ID:

dsi_7018

 Coordinate:

2l:5744692-5744910 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.2 -8.1 -8.1 -7.8

Flybase annnotation

five_prime_UTR [2l_5744911_5744982_+]; exon [2l_5744911_5745073_+]; five_prime_UTR [2l_5744564_5744691_+]; exon [2l_5744564_5744691_+]; intron [2l_5744692_5744910_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAATGCAGACGACCAACCGGATACATGGTTGAATCAGACCAATCCACAATGTAAATATTAAATGGAAGCTGACGCAGGCAATTTTGCAGCACAGTGGCGTCATACATATTTCTCTTTGTTGTTTTTCAATGGTCTGCAAATACGTATAGTATAGTATTAGTGAAAAATGAGACTTGTGCCTGACGCATGAACTAATCTATTCTAGACACATCCCACCGAGCTGGTGAATCTAAGCCTTGATTACTAAACTGTCATTTCCACTGTTCCAGCACCAAGGAGTCAACCAGAGCACCGGATAAATCGCATGGGATAAAAACAC
***************************************************************************************************************************...((..............(((...(((((((.(((........))).))).))))...)))..))********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M053
female body
 O002
Head
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................................................................................................................................................TTCCACTGTTCCAGCACCAAG........................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................TTTCAATGGTCTGCAAATAC................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................GAGACTTGTGCCTGACGCATG.................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................TTCAATGGTCTGCAAATACGT.............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGAGCTGGTGAATCTAAGCCT.................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................AAATGGAAGCTGACGCAGGCA............................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................GCACCGGATAAATCGCATGGG.......... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................CCCCAGCACCGGATCAATCG................ 20 3 2 0.50 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................................CAAGGAGTCAAACAGA............................... 16 1 6 0.33 2 0 0 0 0 0 0 0 1 1
......................................................................................................................................................................................................................................................................................................GATGATTCGCATGGGATA....... 18 2 4 0.25 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................................GCATGGGATAGAAAC.. 15 1 5 0.20 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................GACACATACCGCCGAGGT................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0
......................................................ATATTAACTGGAACCTGTC...................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................GAATAGTATTAGTGA............................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0
..........................................................................................................AATTTGTCTTTCTTGTTTTTCA............................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

ATTACGTCTGCTGGTTGGCCTATGTACCAACTTAGTCTGGTTAGGTGTTACATTTATAATTTACCTTCGACTGCGTCCGTTAAAACGTCGTGTCACCGCAGTATGTATAAAGAGAAACAACAAAAAGTTACCAGACGTTTATGCATATCATATCATAATCACTTTTTACTCTGAACACGGACTGCGTACTTGATTAGATAAGATCTGTGTAGGGTGGCTCGACCACTTAGATTCGGAACTAATGATTTGACAGTAAAGGTGACAAGGTCGTGGTTCCTCAGTTGGTCTCGTGGCCTATTTAGCGTACCCTATTTTTGTG
**********************************************************************************************************************************...((..............(((...(((((((.(((........))).))).))))...)))..))*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 O002
Head
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................TTACCAGACGTTTATGCATAT........................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....CGTCTGCTGGTTGGCCTATGTA..................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CCAGACGTTTATGCATATCAT........................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TTAGATTCGGAACTAATGATT........................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................CTCAGTTGGTCTCGTGGCCTA...................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TACCAGACGTTTATGCATATC.......................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......TCTGCAGTTTGGGCTATGTA..................................................................................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................ACACGGGCGGCGTACTTG............................................................................................................................... 18 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TGGTTGTTCAGTTGGTCACGT............................ 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TCTTCAGTAGGTCTCGTG........................... 18 2 9 0.22 2 0 0 0 0 0 0 0 0 1 1 0
