ID:

dsi_7036

 Coordinate:

3l:207174-207366 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.9 -31.8 -31.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGTTAATCTCTTCGACAACTACAACAACTTCAATAAAACACATTAAAAGGTTGCCTGGAGTAAATTCTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTTCGTAAATTTTGTTCTTTGAGCTCTTAGTACTCGTTCATATTAACGCAATCAAATTCTCAAACTTTGAAAATAACTTACATTTTTGGAAACGATTAGGTTGGTGGCGGCGTATCAATAGCTTATACTCGTATGATGAATTCGAATTATTTTGTGCGAGAAATTGAAGAAGAAGAAGATTATGATGATGAG
**************************************************......((((((((...((((((..(((((((((....)))))..))))..))).)))...)))))))).((((((.((.((((((((...(((((((..((((...(((.((((....................)))))))..))))..))))))))))).)))).)).)))))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR902008
ovaries
............................................................................................................................................ATATAATCGCAAACAAATTCT.................................................................................................................................... 21 3 12 23.50 282 210 42 0 4 21 0 2 1 0 0 0 2 0
................................................................TTCTACAACTGATCTCTGATTAAAGT........................................................................................................................................................................................................... 26 0 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................ATTCTCAAACTTTAAA......................................................................................................................... 16 1 16 1.13 18 0 0 12 0 0 0 4 0 2 0 0 0 0
.............................................................................................................................................................................................................................................................TGTACCAGAACTTGAAGAAGAAG................. 23 3 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.........................................................................TGATCTCTGATTAAAGTCAG........................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................ATTCTCAAACTTTAAATAT...................................................................................................................... 19 2 16 0.94 15 0 0 0 0 7 0 0 4 0 4 0 0 0
................................................................................................................................................................................................................................................................................TAAGAAGATTATGATGAT... 18 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................ATTCTCAAACTTTAAATA....................................................................................................................... 18 2 20 0.50 10 0 0 2 0 0 0 1 5 0 2 0 0 0
.......................................................................................................................................................................................................................................................TTATTTTGTGCGAGA............................... 15 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................TATAATCGCAAACAAATTCT.................................................................................................................................... 20 3 20 0.25 5 0 0 0 5 0 0 0 0 0 0 0 0 0
...................................................................TACAACTGATTCCTGAGTAAA............................................................................................................................................................................................................. 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................AAGAAGAAGAAGTTTACGATA..... 21 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................CCTTAGTACTCGTGCAT....................................................................................................................................................... 17 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................ATACTCTTATGATGA..................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................TCCGCAAATTTTGTTCTTTAA.......................................................................................................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................TTCTCAAACTTTAAAA........................................................................................................................ 16 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................GAAGATTACGATGAT... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TATTTGAAGAAGAAGAACATT........... 21 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACAATTAGAGAAGCTGTTGATGTTGTTGAAGTTATTTTGTGTAATTTTCCAACGGACCTCATTTAAGATGTTGACTAGAGACTAATTTCAGTCCATCCACACAAGCATTTAAAACAAGAAACTCGAGAATCATGAGCAAGTATAATTGCGTTAGTTTAAGAGTTTGAAACTTTTATTGAATGTAAAAACCTTTGCTAATCCAACCACCGCCGCATAGTTATCGAATATGAGCATACTACTTAAGCTTAATAAAACACGCTCTTTAACTTCTTCTTCTTCTAATACTACTACTC
**************************************************......((((((((...((((((..(((((((((....)))))..))))..))).)))...)))))))).((((((.((.((((((((...(((((((..((((...(((.((((....................)))))))..))))..))))))))))).)))).)).)))))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body
.........................................................CTCATTTAAGATGTTGACTA........................................................................................................................................................................................................................ 20 0 1 3.00 3 3 0 0 0 0 0 0
............................................................................AGAGCATGATTTCAGTCCAT..................................................................................................................................................................................................... 20 3 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................TTGCGTTAGTTTAAGAGTT................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................GTCCATCCACACAAGCATTTA...................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................TACTGCTTCTTCTTCTAAGACT....... 22 3 2 0.50 1 0 0 0 1 0 0 0
