------------------------------------------------------TCACTCG---------AATTTTGTCGACTTACACACATAT-----GTACATGTATGCATGCATGTATGTAT-------------------------------------------------------GTATGTATGT---ATGTACATATGTAC------------------ATATTTACATATGT----------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004963:3319766-3319887 - GGGC-----GAACAA---ACATTAAAACGTTAAATATT------GATAGCCAGAGTCAGTC-T---------------A-TAAATA-------------------AAAAAAT-----------------------A----CATACATAAACAT-----ACTTATATATATATATATATA----------------------------------------------------------------------------TCTATATATAT------------------ATCTATATATAGAA----------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13050:1114235-1114368 + ATAAAAA---------------------------------------------AAGTAAGAG-GTTCTAGTCGGGAGCTCCCGACTAGGAGATACCCTGAACCCTC--------TTCTTCAAACAT-----CAAATGCATATATATATATATAT-----ATATATGTATATATAT----------------------------------------------------------------------------------ATATATATAT------------------ATATATATATATAT----------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:12048817-12048958 + TCAAAAT--GACAAA---CGAACGA-ATGCGA-ACCGAAG--------GCAGAG------A-GATAATGAAAAACGCGATCGGTTACGGAAAGC----------------GAGT----------------AATATACTTACATATATGCATAT-----TTTCATATTTATATTTCTATATGTGT------------------------------------------------------A-------------------------AG------------------ATTTATTTGTATGT----------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:2029475-2029563 - AACACGT----------------------------------------------------------------------------------------------------------------------------------CTGTGTATATATATAT-----ATATATGTATATATATATATATATGT-------------------------------------------------------CTATGTCTAT---ATCTA------------T--GTCT--ATATCTATGTCTATATTTAT----------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGATTGGGCGACTTA---CGATCAAAATGCTA-CTCTTAAAACGAATGACCAAGGTGAGAA-GCTTCGTTCAAAAAGTAACGAGTA-------------------AAAATATGTAACTCG---------AAGCATCTTTTCGTATATGGATAT-----TTTCATGTATACATGCATATATATAA-------------------------------------------------------CATTGTAAGT---AGAAATCCATCTACATGTCTGCAT--AT----------------ATCAGGAACTCATTCTAAGGATTGGTTTTCAGTGTCCAGGAATCCT----------------------------------------------ATTATAGAAGCTTTCAGGGCTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................T----------------ATCAGGAACTCATTCTAAGGATTGGT........................................................................................27124.0024000000213000000000
....................................................................................................................................................................................................................................................................................................................TTCTAAGGATTGGTTTTCAGTGTC..............................................................................24110.001000000091000000000
....................................................................................................................................................................................................................................................................................................................................TCAGTGTCCAGGAATCCT----------------------------------------------ATTATAGA..............2619.00900000072000000000
.................................................................................................................................................................................................................................................................................................................TCATTCTAAGGATTGGTTTTCAGTGTC..............................................................................2716.00600000050100000000
.............................................................................................................................................................................................................................................................................TCTGCAT--AT----------------ATCAGGAACTCATTCTA.................................................................................................2616.00600000000000024000
...................................................................................................................................................................................................................................................................................T--AT----------------ATCAGGAACTCATTCTAAGGATTGGT........................................................................................2915.00500000050000000000
........................................................................................................................................................................................................................................................................................................................................TGTCCAGGAATCCT----------------------------------------------ATTATAGAAGCTT.........2715.00500000021002000000
........................................................................................................................................................................................................................................................................................................................................TGTCCAGGAATCCT----------------------------------------------ATTATAGAAGCT..........2615.00500000040001000000
..........................................................................................................................................................................................................................................................................................................................................TCCAGGAATCCT----------------------------------------------ATTATAGAAGCTT.........2514.00400000001003000000
.........................................................................................................................................................................................................................................................................................................TCAGGAACTCATTCTAAGGATTGGT........................................................................................2514.00400000031000000000
..........................................................................................................................................................................................................................................................................................................................................TCCAGGAATCCT----------------------------------------------ATTATAGAAGCTTT........2614.00400000020001001000
......................................................................................................................................................................................................................................................................................AT----------------ATCAGGAACTCATTCTAAGGATTGGT........................................................................................2814.00400000040000000000
...................................................................................................................................................................................................................................................................................T--AT----------------ATCAGGAACTCATTCTAAGGAT............................................................................................2514.00400000000013000000
...............................................................................................................................................................................................................................................................................TGCAT--AT----------------ATCAGGAACTCATTCTAAGGA.............................................................................................2813.00300000021000000000
.....................................................................................................................................................................................................................................................................TCTACATGTCTGCAT--AT----------------ATCAGGAACTCA......................................................................................................2913.00300000020100000000
.................................................................................................................................................................................................................................................................................CAT--AT----------------ATCAGGAACTCATTCTAAGGA.............................................................................................2613.00300000020000010000
...............................................................................................................................................................................................................................................................................TGCAT--AT----------------ATCAGGAACTCATTCTAAGGAT............................................................................................2913.00300000012000000000
................................................................................................................................................................................................................................................................................................................CTCATTCTAAGGATTGGTTTTCAGTGTC..............................................................................2813.00300000030000000000
...............................................................................................................................................................................................................................................................................TGCAT--AT----------------ATCAGGAACTCATTCTA.................................................................................................2413.00300000000000012000
.......................................................................................................................................................................................................................................................................................T----------------ATCAGGAACTCATTCTAAGGATTGGTT.......................................................................................2813.00300000012000000000
.......................................................................................................................................................................................................................................................................TACATGTCTGCAT--AT----------------ATCAGGAACTC.......................................................................................................2613.00300000020100000000
....................................................................................................................................................................................................................................................TAAGT---AGAAATCCATCTACATGTCTGCA.......................................................................................................................................2812.00200000020000000000
................................................................................................................................................................................................................................................................................................................CTCATTCTAAGGATTGGTTTTCAGTG................................................................................2612.00200000010001000000
...................................................................................................................................................................................................................................................................................................................................TTCAGTGTCCAGGAATCCT----------------------------------------------ATTATAGA..............2712.00200000011000000000
...............................................................................................................TGTAACTCG---------AAGCATCTTTTCGTATA........................................................................................................................................................................................................................................................................2612.00200000000110000000
.........................................................................................................................................................................................................................................................................................................................AGGATTGGTTTTCAGTGTCCAGGAA........................................................................2512.00200000001001000000
.............................................................................................................................................................................................................................................................................................................................................AGGAATCCT----------------------------------------------ATTATAGAAGCTTTCAGGGC..2912.00200000020000000000
...................................................................................................................................................................................................................................................................................T--AT----------------ATCAGGAACTCATTCTAAGGATTGGTT.......................................................................................3012.00200000020000000000
.............................................................................................................................................................................................................................................................................TCTGCAT--AT----------------ATCAGGAACTCATT....................................................................................................2312.00200000000000020000
.....................................................................................................................................................................................................................................................AAGT---AGAAATCCATCTACATGTCTGCA.......................................................................................................................................2712.00200000020000000000