.........................................................................................................................AAAAAGTTACTAGACGT..................................................................................................................................................................................... 17 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................GTGGTTCGTCAGTTGTTC................................ 18 2 10 0.20 2 2 0 0 0 0 0 0 0 0 0 0
...........TGGTTGGCCTGTGTA..................................................................................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................AGTTGGTCTCGTGTCTTA...................... 18 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
......TCTGCTCGTAGGCCTAT........................................................................................................................................................................................................................................................................................................ 17 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0
......................TGTAGCTACTTAGTCTGTTT..................................................................................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................GTTCCTCTGTTGGTC................................ 15 1 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................TTCGAGACTAATGATTTGC..................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TGGGATCGAGGCCTATTT................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AGGTGGGAAGGTCGTGG.............................................. 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................AAAAAAAAGTTACAAGACGTAT................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:5744642-5744960 + dsi_7018 TAATG-----CAGACGACCAACCGGATACATG---GTTGAATCAGA--CCAATCCA-CA----ATGTAAATATTAAATGGAAGCTGACGCA------GGCAATTTT-GCAG---------CACAGTGGCGTCATACATA-TTTCTCTTTGTTGTT---TTTCAATGGTCTGCAAATACG------------TATAGTATAGTATTAGTGAAAAATGAGACTTGTGCCTGACGCATG--AA------------CTAATCTATTCTAGACACATCCCACC---GAGC---------------T---G------------------------------------------------------------------GTGAATCTAAGCCT-----TGATTACTA---A---------------------------------ACTGTCATTTCCACTGTT-CCAGCACCAAGGAGTCAAC----CAGAGCACCGGATAAATCGCATGGGATAAAAACAC-
droSec2 scaffold_5:4020243-4020549 + TAATG-----CAGACGACCAACCGGATACATG---TTTGAATCAGA--CCAATCCA-CA----ATGTAAATATTG-----------ACGCA------GGCAATTTT-GCAG---------AACAGTGGCGTCATACATA-TTTCTCTTTGTTGTT---TTTCAATGGTCTGCAAATACG------------TATAGTATAG-ATTAGTGAAAAATGAGACTTGTGCCTGACGCATG--AA------------CTAATCTATTCTAGACACATCCCACT---GAGC---------------T---G------------------------------------------------------------------GTGCATCTAAGCCT-----TGATTACTA---A---------------------------------ACTGTCATTTCCACTGTT-CCAGCACCAAGGAGTCAAC----CAGAGCACCGAATAAATCGCATGGGATAAAAACAC-
dm3 chr2L:5949562-5949877 + TAATG-----CAGACGACCAACTGGATACATG---ATTGAATCCAG--CCGAACCA-CA----ATGTAAATATTAAATGGAAGCTGACGCA------GGCAGTTTT-GCAG---------CACAGTGGCGTCATACATA-TTTCTCTTTGTTGTT---TTTCAATGGTCTGCAAATACG------------TATAGTATAGTATTAGTGAAAAATGAGACTTGTGCCTGACGCATT--AG------------CTAATCTGTCCTGGACACATTACCCC---AAGG---------------T---G------------------------------------------------------------------GGGCATCTAAATCT-----TGATAG-----TA---------------------------------ACAGCCATTT-CACTCTT-TCAGCACCAAGGAGTCATC----CAGAGCACCGAATAAATCGCATGGGATAAAAACAC-
droEre2 scaffold_4929:6034792-6035108 + TAATG-----CTGCCGACCATCTGGATACATG---ACTAAATCAGG--CCAAAGCA-CA----ATGTAAATATTAAATGGGATATAATGCA------GGCGATTTC-GCAG---------CGCAGTGGCGTCATACATA-TTTCTCTTTGTTGTT---TTTCTATGGACTGCAAATGCG------------TATAGTATAGTATTAGTGAAAAATGAGTCTTGTGCCTGAGGCATT--AG------------CTAATCTATCCTGGACAATT-TCACT---GGTC---------------T---G------------------------------------------------------------------GTTCATCTAAGCCT-----TGGTAG---AGTA---------------------------------ACA-CCATTT-CACTGTTCCCAGCACCAACAAGTCATC----CAGCACAAGGAATAAATCGCATGGGATAAAAGCAC-