................TTGACGTTGTTGAATTTAT.................................................................................................................................................................................................................................................................. 19 2 16 0.38 6 1 4 0 0 1 0 0
............................................................................AGAAACCAATTTCAGTCC....................................................................................................................................................................................................... 18 2 6 0.33 2 0 0 0 0 2 0 0
............................................................................AGAGCATGATTTCAGTCCA...................................................................................................................................................................................................... 19 3 8 0.13 1 0 0 0 0 1 0 0
...................................................ACGGATCTCATTTCAGAAG............................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 1 0
...........................GAAGTTATTCGGTGTAAT........................................................................................................................................................................................................................................................ 18 2 13 0.08 1 0 0 0 0 0 1 0
.................................................................AGATGTTGACTTGTGGCTA................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 1
........................................................................................................................................................AGTTTTAGACTTTGAAAC........................................................................................................................... 18 2 18 0.06 1 0 1 0 0 0 0 0
........AGATGCTGTTGATGTT............................................................................................................................................................................................................................................................................. 16 1 20 0.05 1 0 0 0 1 0 0 0
.........................................................................ACTAGAGAGTAATTTCG........................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0
................TTGATGTTGTTGGAGT..................................................................................................................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:207124-207416 - dsi_7036 TGTTAATCTCTTCGACAA-CT---ACAACAAC------------T------------------------------TCAATAAAACACATTAAAAGGTTGCCTGGAGTAAATTCTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTTCGTAA----A-----TTT---TGTT-CT------------------------------------------------TTGAGCTCT------TAG--TACTC----GTTCA--T--ATT---AA-C----------------GCAAT-------------------------------------------------------------------CAAA---T-------TCT--------------------------CAAACT---------------TTGAAAATA----------ACTTACATT-------------------------------------TTT---------------------GGAAACGATTAGGTTGGTGGCGGCGT------ATCAATAGCTTATACTCGTATGATGAAT---------------TCGAAT----TATTTTGTGCGAGAAATTGA------------AGA-------------------------------------AGAAGAAGATTATGATGATGAG
droSec2 scaffold_2:264190-264482 - TGTTAATCTCTTCGACAA-CT---ACAACAAC------------T------------------------------TCAATAAAACACATTAAAAGGTTGCCTGGAGTAAATTCTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTTCGTAA----A-----TTT---TGTT-CT------------------------------------------------TTGAGCTCT------TAG--TACTC----GTGCA--T--ATT---AA-C----------------GCAAT-------------------------------------------------------------------CAAA---T-------TCT--------------------------CAAATT---------------TTGAAAATA----------ACTTACATT-------------------------------------TTT---------------------GGAAACGATTAGGTTGGTGGCGGCGT------ATCAATAGCTTATACTCGTATGATGAAT---------------TCGAAT----TATTTTGTGCGAGAAATTGA------------AGA-------------------------------------AGAAGAAGATTATGATGATGAG
dm3 chr3L:236663-236955 - TGTTAATCTCTTCGACAA-CT---ACAACAAC------------T------------------------------TCAATAAAACACATTAAAAGGTTGCCTGGAGTAAATTCTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTTCCTAA----A-----TTT---TGTT-CT------------------------------------------------TTGCGCTCT------TAG--TATTT----GTTCA--T--ATT---AA-C----------------GCAAT-------------------------------------------------------------------CAAA---T-------TCT--------------------------CAAATT---------------TTGAAAATA----------ACTTACGTT-------------------------------------TTT---------------------GGAAACGATTAGGTTGGTGGCGGCGT------ATCAATAGCTTATACTCGTATGATGAAT---------------TCGAAT----TATTTTGTGCAAGAAATTGA------------AGA-------------------------------------AGAAGAAGATTATGATGATGAG
droEre2 scaffold_4784:225263-225549 - TGTTAATCTCTTCGCCAA-CT---ACAACAAC------------T------------------------------ACAATAAAACACATTAAAAGGTTGCCTGGAGTAAATTCTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTTCGTAA----A-----TTC---TGTTACT------------------------------------------------TTGAGCTAT------TAGTGTATCC----GTTCA--T--ATT---AA-C----------------GCAAT-------------------------------------------------------------------AAAT---T-------TTT--------------------------G-GATC---------------TTGAATATA----------ACTTACATT-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGCGGCGT------ATCAATAGC------TTATATGATGAAT---------------TCAAAT----TATTTTGTGCAAGAATTTGA-----------AAAAAA----------------------------------------AAGATTATGATGATGAG
droYak3 3L:215162-215445 - TGTTAATCTCTTCGCCAA-CT---ACAACAAC------------T------------------------------ACAATAAAACACATTAAAAGGTTGCCTGGAGTAAATTCTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTTCGTAA----A-----TTT---TGTTACT------------------------------------------------TTGAGCTAT------TAG--TATTC----GTTTA--T--ATT---AA-C----------------GCAAC-------------------------------------------------------------------CAAA---A-------TCT--------------------------C-AACT---------------TTGAATATA----------ACTTACATT-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGCGGCGT------TTCAATAGC------TTATATGATGAAT---------------TCGAAT----TATTTTGGGCAAGAAATTG------------AAGAAG----------------------------------------AAGATTACGATGATGAG