.......................................................................................................................................................................................................................................................................................T----------------ATCAGGAACTCATTCTAAGGATTGG.........................................................................................2612.00200000011000000000
........................................................................................................................................................................................................................................................................................................ATCAGGAACTCATTCTAAGGATTGGT........................................................................................2612.00200000000100010000
.................................................................................................................................................................................................................................................................................................................TCATTCTAAGGATTGGTTTTCAGT.................................................................................2412.00200000020000000000
.............................................................................................................................................................................................................................................................................TCTGCAT--AT----------------ATCAGGAACTCATTCTAA................................................................................................2712.00200000000000020000
........................................................................................................................................................................................................................................................................................................ATCAGGAACTCATTCTAAGGATTGGTT.......................................................................................2712.00200000010001000000
..................................................................................................................................................................................................................................................................................................................................TTTCAGTGTCCAGGAATCCT----------------------------------------------ATTATAGA..............2812.00200000011000000000
.........................................................................................................................................................................................................................................................................................................TCAGGAACTCATTCTAAGGATTGGTT.......................................................................................2612.00200000020000000000
..............................TA-CTCTTAAAACGAATGACCAAGGTGAGA..............................................................................................................................................................................................................................................................................................................................................................2912.00200000010100000000
.........................AATGCTA-CTCTTAAAACGAATGACC.......................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
...............................................................................................................................................................................................................................................................................TGCAT--AT----------------ATCAGGAACTCATT....................................................................................................2111.00100000010000000000
..........ACTTA---CGATCAAAATGCTA-CTC......................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
...........................TGCTA-CTCTTAAAACGAATGACCAAGGT..................................................................................................................................................................................................................................................................................................................................................................2811.00100000000010000000
..........................................................................................................................................................................................................................................................................................................CAGGAACTCATTCTAAGGAT............................................................................................2011.00101000000000000000
........CGACTTA---CGATCAAAATGC............................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TATAGAAGCTTTCAGGGCT.1911.00100000000001000000
..................................................................................................................................................................................................................................................................................AT--AT----------------ATCAGGAACTCATTCTAAGGAT............................................................................................2611.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................TTCAGTGTCCAGGAATCCT----------------------------------------------AT....................2111.00100000010000000000
........................................AACGAATGACCAAGGTGAGAA-GCTTC.......................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
....................................................................................................................CTCG---------AAGCATCTTTTCGTAT.........................................................................................................................................................................................................................................................................2011.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................TCAGTGTCCAGGAATCCT----------------------------------------------ATTATAGAA.............2711.00100000001000000000
.......................................................................................................................................................................................................................................................................TACATGTCTGCAT--AT----------------ATC...............................................................................................................1811.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................ATCCT----------------------------------------------ATTATAGAAGCTT.........1811.00100000000001000000
..............................................................................................................................................................................................................................................................................................................AACTCATTCTAAGGATTGGTTTTCAGT.................................................................................2711.00100010000000000000
....................................................................................................................................................................................................................................................................................................................TTCTAAGGATTGGTTTTCAGTGTCC.............................................................................2511.00100000000001000000
...................................................................................................................................................................................................................................................................................T--AT----------------ATCAGGAACTCATTCTAAGGA.............................................................................................2411.00100000010000000000
.................................................................................................................................................................................................................................................................................................................TCATTCTAAGGATTGGTTTTCAGTGT...............................................................................2611.00100000001000000000
...........................................................................................................................................................................................................................................................................TGTCTGCAT--AT----------------ATCAGGAACTCATT....................................................................................................2511.00100000010000000000
........................................................................................................................................................T-----TTTCATGTATACATGCAT..........................................................................................................................................................................................................................................1911.00100010000000000000
...................................................................................................................................................................................................................................................................................T--AT----------------ATCAGGAACTCATTCTAAGGATTGG.........................................................................................2811.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................TAAGGATTGGTTTTCAGTGTCCAGGAA........................................................................2711.00100000001000000000
...................................................................................................................................................................................................................................................................................................................ATTCTAAGGATTGGTTTTCAGG.................................................................................2211.00101000000000000000
...................................................................................GTA-------------------AAAATATGTAACTCG---------AAGCATC..................................................................................................................................................................................................................................................................................2511.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................ATTATAGAAGCTTTCAGGG...1911.00100010000000000000
............................................................................................................................................................................................................................................................................................................................ATTGGTTTTCAGTGTCCAGGAA........................................................................2211.00100000000001000000
......................................................................................................................................................................................................................................................................................AT----------------ATCAGGAACTCATTCTAAGGATTGGTT.......................................................................................2911.00100000010000000000
..............................................................................................................................................................................................................................................................................CTGCAT--AT----------------ATCAGGAACTCATTCTAAGGAA............................................................................................3011.00100000010000000000
....................................TTAAAACGAATGACCAAG....................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.........GACTTA---CGATCAAAATGCTA-CTCT.....................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.......................................................................................................................................................................................................................................................................................T----------------ATCAGGAACTCATTCTAAGGAT............................................................................................2311.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................TTTTCAGTGTCCAGGAATCCT----------------------------------------------ATTATA................2711.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................CAGGAATCCT----------------------------------------------ATTATAGAAGCTTTCAGG....2811.00100000001000000000
.................................................................................................................................................................CATGTATACATGCATATATATAA-------------------------------------------------------CATTGTA....................................................................................................................................................................3011.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................TTTCAGTGTCCAGGAATCCT----------------------------------------------......................2011.00100000100000000000
..................................................................................................................................................................................................................................................................................................................................TTTCAGTGTCCAGGAATC......................................................................1811.00100000000001000000
.................................................................................................................................................................................................................................................................................CAT--AT----------------ATCAGGAACTCATTCTAAGGAT............................................................................................2711.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................TCCT----------------------------------------------ATTATAGAAGCTTTCAGG....2211.00100000010000000000
......................................................................................................................................................................................................................................................................................................................CTAAGGATTGGTTTTCAGTGTC..............................................................................2211.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................TGGTTTTCAGTGTCCAGGA.........................................................................1911.00100000000001000000