droYak3 2L:13246611-13246917 - TAATG-----CTGTCGACCATCTGGATACATG---ACTAAATCAGG--CCAAACCA-CA----ATGTAAATATTAAATGGGATCTAACGTA------GTCGAACTC-GCAG---------CGCAGTGTCGTCATACATA-TTTCTCTTTGTTGTT---TTTCGATCGACTGCGAATACG------------TATAGTATACTAGTATTGAAAAATGAGACTTGTGCCTGAGGCATT--AG------------CTAATCTATCCTGGACA-------------GGC---------------T---G------------------------------------------------------------------GTGCATCTACACCT-----AGATAG-----TA---------------------------------ACACCTATTT-CACTGTTCCCAGCACCGACGCGTCATC----CAGAGCAACGAATAAATCGCATGGGATAGAAGCAC-
droEug1 scf7180000409004:15516-15823 - TAATG-----GCGTTGGACCTATAGATATGTG---ACAGTATCAATTGTGGGTTAG-CA----ATGTAAGTATTGAACGCGCCTTGTCGCA------GGTATTTCC-GCTG---------AACAGTGGCATCATAAATA-TTTTCCTTTGTTGAT---TTTCGATGGACTGCTAATA-----------------------ATATAGATGGAAAAACAGAAATGTGCCTAACGCATT--TG------------TTAATCTGCGTTAGACACATACAAAT---GTA---------------TCTCAT------------------------------------------------------------------------GTAAATGTTCACCTGATAG-----TA---------------------------------ACTAGAATTT-TACAGTC-GCAGCAGCTACGATTATCA----TAGAACAGGGA-AATATCGCATGGGATAAGGACAC-
droBia1 scf7180000301629:45155-45205 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT-CCAGCA-------GTTACTCAAAACAAGTAACAGGTATAACGCATGGAATA---ACAC-
droTak1 scf7180000415103:440957-441326 - TAATG-----CTGACGTT--TCTAGATGTTTG---ACTAATCCAAG--CGAAACCACCAATGTATGTAAATGTGAAACGGGCGTTAACAAA------GGTACTTCT-GCAG---------TGTAGTAATGTCATTCGAGATTTGTTATTGTCGAT---CT-------GCTGCAAATAT--------------------------------------AGAGTTGAGCCTAACGCATTTTTG------------CTAATCTGCCTTGGGCATATACCACCTTTATAATGGGGTCTTAAACAAGTCGCTTAGAGCTAAATTTGGGTACAATTTATATTGATGTAAAAAATAATTTAGTTCGAAATCAGGTTGAAGAGATTCTATGGCA-----CCGCCA---AATA---------------------------------ACTAATATTT-CACAGTC-GCTGCA-----GTGTCACT----CAGAACAAGGAATTTATCGCATGGGATAAA---AC-
droEle1 scf7180000491120:15300-15588 - TAATG-----CTATACACCTTCTGGACATACACACAGTCTATCCAG--CCAAGGCA-AA----ATGAATTTATAAAACGGGCGTTATCGCA------GGTATCTC-----A---------AGAAGTGGCGTCATAGATA-TTTTCCTTTGTTGTTTT-TTTCGATAAACAGCAATTT---------------------TATTTGCTGTGAAACTAGAGGCTTGTGCCTAACGCATT--CG------------CTGATCTGTTTTTGACATATACCTCT---GCGC---------------TT--T------------------------------------------------------------------GTG---------------------------TA---------------------------------TTTCGTACTT-TACAGTC-GCAGCACC---GAGCCATC----TAAATCGAGGAACACATCGCATGGGATAAAACTAC-
droRho1 scf7180000761581:139-435 + TATTG-----CTATACACCTACCGTATATACATATAGTAAATCCAA--CTAAGCCA-CA----ATGTACATATAAGGCAGACGTTATCGAA------GGTATTT-----AA---------GATAATGGCGTCATAAATA-TTTCCCTTTGTTGTT---TT--GATAGACTGCAAATA---------------------TATTAGTTATGAAAATAGTGACTTGTGCCTAACGCATT-TCG------------ATGATCTGTCTTCGACTCATACATCT---GCGG---------------T---T------------------------------------------------------------------GTGAG--TGAGCCT-----TGATAA-----TA---------------------------------GCTAATGTTT-CACTTTC-GCAGC------GAGTCATT----CAGAGCAAGGAATACATTGGATGGGATAGAAGTGC-
droFic1 scf7180000453813:98925-99219 - TAATG-----CTTGTGAGCTGTAGAATATATG---ACTAAATCAGA--CCAAACCG-CA----ACGTAAGTATCAACCGGACGTAATCGCA------GATATTTTC-ACAG---------GGTAGTA--GTCATACAAA-A-TCTCTTTGTTGTT---T-TCGATGCGCTGCATATACAAATGTACATACATA-TGTATATTAGTTGCGAAAATAAAGACTTGTGCCTAACGCATT-TTG------------CTGATCTGCCCC-----------C---TCATAT-------------------T------------------------------------------------------------------GAAATCGTAAGCCC-----TGATAA-----TA---------------------------------G-------TT-CAATATTTGCAGGAACATCGATTCTT---------------AAACAATCGCATGGGATAAAAATAA-
droKik1 scf7180000302382:578689-578912 - CAATG-----ATCCCGCT--GCCG--------------------CT--GCAAACCA-CA----GAATAAATATAGAGCTGG----------------TGCG-TCAATATGACGTG-----CCTAACGTCGTCATGCATA-TTTTTCTTTGTTGTC---TTCC-A-CGGCTGCAGACAT-------------TAGTGTATATTAGTGTTGAGACTCGAATCTGGTGCACAACGCATT--TGCCCGAAAAA--TCTAGTTTTACCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGG------AATTCATT----TAATTTCAGTAATTCATCGCATGGGA----------
droAna3 scaffold_12916:11362436-11362653 + TGC-----------AGACTCATTAGATGCACG---ACTAAATCAGC--CTGTGCCA-CA----ATGTAAATACAAATTTTG----------------GGC-GTTTC-ACAGCT-------GACTGCAGCGTCATACGCA-GTTGCCTTTGTTGTT---CTGG-----------AATTCC------------TATGG---------CGTGGAATTAGAATCTGGAGCATTACGCATC--CGAGCCAAACTTCTCTAATTATTCCTGAACATTTTCA--------------------------------------------------------------------------------------------------------------------GATAG-----GG---------------------------------A--------------------------------------------------------TTTGCATG--CTGGAGCCACA