droEug1 scf7180000409184:101233-101522 + TGTTAATCTCTTCGTCAA-CT---ACAAC------------AACTTCTCA---------------AC-------TATAATAAC--ACATTAAAAGGTTGCCTGGAGTAAATACTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTTTGTTAACAAA-----TT----------TA-----------------------------------------------TCGAACTCT------TCG--CATAC----GTTCATAT--ATT---TA-T----------------GCAAT-------------------------------------------------------------------GAAT---C-------TCT--------------------------T-GATT---------------TTGAATATA----------ACGCAAATT-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGAGGCGT------ATCAATTGC------TTGTATGGTGAAT---------------TCGAAT----TATATTTTGCATGAAACGC------------AAGAAG----------------------------------------ATGATTATGATGATGAA
droBia1 scf7180000300910:109839-110113 + TGTTAATCTCTTCGCCAA-CT---ACAAC------------ATCTACTCA---------------AC-------TATGATAACACACATTAAAAGGTTGCCTGGAGTAAATACTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTT----AA---ATACT-TT----------C------------------------------------------------TTGAATTCT------TTG--AATAC----G------------------T----------------GCAAT-------------------------------------------------------------------GAAA---C-------T-T--------------------------T-GATT---------------AAAAATATA----------ACTCAAAAT-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGCGGCTT------ATCAATTGC------TTGTATGGTCAAT---------------TCGAAT----TATGTTTTGCATAAAACGC------------ATGAAG----------------------------------------AAGATTATGATGATGAA
droTak1 scf7180000415208:78730-79018 + TGTTAATCTCTTCGCCAA-CT---ACAAC------------AACTACTCA---------------AC-------TATGATAACACACATTAAAAGGTTGCCTGGAGTAAATACTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTCTGCTAACAAA-----TT----------T------------------------------------------------TTGAACTCC------TCG--CATAC----GTTCA--T--ATT---TA-T----------------GCTAT-------------------------------------------------------------------GAAA---C-------TCT--------------------------T-GATT---------------CTGAATATA----------ACTAAAATT-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGCGGCGT------ATCAATTGC------TTGTATGGTGAAT---------------TCGAAT----TATGTTTTGCATAAAATGC------------AAGAAG----------------------------------------AAGATTATGACGATGAA
droEle1 scf7180000491249:7854-8147 - TGTTAATCTCTTCGACAA-CT---ACGAC------------CACTTCTCA---------------AC-------TATAATAACACATA-AAAAAGGTTGCCTGGAGTAAATACTACAACTGATTCCTGATTAAAGTCAGGTAGGTGTGTCTGTAAACAAA-----TT----------TT-----------------------------------------------TCTAACACTTTTTTTTCG--CACAC----GTTCA--T--ATA---TG-C----------------GCAAA-------------------------------------------------------------------TAA----C-------TAT--------------------------T-GATT---------------CTGAATACA----------ACTCACCAT-------------------------------------CTT---------------------GGAAACAATTAGGTTGGTGGCGGCGT------ATCAATTGC------TTTTGTGGCGAAC---------------TCGAAT----TATATGTTGAATGAAATGA------------AAGAAG----------------------------------------AAGTCTATGATGATGAA
droRho1 scf7180000777885:123531-123819 + TGTTAATCTCTTCGCCAA-CT---ACGAC------------CACTTCTCA---------------AC-------TTTAATAACACACATTAAAAGGTTGCCTGGAGTAAATACTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTCTGTCAACAAA-----TT----------A------------------------------------------------AATAACTCT------TCG--CATAC----GTTTA--T--ATT---TA-T----------------GCAAT-------------------------------------------------------------------GAAA---C-------TCT--------------------------T-TATT---------------CTGAATAAA----------TCCCACAAT-------------------------------------TTT---------------------GGAAAAAATTAGGTTGTTGGCGGCGT------ATCAATTGC------TTGTGTGATGAGC---------------TCGAAT----TATATGTTGCATGAAATGC------------AAGAAG----------------------------------------AAGACTATGATGATGAA
droFic1 scf7180000454105:49343-49627 - TGTTAATCTCTTCGCCAA-CT---ACAAC------------AACTACTCA---------------AC-------TATAATGACACACATTAAAAGGTTGCCTGGAGTAAATACTACAACTGATCTCTGATTA-AGACAGGTAGGTGTGTCTGTCAACAAC---A-TT----------T------------------------------------------------TAAAACTCT------TCG--CATAC----CTCTA--G--ATT---TA-T----------------GCAAT-------------------------------------------------------------------AATG---C-------TTT--------------------------T-GAT----------------TTGAATATA----------ACTGAAATT-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGCGGCGT------ATCAATTGC------TTGTGAGGTGAAT---------------TTGAAT----TATCTGTTGCACGAAATGC------------AAG-------------------------------------------AAGACTGTGATGATGAA
droKik1 scf7180000302510:779278-779592 - TGTTAATCTCTTCGCCAC-CA---CCAACTAC---------TACTACTCAACAACAAT-AA-----CT-CCGACCATGATA--ACACATTAAAAGGTTGCCTGGAGTAAATACTACAACTGATCTCTGATTAAAGTCAGGTAGGTGGTTCTGTCAA---------AGC---AATT-TC------------------------------------------------TTTTG--CTTC----GTT--TACAC----ACACA--T--AGTATGTA-T----------------ACATT-------------------------------------------------------------------GAAAGCCCTTCCGATTATTGATTGCAA--------------------------------------AAGAATATATCCCAAAATTTCCTG-----------------------------------------------------------------GAACAAAACTAGATAACTGA------------------------------------AAAT---------------GCAAGT----TATGTATTGTATGGAGTAC------------AGGAAGAAGACGA----------------------------AGACGAGGATGACGAGGACGAA
droAna3 scaffold_13337:2175332-2175754 - TGTTAATCTCTTCGCCAA-CT---CTTGCAAC------------TCTCCAACC---AACTGCGCAACT-CG---TATGATAACACACTTT-AAAGGTTGCCTGGAACAAATACTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTCTTCT----CC-----TC----------T--CGAC-CC---------------------------------------------------------------------TTCTTAT--ACA---TA-TGTAGCGTATCTTGTTCGTAATCCCATAGTACCAC----ACCAT-------ACTAC------------------------------------------TCTGACCAGTGAGCG--AAATCCTAATGCCTCTGCT-GATTAAAATCATAGTTTAATTGCATATT----------ATTTT--TG-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGCAGTGG------CGACATGGCCAGTACCAGT---------------CCCAGT----CCCAATGCCGACTATATGCAAGATCTTGAGCAAGAGGCGGATGAAGACGACGATGATGATGATGATGAGGAGG-TGGAGGAGGAGGAGGAGGACGACGATGAG