...............................................................................................................................................................................................................................................................................TGCAT--AT----------------ATCAGGAACTC.......................................................................................................1811.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................TTGGTTTTCAGTGTCCAGGAATCCT----------------------------------------------A.....................2611.00100000010000000000
.....................................................................................................................................ATCTTTTCGTATATGGATAT-----TTTCAT......................................................................................................................................................................................................................................................2611.00100010000000000000
..................................................................................................................................................................................................................................................................................................................CATTCTAAGGATTGGTTTTCAGTGTC..............................................................................2611.00100000010000000000
......................................................................................................................................................................................................................................................................CTACATGTCTGCAT--AT----------------ATCAGGAACTCA......................................................................................................2811.00100000010000000000
........................................................................................................................................................................................................................................................................................................................AAGGATTGGTTTTCAGTGTC..............................................................................2011.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................TTTTCAGTGTCCAGGAATCCT----------------------------------------------ATTAT.................2611.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................TGGTTTTCAGTGTCCAG...........................................................................1711.00100000000001000000
......................................................................................................................................................................................................................................................................................AT----------------ATCAGGAACTCATTCTAAGGAT............................................................................................2411.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................TGGTTTTCAGTGTCCAGG..........................................................................1811.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................ATCCT----------------------------------------------ATTATAGAAGCTTTCAGGGCT.2611.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................TCCAGGAATCCT----------------------------------------------ATTATAGAA.............2111.00100000000001000000
...................................................................................................................................................................................................................................................................................................................ATTCTAAGGATTGGTTTTCAGTGTC..............................................................................2511.00100000010000000000
..................................................................................................................................................................................................................................................................................AT--AT----------------ATCAGGAACTCATTCTAAGGATTGGT........................................................................................3011.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................TGTCCAGGAATCCT----------------------------------------------ATTATAGAAGC...........2511.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................TCAGTGTCCAGGAATCC.....................................................................1711.00100000000001000000
....................................................................................................................................................................................................................................................................................................................TTCTAAGGATTGGTTTTCAGTGTCCAGGA.........................................................................2911.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................TCAGTGTCCAGGAATCCT----------------------------------------------ATTATA................2411.00100000000001000000
...................................................................................................................................................................................................................................................................................................................ATTCTAAGGATTGGTTTTC....................................................................................1911.00100100000000000000
..............................................................................................................ATGTAACTCG---------AAGCATCTTTT..............................................................................................................................................................................................................................................................................2111.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................TTCAGTGTCCAGGAATCCT----------------------------------------------ATTATAGAA.............2811.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................ATCCT----------------------------------------------ATTATAGAAGCTTTCAGGGC..2511.00100000010000000000
.............TA---CGATCAAAATGCTA-CTCTTAAAACGAA............................................................................................................................................................................................................................................................................................................................................................................2911.00100000000010000000
................................................................................................................................................................................................................................................................................GCAT--AT----------------ATCAGGAACTCATTCTAAGGAT............................................................................................2811.00100000000000001000
.............................................................................................................TATGTAACTCG---------AAGCATCTTTTCGTA..........................................................................................................................................................................................................................................................................2611.00100000000001000000
...........................................GAATGACCAAGGTGAGAA-GCTTCGTT....................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
........................AAATGCTA-CTCTTAAA.................................................................................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
droSec2
GGATTGGGCGACTTA---CGATCAAAATGCTA-CTCTTAAAACGAATGACCAAGGTGAGAA-GCTTCGTTCAAAAAGTAACGAGTAAAATA--------------AAAATATGTAACTCG---------AAGCATTTTTTCGTATATGGATAT-----TTTCATGTATACATGCATATATATAA-------------------------------------------------------CATTGTAAGT---AGAAATCCATCTACATGTCTGCAT--AT----------------ATCAGGAATTCATTCTAAGGATTGGTTTTCAGTGTTCAGGAATCCT----------------------------------------------ATTATAGAAGCTTTCAGGGCTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................GACCAAGGTGAGAA-GCTTCGTTCAAAA...............................................................................................................................................................................................................................................................................................................................................2712.0022000
............................................................A-GCTTCGTTCAAAAAGTAACGAGT.....................................................................................................................................................................................................................................................................................................................................2412.0020110
...............................................GACCAAGGTGAGAA-GCTTCGTT....................................................................................................................................................................................................................................................................................................................................................2212.0021100
...............................................................................................................................................................................................................................................CATTGTAAGT---AGAAATCCATC...................................................................................................................................................2111.0011000
........................................................GAGAA-GCTTCGTTCAAAAAGTAACGAGT.....................................................................................................................................................................................................................................................................................................................................2811.0010100
....................................................................................................................................................................................................................................................................................................................TTCTAAGGATTGGTTTTCAGT.................................................................................2111.0010010
...............................................GACCAAGGTGAGAA-GCTTC.......................................................................................................................................................................................................................................................................................................................................................1911.0011000
..ATTGGGCGACTTA---CGATCAAAAT..............................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
....................................................AGGTGAGAA-GCTTCGTTCAAA................................................................................................................................................................................................................................................................................................................................................2111.0010100
.....................................................................................................................................................................................................................................................................................................................................................T----------------------------------------------ATTATAGAAGCTTTCAGGGC..2111.0010100
........................................................................................................................................................................................................................................................................................................ATCAGGAATTCATTCTAAGGATTGGT........................................................................................2611.0010100
......................................................................................................................................................................................................................................................................CTACATGTCTGCAT--AT----------------ATCAGGA...........................................................................................................2311.0011000
...................................................................................................................................................................................................................................................GTAAGT---AGAAATCCATCTA.................................................................................................................................................1911.0011000
.........................................ACGAATGACCAAGGTGAGAA-GCTT........................................................................................................................................................................................................................................................................................................................................................2411.0010100
.......GCGACTTA---CGATCAAAATGCT...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.........GACTTA---CGATCAAAATGCT...........................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
...................................................................................................................................................................................................................................................................................................................ATTCTAAGGATTGGTTTTCAGTGTTC.............................................................................2611.0010010