droBip1 scf7180000396572:1029319-1029555 + TTATG-----ATGCAGACTCATTAGATGCATG---ACTAAATCAGC--CTGTGCCA-TA----ATGTAAATACAAATTTT---------------GGGGCA-TTTCAACGGCT-------GGCTATAGCGTCATACGCA-GTTGCCTTTGTTGTT---TTGGAATTCA-TCCGAAC-------------------ATGCATTAGTCGTGGACATAGAAACTGGTGCATTACGCATC--AGAAGCACAATGCTCTAATTATTCCTGAACATTTGCA--------------------------------------------------------------------------------------------------------------------GATAA-----GGACTTGGA--------------------------------------------------------------------------------------GCGTG--TTG---GAGC-
dp5 4_group1:343157-343436 - TCATCAAAAAGCGCAGCTTCATACGATCGGTG---ATGCAATAAAA--GAAAATC--CT----ATGGAAATCTATAATTAAAACGGAAAAATGTTGGTTTA-TTATTAAGACCTGCCACCACAAATGGCGTCATA-----ATTCTCTTTGTTGTTGTTTTTG--TGCACCCAAAACA--TACG------------------------TGCT-AAAAAGATTTGTGTCTGAAA-------------------------------------ATACCCGAT---GCA---------------TATTATATGGAAATGACTT-----------------------------------------------------------------------------------------GGGGAAAAATGAATATCTAAAGAATATCAAAACAAAATT-CAAAGTC-ACAGC-----------------------------------------TGATTTGTACCC-
droPer2 scaffold_1:338632-338904 - AAAAA-----CCGCAGCTTCATACGATCGGTG---ATGCAATAAAA--GAAAATC--CT----ATGGAAATCTATAATTAAAACGGAAAAATGTTGGTTTA-TTATTAAGACCTGCCACCACAAATGGCGTCATA-----ATTCTCTTTGTTGTTGTTTTTG--TGCACCCAAAACA--TACG------------------------TGCT-AAAAAGATTTGTGTCTGAAA-------------------------------------ATACCCGAT---GCA---------------TATTATATGGAGATGACTT-----------------------------------------------------------------------------------------GGGGAAAAATGAATATCTAAAGAATATCAAAACAAAATT-CAAAGTC-ACAGC------------------------------TGATTT-------------GTAC-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAATG-----CAGACGACCAACCGGATACATG---GTTGAATCAGA--CCAATCCA-CA----ATGTAAATATTAAATGGAAGCTGACGCA------GGCAATTTT-GCAG---------CACAGTGGCGTCATACATA-TTTCTCTTTGTTGTT---TTTCAATGGTCTGCAAATACG------------TATAGTATAGTATTAGTGAAAAATGAGACTTGTGCCTGACGCATG--AA------------CTAATCTATTCTAGACACATCCCACC---GAGC---------------T---G------------------------------------------------------------------GTGAATCTAAGCCT-----TGATTACTA---A---------------------------------ACTGTCATTTCCACTGTT-CCAGCACCAAGGAGTCAAC----CAGAGCACCGGATAAATCGCATGGGATAAAAACAC-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCACTGTT-CCAGCACCAAG................................................2111.00100000100000000000
..............................................................................................................................................................TTTCAATGGTCTGCAAATAC................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.......................................................................................................................................................................................................................GAGACTTGTGCCTGACGCATG--....................................................................................................................................................................................................................................................................................2111.00101000000000000000
...............................................................................................................................................................TTCAATGGTCTGCAAATACG------------T..................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.....................................................................................................................................................................................................................................................................................C---GAGC---------------T---G------------------------------------------------------------------GTGAATCTAAGCCT-----............................................................................................................................2111.00110000000000000000
..........................................................................AAATGGAAGCTGACGCA------GGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCGGATAAATCGCATGGG...........2111.00100000000000100000
droSec2