droBip1 scf7180000395453:13642-13999 + GGTTAATCTCTTCGCCAA-CT---CTCGCAACTCTC----CAAC------------ATCTACGCAAC-------TATGATAACACACTTTAAAAGGTTGCCTGGAACAAATACTTCAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTCCCTCGACATC-----TG-------------------------------------------------------------------------------------------------------------TACGCTATCTTGTTCGTAATCCC----TCCCACCCACA-CAT-------AC-AC------------------------------------------T-TGACTCGTGAGCG--AAAT-CTAATGCCTCTGCT-GGTTAGAATCACAGT----TT-AACAGA----------GTTTTC-GT-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGCGGTGGCGATGTGCCCATGGT------CTGCATGGCGAATCCCAGTCCCAGTGAATCGCAA----GATCTAGAGCAAGATCTTGAGC---------AAGATG----------------------------------------AAGAGTACGAGGA----
dp5 XR_group8:1302435-1302785 - TGTTAATCTCTTCGCCAA-CC---ACAACTAC---T----CAACTACTCA---------------AC-------TTTAATAACAAACATTAAAAGGTTGCCTGGAATAAGTACTACAACTGATCTCTGATTAAAGCCAGGTAGGTGT--CCGTCAACACA-----TT----------T--TGAAT--------------------------------------------------------------ATAC----ATT---------------T-TGAACCTATATTTGTAGCAATAAT----GCCCATGCATA-AGCAGGCTATAA-AC---------------------------------GAGA---T-------TTT--------------------------T-TA---------TTGTTGTATTGAATAAT---------TACTTCGAAT-------------------------------------TTT---------------------GGTAACAATTAGGTTGGTGGCGGCAT------GCTAAAAAT------TTGTTTATTGAAT---------------ATGAAT----TTAAT---------ATC---------------TGAAGAAGACGATGGCGATGGCGATAGCGATG-G---CGATGACAATGACGATGACGATGAA
droPer2 scaffold_32:170590-170940 + TGTTAATCTCTTCGCCAA-CC---ACAACTAC---T----CAACTACTCA---------------AC-------TTTAATAACAAACATTAAAAGGTTGCCTGGAATAAGTACTACAACTGATCTCTGATTAAAGCCAGGTAGGTGT--CCGTCAACACA-----TT----------T--TGAAT--------------------------------------------------------------ATAC----ATT---------------T-TGAACATATATTTGTAGCAATAAT----GCCCATGCATA-AGCAAGCTATAA-AC---------------------------------GAGA---T-------TTT--------------------------T-TA---------TTGTTGTATTGAATAAT---------TACTTCGAAT-------------------------------------TTT---------------------GGTAACAATTAGGTTGGTGGCGGCAT------GCTAAATAT------TTGTTTATTGAAT---------------ATGAAT----TTAAT---------ATC---------------TGAAGAAGACGATGGCGATGGCGATAGCGATG-G---CGATGGCGATGACGATGACGATGAA
droWil2 scf2_1100000004511:11400430-11400707 + TGTTAATCTCTTCGGCAA-CC---ACAACTAC------------TA--CAACCACA---------------------AAAAACAAACTATAACAGTTTGCCTGGAATAAATACTACAACTGATCTCTGATTAAAGCAAGGTAGGTCA-----------AA-----TT----------TTTTGTATC----------------------------------------ATGCATTCC------A-----------------------------------TACAAACATTTGT---TATAC--------------------------------GATAAAAACGAACTAAAAGTACATATATTGTATGAGT----------------------------------------------------------------------------------TTTTTTT-------------------------------------TTT---------------------GCGAACAATTAGGTTGGTGGCGGCGTTTTCA-TCCTATTGT----ACT--T--------T---------------TAAAAA----TATTAGT-------TTC---------------TAAAGTCG-------------------------------------CATAACGT----GTTAA
droVir3 scaffold_10322:352315-352672 - TGTTAATCTCTTCGTCAA------ACAACTAC---T---ACAACATCTCAACCACAAA--------CTACAAACCATAACAAA--ATCGTAAAAGGTTGCCTGGAATAAATACTACAACTGATCTCTGATTAAAGCCAGGTAGGTGA--TCATCAT--------AT-CTAC--------------CATT-AAACATTATTTAAGTACTGTAT-------ATACAA-------------------TTTTTT-TATA---------------------------------------------------------------------------GAGAATAACGAATT-------------------A----------------A--------------------------T-GATT---------------TA--ATAAA----------------------------------TATTATGTGAATAA----TGTTATTGGTCACTTCCTACAAAAAAAAAAAAACAAATAGGTTGGTGGC---AT------CTCAATTGT------ATATGTTGTAAGC---------------TCAAAT----TATTTAGTACAAGATGGCGG------------TGA----------------------ATCTAAACA---TGATAATAATGATGATGATGATGAA
droMoj3 scaffold_6680:2387286-2387672 - TGTTAATCTCTTCGTCAAACCAAACCAACTAC---TACAACAACATCTCAACCACAAA-CT--CTACTACAAACCATAACAAAAATCGTAAAAAGGTTGCCTGGAATAAATACTACAACTGATCTCTGATTAAAGCCAGGTAGGTGCCT--ACT----CA---TAT-CTAC--------------CATTTTAACATTCCTTAAGTC-TCTATCAGTTGTAATCGA-------------------TGTATC-TATA---------------------------------------------------------------------------G--------------------------------------------------------CTAAAT--AAA-------------------------------TGTATATC---------TAGATCAAATTATGATTATAATTAAATTGGTGTAAATAATATATGTTATA--------------TACTATAATATACGCATAGGTTGGTGGC---GT------CTCAATTGT------GTACGTTGTAAAC---------------TCGAAT----TATGTTGCGCCAGGCGGCGA------------TCC----------------------AGCTAAGCC---TGGTGGCAATGATGATGATGATGAG
droGri2 scaffold_15110:174182-174498 + TGTTAATCTCTTCGCCAAACA---ACAACAAC---TACAACAACATCTCAACCACAAT--------CTACAAACCATAACAAA--ATCGTAAAAGGTTGCCTGGAATAAATACTACAACTGATCTCTGATTAAAGCCAGGTAGGTGC--CCACCAA--------AT-CCGCAAT---T--TACAT-----TAACATTTCCTAAGTA-TGT-T-------GTACATCTTT--------------------------ATTCATTTATTGA---CA-T----------------ACAAT------------------------------------------------------------------------------------------------------------------------------------GTGTAAGTA----------ATTAATTTT-------------------------------------AATGGTCACTTCCT----------GATAACAATTAGGTTTGTGAC---AT------TTCAATTGT------TTATG-------------------------------------TTATACAAGATATTGA------------A------------------------------T-C---CGATGATGATAATGATGATGATGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGTTAATCTCTTCGACAA-CT---ACAACAAC------------T------------------------------TCAATAAAACACATTAAAAGGTTGCCTGGAGTAAATTCTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTTCGTAA----A-----TTT---TGTT-CT------------------------------------------------TTGAGCTCT------TAG--TACTC----GTTCA--T--ATT---AA-C----------------GCAAT-------------------------------------------------------------------CAAA---T-------TCT--------------------------CAAACT---------------TTGAAAATA----------ACTTACATT-------------------------------------TTT---------------------GGAAACGATTAGGTTGGTGGCGGCGT------ATCAATAGCTTATACTCGTATGATGAAT---------------TCGAAT----TATTTTGTGCGAGAAATTGA------------AGA-------------------------------------AGAAGAAGATTATGATGATGAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................TTCTACAACTGATCTCTGATTAAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00300000020100000000
.......................................................................................................................TGATCTCTGATTAAAGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TATTTTGTGCGAGA................................................................................1530.33100000000001000000