......................................................................................................................................................................................................................................................................................................................CTAAGGATTGGTTTTCAGTGTTCAGG..........................................................................2611.0010100
.........................................................................................TA--------------AAAATATGTAACTCG---------AAG......................................................................................................................................................................................................................................................................................2011.0011000
........................................................................................................................................................................................................................................................................................................................................TGTTCAGGAATCCT----------------------------------------------ATTATAGAAG............2411.0011000
.....................................................................................................................................................................................................................................................................................................................TCTAAGGATTGGTTTTCAGT.................................................................................2011.0010100
............................................................................................................................................................................................................................................................................................................................ATTGGTTTTCAGTGTTCAGGA.........................................................................2111.0010100
............................................................................................................................................................................................................................................................................................................................ATTGGTTTTCAGTGTTCAGG..........................................................................2011.0010100
...................................................................................................................................................................................................................................................................................................................ATTCTAAGGATTGGTTTTCAGT.................................................................................2211.0010100
.............................................ATGACCAAGGTGAGAA-GCTTCGT.....................................................................................................................................................................................................................................................................................................................................................2311.0010100
.....GGGCGACTTA---CGATCAAAATG.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
................................................................................................................................................................................ATATATAA-------------------------------------------------------CATTGTAAGT---AGA...........................................................................................................................................................2111.0010010
................................................................................................................................................................................ATATATAA-------------------------------------------------------CATTGTAAGT---..............................................................................................................................................................1811.0010010
dm3
GGATTGGGCGACTTA---CGATCAGAATGCTA-CTCTTAAAACGAATGACCAAGGTGAGAAAGCTTCGTTCAAAAAGTAACCAGTA-------------------AAAATATGTAACTGT-----AT--AAGCATTTTTTCGTATATGAATAT-----TTTCATGTATACAA---TATA---------------------TTTACATATATATATGT-A------TATAA---------CATTGTAATT---AGAAATGCATCTACATGTCTGCAT--AT----------------ATCAGGAACTCATTCTAAGGATTGGCTTTCAGTTCCCAGGAACCCT----------------------------------------------ATTATATA--------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...............................................GACCAAGGTGAGAAAGCTT........................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ATTGGGCGACTTA---CGATCAGAATGC............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................................................................................................................ATTCTAAGGATTGGCTTTC....................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TCAGGAACTCATTCTAAGGATTGGCT.......................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CTAAGGATTGGCTTTCAGT.................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........ACTTA---CGATCAGAATGCTA-CT.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................................................TTGTAATT---AGAAATGCATCTACATG.............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................T--AT----------------ATCAGGAACTCATTCTAAGGATT...........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................TAAAACGAATGACCAAGGGT.................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TTAAAACGAATGACCAAGGGT.................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................ATATATATGT-A------TATAA---------CATT.......................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TTCAGTTCCCAGGAACCTC----------------------------------------------......................1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GGATTGGGCGACTTA---CGATCAGAACGCTA-CTCTTAAAACTAATGGCCAAGGTGAGCA-GCTTCGCTAAAAAAGTAAAGAGTA-------------------AAAAAATGTATAAGT-----ATCAATGAATATTATTATAAATGGATATATCATATTCATGTCTACAA------AAATA------------------------------------------TCTTA---------CATTGTAAGAGAGAGAGATGCTTTAACATGTCTGCAT--AT----------------ATCAGGAACTCATTTTAAGGATTTGCTTACAGTTCCCAGGAATCCTATATCTTATACCTCAAAATTTGC---------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................A---------CATTGTAAGAGAGAGAG..........................................................................................................................................................1813.0030000030
............................................AATGGCCAAGGTGAGCA-GCTTCGC.....................................................................................................................................................................................................................................................................................................................................................2413.0030000030
........................................................................................................................................................................................................................................................................................................ATCAGGAACTCATTTTAAGGAT............................................................................................2213.0030000120
....................................................................................................................................................................................................................................TA---------CATTGTAAGAGAGAGAGATGCT.....................................................................................................................................................2412.0022000000
..ATTGGGCGACTTA---CGATCA..................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000200
...............................................GGCCAAGGTGAGCA-GCTTCG......................................................................................................................................................................................................................................................................................................................................................2012.0021000100
.........................................ACTAATGGCCAAGGTGAGCA-............................................................................................................................................................................................................................................................................................................................................................2012.0020000200
..............................................................................................................................................................................................................................................................................................................AACTCATTTTAAGGATTTGCTTACA...................................................................................2511.0010000010
............................................AATGGCCAAGGTGAGCA-GCT.........................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..............................................................................................................................................................................................................................................................................................................................TTGCTTACAGTTCCCAGGAATCCTA...................................................................2511.0011000000
..........................................CTAATGGCCAAGGTGAGCA-GCTTCGC.....................................................................................................................................................................................................................................................................................................................................................2611.0010000010
............................................AATGGCCAAGGTGAGCA-GCTTC.......................................................................................................................................................................................................................................................................................................................................................2211.0010000100
...TTGGGCGACTTA---CGATCAGAA...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
........................................AACTAATGGCCAAGGTGAGCA-GCTTC.......................................................................................................................................................................................................................................................................................................................................................2611.0010001000
......................................AAAACTAATGGCCAAGGTGAGCA-GC..........................................................................................................................................................................................................................................................................................................................................................2511.0010000010
.............TA---CGATCAGAACGCTA-CTCT.....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
...............................................................................................................................................................................................................................................................................................................................TGCTTACAGTTCCCAGGAATCCTATA.................................................................2611.0011000000
..................................................................................................................................................................................................................................CTTA---------CATTGTAAGAGAGAGAG..........................................................................................................................................................2111.0011000000
.........GACTTA---CGATCAGAACGCTA-CTCTT....................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.........GACTTA---CGATCAGAACGCT...........................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
............................................AATGGCCAAGGTGAGCA-GCTT........................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.............TA---CGATCAGAACGCTA-CTCTTAAAAC...............................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
...................................................AAGGTGAGCA-GCTTCGCTA...................................................................................................................................................................................................................................................................................................................................................1911.0010000100
............TTA---CGATCAGAACGCTA-CTCT.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...TTGGGCGACTTA---CGATCAGAACGCT...........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
............................................AATGGCCAAGGTGAGCA-GC..........................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.........................................................................................................................................................................................................................................................GAGAGAGATGCTTTAACATGTCTGC........................................................................................................................................2511.0010000100
......................................................................................................................................................................................................................................................................TAACATGTCTGCAT--AT----------------ATCAGGAACT........................................................................................................2611.0011000000
..........................................................................................................................................ATTATAAATGGATATATCAT............................................................................................................................................................................................................................................................2011.0010000100