droSec2
TGTTAATCTCTTCGACAA-CT---ACAACAAC------------T------------------------------TCAATAAAACACATTAAAAGGTTGCCTGGAGTAAATTCTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTTCGTAA----A-----TTT---TGTT-CT------------------------------------------------TTGAGCTCT------TAG--TACTC----GTGCA--T--ATT---AA-C----------------GCAAT-------------------------------------------------------------------CAAA---T-------TCT--------------------------CAAATT---------------TTGAAAATA----------ACTTACATT-------------------------------------TTT---------------------GGAAACGATTAGGTTGGTGGCGGCGT------ATCAATAGCTTATACTCGTATGATGAAT---------------TCGAAT----TATTTTGTGCGAGAAATTGA------------AGA-------------------------------------AGAAGAAGATTATGATGATGAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TGTTAATCTCTTCGACAA-CT---ACAACAAC------------T------------------------------TCAATAAAACACATTAAAAGGTTGCCTGGAGTAAATTCTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTTCCTAA----A-----TTT---TGTT-CT------------------------------------------------TTGCGCTCT------TAG--TATTT----GTTCA--T--ATT---AA-C----------------GCAAT-------------------------------------------------------------------CAAA---T-------TCT--------------------------CAAATT---------------TTGAAAATA----------ACTTACGTT-------------------------------------TTT---------------------GGAAACGATTAGGTTGGTGGCGGCGT------ATCAATAGCTTATACTCGTATGATGAAT---------------TCGAAT----TATTTTGTGCAAGAAATTGA------------AGA-------------------------------------AGAAGAAGATTATGATGATGAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................TCTACAACTGATCTCTGATTAAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25114.00140000000000000000000000010000000000000000000100020100100000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000200000000200000000000000000000000000
..............................................................................................................TTCTACAACTGATCTCTGATTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000060000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTCTACAACTGATCTCTGATTAAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000101101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TCTACAACTGATCTCTGATTAAAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000
...............................................................................................................TCTACAACTGATCTCTGATTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TCTACAACTGATCTCTGATTAAAGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000
...............................................................................................................TCTACAACTGATCTCTGATTAAAGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TTGCGCTCT------TAG--TATTT----GTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGATTAGGTTGGTGGCGG............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAATA----------ACTTACGTT-------------------------------------TTT---------------------G..................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AAAAGGTTGCCTGGAGTAAATTCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------------------------------TTT---------------------GGAAACGATTAGGTTGGTGGCG.............................................................................................................................................................2711.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................ATTAAAAGGTTGCCTGGAGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TGATCTCTGATTAAAGTCAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGA------------AGA-------------------------------------AGAAGAAGATT...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TAAATTCTACAACTGATCTCTGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTCTACAACTGATCTCTGATTAAAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAAGATTATGATGATGA.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CCTAA----A-----TTT---TGTT-CT------------------------------------------------TTGCGCTCT------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................ACTGATCTCTGATTAAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................GATTAAAGTCAGGTAGGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------------AGA-------------------------------------AGAAGAAGATTATGATG.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CAA-CT---ACAACAAC------------T------------------------------TCAATAAAACAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGATTATGATGATGAG2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTTGGTGGCGGCGT------ATCAATAG...........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................ATTAAAAGGTTGCCTGGAGTAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TCTACAACTGATCTCTGATTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTTGGTGGCGGCGT------ATCA...............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................GATTAAAGTCAGGTAGGTGTGTTCCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.............................................................................................................ATTCTACAACTGATCTCTGATTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................CTACAACTGATCTCTGATTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................ACTGATCTCTGATTAAAGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGA------------AGA-------------------------------------AGAAGAAGATTATGATG.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGGCGGCGT------ATC................................................................................................................................................1611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---------------------GGAAACGATTAGGTTGGTGGCGGC...........................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