...................................................................................................................................................................................................................................................................................................................................TACAGTTCCCAGGAATCCTATATCT..............................................................2511.0011000000
.......................................AAACTAATGGCCAAGGTGAGCA-GC..........................................................................................................................................................................................................................................................................................................................................................2411.0010000100
..................................................CAAGGTGAGCA-GCTTCGCTAA..................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.....GGGCGACTTA---CGATCAGAACGC............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..................................................................................................................................................................................................................................................................................................................CATTTTAAGGATTTGCTTACA...................................................................................2111.0010000010
.........GACTTA---CGATCAGAACGCTA-CTCT.....................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
..........................................................GCA-GCTTCGCTAAAAAAGTAAAGA.......................................................................................................................................................................................................................................................................................................................................2411.0010000010
..................................................................................................................................................................................................................................................................................AT--AT----------------ATCAGGAACTCATTTTAAGG..............................................................................................2411.0010000010
..................................................................................................................................................................................................................................CTTA---------CATTGTAAGAGAGAGA...........................................................................................................................................................2011.0010000100
.......................................................................................................................................................................................................................................................GAGAGAGAGATGCTTTAACATGTCTGC........................................................................................................................................2711.0010000010
.......................................................................................................................................ATTATTATAAATGGATATATCAT............................................................................................................................................................................................................................................................2311.0010000100
..................................................................................................................................................................................................................................................................................................................................TTACAGTTCCCAGGAATCCTAT..................................................................2211.0010000010
.........GACTTA---CGATCAGAACGCTA-CT.......................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
GGATTGGGCGACTTA---CGATCAGAA...............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001
.............TA---CGATCAGAACGCTA-CTCTTA...................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...........CTTA---CGATCAGAACGCTA-CT.......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.........................................................................................................................................................................................................................................................................CATGTCTGCAT--AT----------------ATCAGGAACTC.......................................................................................................2411.0010100000
..........................................................................AAGTAAAGAGTA-------------------AAAAAATGTATA.....................................................................................................................................................................................................................................................................................................2411.0010000100
droYak3
GGATTGGGCGACTTA---CGATCAGAATGCTA-CTCTT------AATGGCCAAGGTGAGGA-GCTCCGCTAAAAAACTACAGATTACAAAATAC----------------ATGT--CTTG---------A---TTAGTTTTATATATGGGTATATCATATTCATGTATACATAT-----TATCC-------------------------------------------------------TATTGTAAGT---AGAGATGCTTCTACATGTCTGCATATAT----------------GTCAGGAACTCAATCTAAGGATTTGCTTACTGTTCC---------TATATATTATACCTCAAAATTTACGAAATTAATTACTAAAGGAGTATATTATA---GCCTTAAGGGCT-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................TTG---------A---TTAGTTTTATATATGGGT...................................................................................................................................................................................................................................................................2215.00503000020000
......................................................................................................................TG---------A---TTAGTTTTATATATGGGT...................................................................................................................................................................................................................................................................2114.00400000040000
....................................................................................................................CTTG---------A---TTAGTTTTATATATGGGT...................................................................................................................................................................................................................................................................2312.00201000010000
................................................................................................................GT--CTTG---------A---TTAGTTTTATATATGGGT...................................................................................................................................................................................................................................................................2512.00200000020000
................................................................................................................................................................................................................................................ATTGTAAGT---AGAGATGCTTCT..................................................................................................................................................2112.00201000010000
........................................................................................................................................................................................................................................................................................................................................................................TTTACGAAATTAATTACTAAAGGAG.........................2522.00440000000000
.................................................................................................................................A---TTAGTTTTATATATGGGT...................................................................................................................................................................................................................................................................1912.00200000020000
.......................................................................................................................G---------A---TTAGTTTTATATATGGGT...................................................................................................................................................................................................................................................................2012.00200000020000
...........CTTA---CGATCAGAATGCTA-CTCTT------AAT...........................................................................................................................................................................................................................................................................................................................................................................2621.00200000020000
............................................AATGGCCAAGGTGAGGA-GCTCCGCT....................................................................................................................................................................................................................................................................................................................................................2521.00210000010000
........................................................................................................................................................................................................................................................................ACATGTCTGCATATAT----------------GTCAGG............................................................................................................2211.00101000000000
............................................................................................................................................................................................................................................................AGAGATGCTTCTACATGTCT..........................................................................................................................................2011.00101000000000
..ATTGGGCGACTTA---CGATCAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................2321.00200000020000
.GATTGGGCGACTTA---CGATCAGAATGCT...........................................................................................................................................................................................................................................................................................................................................................................................2721.00200000020000
............................................................................................................................................................................................................................................................................GTCTGCATATAT----------------GTCAGGA...........................................................................................................1911.00101000000000
..............................................................................................................................................................................................................................................................................................................AACTCAATCTAAGGATTTGCTTACT...................................................................................2521.00202000000000
............TTA---CGATCAGAATGCTA-CTCTT------AAT...........................................................................................................................................................................................................................................................................................................................................................................2521.00200000020000
....................................................................................................................................................................................................................................................................................ATAT----------------GTCAGGAACTCAATCTAAGGAT............................................................................................2611.00110000000000
..........................................................................................................................................................................................................................................................................ATGTCTGCATATAT----------------GTCAGGA...........................................................................................................2111.00101000000000
.........GACTTA---CGATCAGAATGCTA-CTCTT------AAT...........................................................................................................................................................................................................................................................................................................................................................................2821.00200000020000
.......................................................................................................................................................ATATCATATTCATGTATACATA.............................................................................................................................................................................................................................................2211.00101000000000
...........CTTA---CGATCAGAATGCTA-CTCTT------..............................................................................................................................................................................................................................................................................................................................................................................2321.00201000010000
.......................................................................................................................................................................................................................................................................................T----------------GTCAGGAACTCAATCTAAG...............................................................................................2011.00100000010000