....................T---ACAACAAC------------T------------------------------TCAATAAAACACATTAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TGTTAATCTCTTCGCCAA-CT---ACAACAAC------------T------------------------------ACAATAAAACACATTAAAAGGTTGCCTGGAGTAAATTCTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTTCGTAA----A-----TTC---TGTTACT------------------------------------------------TTGAGCTAT------TAGTGTATCC----GTTCA--T--ATT---AA-C----------------GCAAT-------------------------------------------------------------------AAAT---T-------TTT--------------------------G-GATC---------------TTGAATATA----------ACTTACATT-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGCGGCGT------ATCAATAGC------TTATATGATGAAT---------------TCAAAT----TATTTTGTGCAAGAATTTGA-----------AAAAAA----------------------------------------AAGATTATGATGATGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAGGTTGGTGGCGGC...........................................................................................................................................................1811.0010000010
..........TTCGCCAA-CT---ACAACAAC------------T------------------------------ACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
droYak3
TGTTAATCTCTTCGCCAA-CT---ACAACAAC------------T------------------------------ACAATAAAACACATTAAAAGGTTGCCTGGAGTAAATTCTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTTCGTAA----A-----TTT---TGTTACT------------------------------------------------TTGAGCTAT------TAG--TATTC----GTTTA--T--ATT---AA-C----------------GCAAC-------------------------------------------------------------------CAAA---A-------TCT--------------------------C-AACT---------------TTGAATATA----------ACTTACATT-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGCGGCGT------TTCAATAGC------TTATATGATGAAT---------------TCGAAT----TATTTTGGGCAAGAAATTG------------AAGAAG----------------------------------------AAGATTACGATGATGAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................TAAAAGGTTGCCTGGAGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.................................................................................................TGCCTGGAGTAAATTCTACAACTGATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
droEug1
TGTTAATCTCTTCGTCAA-CT---ACAAC------------AACTTCTCA---------------AC-------TATAATAAC--ACATTAAAAGGTTGCCTGGAGTAAATACTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTTTGTTAACAAA-----TT----------TA-----------------------------------------------TCGAACTCT------TCG--CATAC----GTTCATAT--ATT---TA-T----------------GCAAT-------------------------------------------------------------------GAAT---C-------TCT--------------------------T-GATT---------------TTGAATATA----------ACGCAAATT-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGAGGCGT------ATCAATTGC------TTGTATGGTGAAT---------------TCGAAT----TATATTTTGCATGAAACGC------------AAGAAG----------------------------------------ATGATTATGATGATGAASizeHit CountTotal NormTotal
No Reads
droBia1
TGTTAATCTCTTCGCCAA-CT---ACAAC------------ATCTACTCA---------------AC-------TATGATAACACACATTAAAAGGTTGCCTGGAGTAAATACTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTT----AA---ATACT-TT----------C------------------------------------------------TTGAATTCT------TTG--AATAC----G------------------T----------------GCAAT-------------------------------------------------------------------GAAA---C-------T-T--------------------------T-GATT---------------AAAAATATA----------ACTCAAAAT-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGCGGCTT------ATCAATTGC------TTGTATGGTCAAT---------------TCGAAT----TATGTTTTGCATAAAACGC------------ATGAAG----------------------------------------AAGATTATGATGATGAASizeHit CountTotal NormTotal
No Reads
droTak1
TGTTAATCTCTTCGCCAA-CT---ACAAC------------AACTACTCA---------------AC-------TATGATAACACACATTAAAAGGTTGCCTGGAGTAAATACTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTCTGCTAACAAA-----TT----------T------------------------------------------------TTGAACTCC------TCG--CATAC----GTTCA--T--ATT---TA-T----------------GCTAT-------------------------------------------------------------------GAAA---C-------TCT--------------------------T-GATT---------------CTGAATATA----------ACTAAAATT-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGCGGCGT------ATCAATTGC------TTGTATGGTGAAT---------------TCGAAT----TATGTTTTGCATAAAATGC------------AAGAAG----------------------------------------AAGATTATGACGATGAASizeHit CountTotal NormTotal
No Reads
droEle1
TGTTAATCTCTTCGACAA-CT---ACGAC------------CACTTCTCA---------------AC-------TATAATAACACATA-AAAAAGGTTGCCTGGAGTAAATACTACAACTGATTCCTGATTAAAGTCAGGTAGGTGTGTCTGTAAACAAA-----TT----------TT-----------------------------------------------TCTAACACTTTTTTTTCG--CACAC----GTTCA--T--ATA---TG-C----------------GCAAA-------------------------------------------------------------------TAA----C-------TAT--------------------------T-GATT---------------CTGAATACA----------ACTCACCAT-------------------------------------CTT---------------------GGAAACAATTAGGTTGGTGGCGGCGT------ATCAATTGC------TTTTGTGGCGAAC---------------TCGAAT----TATATGTTGAATGAAATGA------------AAGAAG----------------------------------------AAGTCTATGATGATGAASizeHit CountTotal NormTotal
No Reads
droRho1
TGTTAATCTCTTCGCCAA-CT---ACGAC------------CACTTCTCA---------------AC-------TTTAATAACACACATTAAAAGGTTGCCTGGAGTAAATACTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTCTGTCAACAAA-----TT----------A------------------------------------------------AATAACTCT------TCG--CATAC----GTTTA--T--ATT---TA-T----------------GCAAT-------------------------------------------------------------------GAAA---C-------TCT--------------------------T-TATT---------------CTGAATAAA----------TCCCACAAT-------------------------------------TTT---------------------GGAAAAAATTAGGTTGTTGGCGGCGT------ATCAATTGC------TTGTGTGATGAGC---------------TCGAAT----TATATGTTGCATGAAATGC------------AAGAAG----------------------------------------AAGACTATGATGATGAASizeHit CountTotal NormTotal
No Reads
droFic1
TGTTAATCTCTTCGCCAA-CT---ACAAC------------AACTACTCA---------------AC-------TATAATGACACACATTAAAAGGTTGCCTGGAGTAAATACTACAACTGATCTCTGATTA-AGACAGGTAGGTGTGTCTGTCAACAAC---A-TT----------T------------------------------------------------TAAAACTCT------TCG--CATAC----CTCTA--G--ATT---TA-T----------------GCAAT-------------------------------------------------------------------AATG---C-------TTT--------------------------T-GAT----------------TTGAATATA----------ACTGAAATT-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGCGGCGT------ATCAATTGC------TTGTGAGGTGAAT---------------TTGAAT----TATCTGTTGCACGAAATGC------------AAG-------------------------------------------AAGACTGTGATGATGAASizeHit CountTotal NormTotal
No Reads
droKik1
TGTTAATCTCTTCGCCAC-CA---CCAACTAC---------TACTACTCAACAACAAT-AA-----CT-CCGACCATGATA--ACACATTAAAAGGTTGCCTGGAGTAAATACTACAACTGATCTCTGATTAAAGTCAGGTAGGTGGTTCTGTCAA---------AGC---AATT-TC------------------------------------------------TTTTG--CTTC----GTT--TACAC----ACACA--T--AGTATGTA-T----------------ACATT-------------------------------------------------------------------GAAAGCCCTTCCGATTATTGATTGCAA--------------------------------------AAGAATATATCCCAAAATTTCCTG-----------------------------------------------------------------GAACAAAACTAGATAACTGA------------------------------------AAAT---------------GCAAGT----TATGTATTGTATGGAGTAC------------AGGAAGAAGACGA----------------------------AGACGAGGATGACGAGGACGAASizeHit CountTotal NormTotal
No Reads
droAna3
TGTTAATCTCTTCGCCAA-CT---CTTGCAAC------------TCTCCAACC---AACTGCGCAACT-CG---TATGATAACACACTTT-AAAGGTTGCCTGGAACAAATACTACAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTCTTCT----CC-----TC----------T--CGAC-CC---------------------------------------------------------------------TTCTTAT--ACA---TA-TGTAGCGTATCTTGTTCGTAATCCCATAGTACCAC----ACCAT-------ACTAC------------------------------------------TCTGACCAGTGAGCG--AAATCCTAATGCCTCTGCT-GATTAAAATCATAGTTTAATTGCATATT----------ATTTT--TG-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGCAGTGG------CGACATGGCCAGTACCAGT---------------CCCAGT----CCCAATGCCGACTATATGCAAGATCTTGAGCAAGAGGCGGATGAAGACGACGATGATGATGATGATGAGGAGG-TGGAGGAGGAGGAGGAGGACGACGATGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGG-TGGAGGAGGAGGAGGAGGAC.........2717.007010105
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGG-TGGAGGAGGAGGAGGAGGA..........2642.5010000037
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGG-TGGAGGAGGAGGAGGAGG...........2551.809010008
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGAGG-TGGAGGAGGAGGAGGAG............2611.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGG-TGGAGGAGGAGGAGGAGG...........2611.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGG-TGGAGGAGGAGGAGGAGGACG........2511.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGG-TGGAGGAGGAGGAGGAGGA..........2461.006000006
...TAATCTCTTCGCCAA-CT---CTTGCAAC------------T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGG-TGGAGGAGGAGGAGGAGGACG........2611.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGG-TGGAGGAGGAGGAGGAGGA..........2711.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGG-TGGAGGAGGAGGAGGAGGAC.........2421.002000002
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGG-TGGAGGAGGAGGAGGAGGAC.........2521.002000002
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGG-TGGAGGAGGAGGAGGAG............2470.715000005
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGACGACGATGATGATG..........................................2030.331000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAGGAGGACGACGATG..2160.171000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-TGGAGGAGGAGGAGGAGGA..........21190.163100020
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGG-TGGAGGAGGAGG.................19150.132000200
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGG-TGGAGGAGGAGGAGGA.............20160.132000011
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGG-TGGAGGAGGAGGA................18200.102000002
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGG-TGGAGGAGGAGGAGGAGG...........23110.091000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGATGATGATGATGATGA...................................23130.081001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGG-TGGAGGAGGAGGAGGAG............22130.081000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGAGGACGACGA....20150.071000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGG-TGGAGGAGGAGGAGGAGGAA.........25150.071000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGGAGGAGGAGGACG........20180.061100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGG-TGGAGGAGGAGGAG...............18200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGG-TGGAGGAGGAGGAGG..............19200.051000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGGAGGAGGACGA.......18200.051000010
droBip1
GGTTAATCTCTTCGCCAA-CT---CTCGCAACTCTC----CAAC------------ATCTACGCAAC-------TATGATAACACACTTTAAAAGGTTGCCTGGAACAAATACTTCAACTGATCTCTGATTAAAGTCAGGTAGGTGTGTCCCTCGACATC-----TG-------------------------------------------------------------------------------------------------------------TACGCTATCTTGTTCGTAATCCC----TCCCACCCACA-CAT-------AC-AC------------------------------------------T-TGACTCGTGAGCG--AAAT-CTAATGCCTCTGCT-GGTTAGAATCACAGT----TT-AACAGA----------GTTTTC-GT-------------------------------------TTT---------------------GGAAACAATTAGGTTGGTGGCGGTGGCGATGTGCCCATGGT------CTGCATGGCGAATCCCAGTCCCAGTGAATCGCAA----GATCTAGAGCAAGATCTTGAGC---------AAGATG----------------------------------------AAGAGTACGAGGA----SizeHit CountTotal NormTotal
No Reads
dp5
TGTTAATCTCTTCGCCAA-CC---ACAACTAC---T----CAACTACTCA---------------AC-------TTTAATAACAAACATTAAAAGGTTGCCTGGAATAAGTACTACAACTGATCTCTGATTAAAGCCAGGTAGGTGT--CCGTCAACACA-----TT----------T--TGAAT--------------------------------------------------------------ATAC----ATT---------------T-TGAACCTATATTTGTAGCAATAAT----GCCCATGCATA-AGCAGGCTATAA-AC---------------------------------GAGA---T-------TTT--------------------------T-TA---------TTGTTGTATTGAATAAT---------TACTTCGAAT-------------------------------------TTT---------------------GGTAACAATTAGGTTGGTGGCGGCAT------GCTAAAAAT------TTGTTTATTGAAT---------------ATGAAT----TTAAT---------ATC---------------TGAAGAAGACGATGGCGATGGCGATAGCGATG-G---CGATGACAATGACGATGACGATGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................ACAACTGATCTCTGATTAAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAGGTTGGTGGCGGCAT------G..................................................................................................................................................2111.0010000000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATGACGATGACGAT...1840.2510100000000
droPer2