..........................................................................................................................................................................ATAT-----TATCC-------------------------------------------------------TATTGTAAGT---AGAG..........................................................................................................................................................2311.00100000010000
....................................................................................................................................................................GTATACATAT-----TATCC-------------------------------------------------------TATTGTAAGT---AGAGA.........................................................................................................................................................3011.00100000010000
..................................................................................................................................................................................................................................................................................ATATAT----------------GTCAGGAACTCAAT....................................................................................................2011.00101000000000
.....................................................................................................................TTG---------A---TTAGTTTTATATATGGGTAT.................................................................................................................................................................................................................................................................2411.00100000010000
.............................................................................................................................................................................................................................................................................TCTGCATATAT----------------GTCAGGAACTCAAT....................................................................................................2511.00101000000000
..............................................................................................................................................................................................................................................................................................................................TTGCTTACTGTTCC---------TATATA...............................................................2011.00101000000000
..............................................TGGCCAAGGTGAGGA-GCTCCGCTA...................................................................................................................................................................................................................................................................................................................................................2421.00201000010000
.................................................................................................................T--CTTG---------A---TTAGTTTTATATATGGGT...................................................................................................................................................................................................................................................................2411.00110000000000
........................................................................................AAATAC----------------ATGT--CTTG---------A---TTAGT................................................................................................................................................................................................................................................................................2020.50100000010000
...................................................AAGGTGAGGA-GCTCCGCTAAAA................................................................................................................................................................................................................................................................................................................................................2220.50110000000000
...............................................................................................................................................................................................................................................................................................................ACTCAATCTAAGGATTTGCTTACTG..................................................................................2520.50101000000000
GGATTGGGCGACTTA---CGATCAGAATGCT...........................................................................................................................................................................................................................................................................................................................................................................................2820.50100000010000
...............................................GGCCAAGGTGAGGA-GCTCCGC.....................................................................................................................................................................................................................................................................................................................................................2120.50101000000000
..................................................CAAGGTGAGGA-GCTCCGCTAA..................................................................................................................................................................................................................................................................................................................................................2120.50100000010000
..ATTGGGCGACTTA---CGATCAGAATGCT...........................................................................................................................................................................................................................................................................................................................................................................................2620.50100000010000
.........................................................................................AATAC----------------ATGT--CTTG---------A---TTAGT................................................................................................................................................................................................................................................................................1920.50100000010000
........................................................GAGGA-GCTCCGCTAAAAA...............................................................................................................................................................................................................................................................................................................................................1820.50101000000000
................................................GCCAAGGTGAGGA-GCTCCGCT....................................................................................................................................................................................................................................................................................................................................................2120.50100000010000
..........................................................................................................................................................................................................................................................................................................................GGATTTGCTTACTGTTCC---------C....................................................................1920.50100100000000
...TTGGGCGACTTA---CGATCAGAATGCTA-.........................................................................................................................................................................................................................................................................................................................................................................................2620.50100000010000
.................................................................................GATTACAAAATAC----------------ATGT--CTT...................................................................................................................................................................................................................................................................................................2020.50101000000000
...............................................GGCCAAGGTGAGGA-GCTCCG......................................................................................................................................................................................................................................................................................................................................................2020.50101000000000
..............................................................................................................................................................................................................................................................................................................AACTCAATCTAAGGATTTGCT.......................................................................................2120.50100000010000
........................................................GAGGA-GCTCCGCTAAAAAAC.............................................................................................................................................................................................................................................................................................................................................2020.50101000000000
....................................................................................................................................................................................................................................................................................................................ATCTAAGGATTTGCTTACTGTTCC---------.....................................................................2420.50100000010000
............................................................................................................................................................................................................................................................................................................GGAACTCAATCTAAGGAT............................................................................................1820.50110000000000
....................................................................................................................................................................................................................................................................................................................ATCTAAGGATTTGCTTACT...................................................................................1920.50101000000000
..ATTGGGCGACTTA---CGATCAGA................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000010000
..............................................TGGCCAAGGTGAGGA-GCTCCGCTAAAA................................................................................................................................................................................................................................................................................................................................................2720.50100000010000
..ATTGGGCGACTTA---CGATC...................................................................................................................................................................................................................................................................................................................................................................................................1820.50110000000000
..................................................CAAGGTGAGGA-GCTCCGCT....................................................................................................................................................................................................................................................................................................................................................1920.50101000000000
.GATTGGGCGACTTA---CGATCAGAATGCTA-.........................................................................................................................................................................................................................................................................................................................................................................................2820.50100000010000
....................ATCAGAATGCTA-CTCTT------AATGG.........................................................................................................................................................................................................................................................................................................................................................................2220.50101000000000
......................................................................................................................................................................................................................................................................................................................CTAAGGATTTGCTTACTGTTC...............................................................................2120.50100000010000
...............................................GGCCAAGGTGAGGA-GCTCCGCC....................................................................................................................................................................................................................................................................................................................................................2220.50100100000000
.GATTGGGCGACTTA---CGAT....................................................................................................................................................................................................................................................................................................................................................................................................1820.50101000000000
.......................................................................................................................................................................................................................................................................................................................................................................ATTTACGAAATTAATTACTAAAGGAGTA.......................2820.50101000000000