TGTTAATCTCTTCGCCAA-CC---ACAACTAC---T----CAACTACTCA---------------AC-------TTTAATAACAAACATTAAAAGGTTGCCTGGAATAAGTACTACAACTGATCTCTGATTAAAGCCAGGTAGGTGT--CCGTCAACACA-----TT----------T--TGAAT--------------------------------------------------------------ATAC----ATT---------------T-TGAACATATATTTGTAGCAATAAT----GCCCATGCATA-AGCAAGCTATAA-AC---------------------------------GAGA---T-------TTT--------------------------T-TA---------TTGTTGTATTGAATAAT---------TACTTCGAAT-------------------------------------TTT---------------------GGTAACAATTAGGTTGGTGGCGGCAT------GCTAAATAT------TTGTTTATTGAAT---------------ATGAAT----TTAAT---------ATC---------------TGAAGAAGACGATGGCGATGGCGATAGCGATG-G---CGATGGCGATGACGATGACGATGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG-G---CGATGGCGATGACGAT.........21180.061000001
droWil2
TGTTAATCTCTTCGGCAA-CC---ACAACTAC------------TA--CAACCACA---------------------AAAAACAAACTATAACAGTTTGCCTGGAATAAATACTACAACTGATCTCTGATTAAAGCAAGGTAGGTCA-----------AA-----TT----------TTTTGTATC----------------------------------------ATGCATTCC------A-----------------------------------TACAAACATTTGT---TATAC--------------------------------GATAAAAACGAACTAAAAGTACATATATTGTATGAGT----------------------------------------------------------------------------------TTTTTTT-------------------------------------TTT---------------------GCGAACAATTAGGTTGGTGGCGGCGTTTTCA-TCCTATTGT----ACT--T--------T---------------TAAAAA----TATTAGT-------TTC---------------TAAAGTCG-------------------------------------CATAACGT----GTTAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................CTACAACTGATCTCTGATTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
......................................................................................................................CTGATCTCTGATTAAAGCAAGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
droVir3
TGTTAATCTCTTCGTCAA------ACAACTAC---T---ACAACATCTCAACCACAAA--------CTACAAACCATAACAAA--ATCGTAAAAGGTTGCCTGGAATAAATACTACAACTGATCTCTGATTAAAGCCAGGTAGGTGA--TCATCAT--------AT-CTAC--------------CATT-AAACATTATTTAAGTACTGTAT-------ATACAA-------------------TTTTTT-TATA---------------------------------------------------------------------------GAGAATAACGAATT-------------------A----------------A--------------------------T-GATT---------------TA--ATAAA----------------------------------TATTATGTGAATAA----TGTTATTGGTCACTTCCTACAAAAAAAAAAAAACAAATAGGTTGGTGGC---AT------CTCAATTGT------ATATGTTGTAAGC---------------TCAAAT----TATTTAGTACAAGATGGCGG------------TGA----------------------ATCTAAACA---TGATAATAATGATGATGATGATGAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................CTGATTAAAGCCAGGTAGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000010000000000000000000000000000100
....................................................................................................................AACTGATCTCTGATTAAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGTACAAGATGGCGG------------TGA----------------------.....................................2111.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................TGATTAAAGCCAGGTAGGTGA--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................TACTACAACTGATCTCTGATTAAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------ATATGTTGTAAGC---------------TCAAAT----TATTTAG.......................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................ACTACAACTGATCTCTGATTAAAGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
.............................................................................AACAAA--ATCGTAAAAGGTTGCCTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................ATAAATACTACAACTGATCTCTGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010000000000000000000000000000000000000000000000000000000000
.................................................................................................................TACAACTGATCTCTGATTAAAGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010000000000000000000000000000000000000000000000000000000000
...TAATCTCTTCGTCAA------ACAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................AAAGCCAGGTAGGTGA--TC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAATAGGTTGGTGGC---A..........................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TGATAATAATGATGATGATGA....2240.502000000000000000000000000002000000000000000000000000000000000000
.................................................................................................TGCCTGGAATAAATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1530.331000000000000000000000000000000000000000000000001000000000000000
.................................................................................................TGCCTGGAATAAATAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16170.061000000000000000000000000000000000000000000000001000000000000000
droMoj3
TGTTAATCTCTTCGTCAAACCAAACCAACTAC---TACAACAACATCTCAACCACAAA-CT--CTACTACAAACCATAACAAAAATCGTAAAAAGGTTGCCTGGAATAAATACTACAACTGATCTCTGATTAAAGCCAGGTAGGTGCCT--ACT----CA---TAT-CTAC--------------CATTTTAACATTCCTTAAGTC-TCTATCAGTTGTAATCGA-------------------TGTATC-TATA---------------------------------------------------------------------------G--------------------------------------------------------CTAAAT--AAA-------------------------------TGTATATC---------TAGATCAAATTATGATTATAATTAAATTGGTGTAAATAATATATGTTATA--------------TACTATAATATACGCATAGGTTGGTGGC---GT------CTCAATTGT------GTACGTTGTAAAC---------------TCGAAT----TATGTTGCGCCAGGCGGCGA------------TCC----------------------AGCTAAGCC---TGGTGGCAATGATGATGATGATGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGCC---TGGTGGCAATGATGA..........2311.001000010
droGri2
TGTTAATCTCTTCGCCAAACA---ACAACAAC---TACAACAACATCTCAACCACAAT--------CTACAAACCATAACAAA--ATCGTAAAAGGTTGCCTGGAATAAATACTACAACTGATCTCTGATTAAAGCCAGGTAGGTGC--CCACCAA--------AT-CCGCAAT---T--TACAT-----TAACATTTCCTAAGTA-TGT-T-------GTACATCTTT--------------------------ATTCATTTATTGA---CA-T----------------ACAAT------------------------------------------------------------------------------------------------------------------------------------GTGTAAGTA----------ATTAATTTT-------------------------------------AATGGTCACTTCCT----------GATAACAATTAGGTTTGTGAC---AT------TTCAATTGT------TTATG-------------------------------------TTATACAAGATATTGA------------A------------------------------T-C---CGATGATGATAATGATGATGATGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:31 PM