..................CGATCAGAATGCTA-CTCTT------AAT...........................................................................................................................................................................................................................................................................................................................................................................2220.50101000000000
.......GCGACTTA---CGATCAGAATGCTA-CTCT.....................................................................................................................................................................................................................................................................................................................................................................................2620.50100000010000
..ATTGGGCGACTTA---CGATCAGAATGCTA-.........................................................................................................................................................................................................................................................................................................................................................................................2720.50100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGTATATTATA---GCCTTAAGGGC..2720.50110000000000
.................................................................................GATTACAAAATAC----------------ATGT--CTTG---------A---TTA..................................................................................................................................................................................................................................................................................2520.50101000000000
.........GACTTA---CGATCAGAATGCTA-CTCTT------..............................................................................................................................................................................................................................................................................................................................................................................2520.50100000010000
...............................................GGCCAAGGTGAGGA-GCTCCGCT....................................................................................................................................................................................................................................................................................................................................................2220.50101000000000
......................................................GTGAGGA-GCTCCGCTAAAAAACT............................................................................................................................................................................................................................................................................................................................................2320.50100000010000
.....................................T------AATGGCCAAGGTGAGGA-GC..........................................................................................................................................................................................................................................................................................................................................................2020.50100000010000
.....................TCAGAATGCTA-CTCTT------AATGGCCAAGGC..................................................................................................................................................................................................................................................................................................................................................................2820.50100100000000
................................................................................................................................................................................................................................................................ATGCTTCTACATGTCTGCA.......................................................................................................................................1920.50101000000000
...................................CTT------AATGGCCAAGGTGAGGA-............................................................................................................................................................................................................................................................................................................................................................2020.50100000010000
.............................................ATGGCCAAGGTGAGGA-GCTCCGC.....................................................................................................................................................................................................................................................................................................................................................2320.50100000010000
...................................CTT------AATGGCCAAGGTGAGGA-GCTCCG......................................................................................................................................................................................................................................................................................................................................................2620.50100000100000
......................................................................................................................................................................................................................................................................................................................CTAAGGATTTGCTTACTGTTCC---------T....................................................................2320.50101000000000
..........................................................................................................................................................................................................................................................................................................................................................................TACGAAATTAATTACTAAAGGAGTATATT...................2920.50100000010000
....................................................................................................................................................................................................................................................................................................................ATCTAAGGATTTGCTTACTGT.................................................................................2120.50100000010000
...............................................................................CAGATTACAAAATAC----------------ATGT--C.....................................................................................................................................................................................................................................................................................................2020.50100000010000
............................................AATGGCCAAGGTGAGGA-GCTCC.......................................................................................................................................................................................................................................................................................................................................................2220.50110000000000
.............................................ATGGCCAAGGTGAGGA-GCT.........................................................................................................................................................................................................................................................................................................................................................1920.50100000010000
.........GACTTA---CGATCAGAATGCTA-CT.......................................................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
.............TA---CGATCAGAATGCTA-CTCTT------AA............................................................................................................................................................................................................................................................................................................................................................................2320.50100000010000
................................................................................AGATTACAAAATAC----------------ATGT--CTT...................................................................................................................................................................................................................................................................................................2120.50101000000000
............................................AATGGCCAAGGTGAGGA-GCT.........................................................................................................................................................................................................................................................................................................................................................2020.50100000010000
.............................................ATGGCCAAGGTGAGGA-GCTCCGCT....................................................................................................................................................................................................................................................................................................................................................2420.50101000000000
...................................CTT------AATGGCCAAGGTGAGGA-GCTCC.......................................................................................................................................................................................................................................................................................................................................................2520.50100000010000
...TTGGGCGACTTA---CGATCAG.................................................................................................................................................................................................................................................................................................................................................................................................1920.50101000000000
..........ACTTA---CGATCAGAATGCTA-CT.......................................................................................................................................................................................................................................................................................................................................................................................2120.50100000010000
..ATTGGGCGACTTA---CGATCAGAATGC............................................................................................................................................................................................................................................................................................................................................................................................2520.50110000000000
.....................................................................................................................................................................................................................................................................................................................TCTAAGGATTTGCTTACTGTTC...............................................................................2220.50100000010000
....................................................................................................................................................................................................................................................................................................................ATCTAAGGATTTGCTTACTGTTC...............................................................................2320.50100000010000
..ATTGGGCGACTTA---CGATCA..................................................................................................................................................................................................................................................................................................................................................................................................1920.50101000000000
.GATTGGGCGACTTA---CGATCA..................................................................................................................................................................................................................................................................................................................................................................................................2020.50100000010000
..............................................................................................................................................................................................................................................................................................................AACTCAATCTAAGGATTTGCTTA.....................................................................................2320.50101000000000
............TTA---CGATCAGAATGCTA-CT.......................................................................................................................................................................................................................................................................................................................................................................................1920.50110000000000
...TTGGGCGACTTA---CGATCAGA................................................................................................................................................................................................................................................................................................................................................................................................2020.50100000010000
..................CGATCAGAATGCTA-CTCTT------AATGGC........................................................................................................................................................................................................................................................................................................................................................................2520.50100100000000
..................................TCTT------AATGGCCAAGGTGAGGA-GCT.........................................................................................................................................................................................................................................................................................................................................................2420.50100000010000
...................................CTT------AATGGCCAAGGTGAGGA-GCTCCGCTA...................................................................................................................................................................................................................................................................................................................................................2920.50100000010000
..............................................................................................................................................................................................................................................................................................................AACTCAATCTAAGGATTTGCTTACTGT.................................................................................2720.50100100000000
.........................................................................................................................................................................................................................................................................................................................................................................TTACGAAATTAATTACTAAAGGAGT........................2520.50100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................GGAGTATATTATA---GCCTTAAGGGC..2420.50101000000000
..........................................................................................ATAC----------------ATGT--CTTG---------A---TTAGTTTT.............................................................................................................................................................................................................................................................................2120.50101000000000
...............................................GGCCAAGGTGAGGA-GCTCC.......................................................................................................................................................................................................................................................................................................................................................1920.50101000000000
............................................................................................................................................................................................................................................................................................................................................................................................AGGAGTATATTATA---GCCTTAAGGG...2420.50101000000000
..ATTGGGCGACTTA---CGATCAG.................................................................................................................................................................................................................................................................................................................................................................................................2020.50100000010000
droEug1
GAACAAAGGAAACAATTTCACTTAAGAATTCG-AAATTGTATAATATAGTTGAGGTAAGTA-TT--------------------------------------------------------------------------TATATAGGTACATAT-----GTTTATGTATGCATGTACAAATATAA-------------------------------------------------------TGTGTCACGG---TGGATTCTATCTACATAT--GTTT--AT----------------TTTAATACTTCATACTTAG-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATAAATAAATATATA---TAAATAAA------------------------------------------------------------------------------------------------------------------TATATATAAATAT-----ATATATATATAAATATATATATAAAT-------------------------------------------------------AAATATATAT---ATAAATAAATATAT------------------ATATATATATATAT----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAAAATATT---------------------------------------------GTAACCA-G-----------------------------------------------------TGCG---------AGGGAGATATATGTATGTAGATAT-----TTTGATTGGTATATTTTGATAGGTAAAAATATACACAACAAAATTGCATTTATACTTTTTGGAAATCTTTAT---------AGATGTGGGCGCAGGAGA------------------------------------------------------------------------------------C----------------------------------------------ATTTTAAAATCGTTAATGGGCGSizeHit CountTotal NormTotal
No Reads
droEle1
GGATTGGGCGACCTA---CGATCAAAATGCCA-TTGTTGGAAGTATTGGCCAAGGTGAGAT-GCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAAAATTGATAATTA---TACATATA---TAT-ATATTA-----GGTGA-------------------------------------------------------------------TTAG---------TATT-----AGTTTTTCTGAATAT-----GTATATGTATATATGTATATATATA------------------------------------------TATTATATCATATA-------------------------TC------------------ATATATATATATATAGAAA-----------------------------------------------------------------AACTAATACTAA------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AGGTTGGGTGACCTA---CGACCAGAAAGCTT-TTCTTGGATGCAAAAGCCGAGGTGAGAA-ATTATCTACAATAAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGATTGGGTCACCTA---CGATCCGAATTTCA-CTATCGAAAGAAATGGCAAAGGTAAGCA-ACTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TGACTGGGCGGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAACTGGGCGGATTA---C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AGATTGGGGAAGCTA---CGATCAGAATGCAA-CCCTTGGAACC---AGCAGAGGTGAGCA-TCCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................ATCAGAATGCAA-CCCTTGG..................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................TCAGAATGCAA-CCCTTGGAACC---AGCAG......................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
..........................ATGCAA-CCCTTGGAACC---AG.........................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
ATTTC------------------------------------------------------------------------------------------------------------TCACTCG---------AATTTTGTCGACTTACACACATAT-----GTACATGTATGCATGCATGTATGTAT-------------------------------------------------------GTATGTATGT---ATGTACATATGTAC------------------ATATTTACATATGT----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GGGC-----GAACAA---ACATTAAAACGTTAAATATT------GATAGCCAGAGTCAGTC-T---------------A-TAAATA-------------------AAAAAAT-----------------------A----CATACATAAACAT-----ACTTATATATATATATATATA----------------------------------------------------------------------------TCTATATATAT------------------ATCTATATATAGAA----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ATAAAAA---------------------------------------------AAGTAAGAG-GTTCTAGTCGGGAGCTCCCGACTAGGAGATACCCTGAACCCTC--------TTCTTCAAACAT-----CAAATGCATATATATATATATAT-----ATATATGTATATATAT----------------------------------------------------------------------------------ATATATATAT------------------ATATATATATATAT----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................GTTCTAGTCGGGAGCTCCCGA.......................................................................................................................................................................................................................................................................................................................................21200.153000000000000000001000000000000020000000000000000000000000000000
.............................................................................................CCCTGAACCCTC--------TTCTTCAAACAT-----........................................................................................................................................................................................................................................................................................24140.071000000000000000000000000000010000000000000000000000000000000000
................................................................................................TGAACCCTC--------TTCTTCAAACAT-----........................................................................................................................................................................................................................................................................................21140.071000000000000000000000000000001000000000000000000000000000000000
...................................................................................CTAGGAGATACCCTGAACCCT..................................................................................................................................................................................................................................................................................................................21200.051100000000000000000000000000000000000000000000000000000000000000
......................................................................CGGGAGCTCCCGACTAGGAGA...............................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
.............................................................................................CCCTGAACCCTC--------TTCTTCA..................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................CGACTAGGAGATACCCTGAAC.....................................................................................................................................................................................................................................................................................................................21200.051100000000000000000000000000000000000000000000000000000000000000
..............................................................................CCCGACTAGGAGATACCCTGAACC....................................................................................................................................................................................................................................................................................................................24200.051100000000000000000000000000000000000000000000000000000000000000
................................................................TCTAGTCGGGAGCTCCCGACT.....................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................TAAGAG-GTTCTAGTCGGGAGC.............................................................................................................................................................................................................................................................................................................................................21200.051000000000000010000000000000000000000000000000000000000000000000
...........................................................AG-GTTCTAGTCGGGAGC.............................................................................................................................................................................................................................................................................................................................................17200.051000000000000000000000000000000000000000000000000000010000000000
..........................................................................AGCTCCCGACTAGGAGATACCCTGAACC....................................................................................................................................................................................................................................................................................................................28200.051100000000000000000000000000000000000000000000000000000000000000
.....................................................................................AGGAGATACCCTGAACCCTC--------T........................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
......................................................................................GGAGATACCCTGAACCCTC--------TTC......................................................................................................................................................................................................................................................................................................22200.051100000000000000000000000000000000000000000000000000000000000000
...............................................................................CCGACTAGGAGATACCCTGA.......................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................ATATATATATAT-----ATATATGT....................................................................................................................................................................................................................................................20200.051000000000000001000000000000000000000000000000000000000000000000
................................................................................CGACTAGGAGATACCCTGAACCC...................................................................................................................................................................................................................................................................................................................23200.051100000000000000000000000000000000000000000000000000000000000000
......................................................GTAAGAG-GTTCTAGTCGGGAGC.............................................................................................................................................................................................................................................................................................................................................22200.051010000000000000000000000000000000000000000000000000000000000000
..............................................................................CCCGACTAGGAGATACCCTG........................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
..............................................................................CCCGACTAGGAGATACCCT.........................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000100000
droMoj3
TCAAAAT--GACAAA---CGAACGA-ATGCGA-ACCGAAG--------GCAGAG------A-GATAATGAAAAACGCGATCGGTTACGGAAAGC----------------GAGT----------------AATATACTTACATATATGCATAT-----TTTCATATTTATATTTCTATATGTGT------------------------------------------------------A-------------------------AG------------------ATTTATTTGTATGT----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AACACGT----------------------------------------------------------------------------------------------------------------------------------CTGTGTATATATATAT-----ATATATGTATATATATATATATATGT-------------------------------------------------------CTATGTCTAT---ATCTA------------T--GTCT--ATATCTATGTCTATATTTAT----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:24 PM