TAATG-----CAGACGACCAACCGGATACATG---TTTGAATCAGA--CCAATCCA-CA----ATGTAAATATTG-----------ACGCA------GGCAATTTT-GCAG---------AACAGTGGCGTCATACATA-TTTCTCTTTGTTGTT---TTTCAATGGTCTGCAAATACG------------TATAGTATAG-ATTAGTGAAAAATGAGACTTGTGCCTGACGCATG--AA------------CTAATCTATTCTAGACACATCCCACT---GAGC---------------T---G------------------------------------------------------------------GTGCATCTAAGCCT-----TGATTACTA---A---------------------------------ACTGTCATTTCCACTGTT-CCAGCACCAAGGAGTCAAC----CAGAGCACCGAATAAATCGCATGGGATAAAAACAC-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................TAGACACATCCCACT---GAGC---------------T---G------------------------------------------------------------------...............................................................................................................................................2111.0010100
..................................................................................................................................................................................................................................................................................CACT---GAGC---------------T---G------------------------------------------------------------------GTGCATCTA......................................................................................................................................1911.0010100
........................................................................................................................................................................................................................................................................AGACACATCCCACT---GAGC---------------T---G------------------------------------------------------------------GT.............................................................................................................................................2211.0010100
..........................................................................................................................................................................................................................ACTTGTGCCTGACGCATG--A...................................................................................................................................................................................................................................................................................1911.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----CAGAGCACCGAATAAATCGCATG.............2611.0010010
.................................................................................................GGCAATTTT-GCAG---------AACAGTGGCGTCA.............................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
.....................................................................................................................................................................................................ATAG-ATTAGTGAAAAATGAGT.......................................................................................................................................................................................................................................................................................................2111.0010100
.....................................................................................................................................................................................................ATAG-ATTAGTGAAAAATGA.........................................................................................................................................................................................................................................................................................................1911.0010100
............................................................................................................................................................................................................TAGTGAAAAATGAGACTTGTG.................................................................................................................................................................................................................................................................................................2111.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCACCGAATAAATCGCA...............2011.0010001
....................................................................................................................................................................................................................................................................................CT---GAGC---------------T---G------------------------------------------------------------------GTGCATCTAAGCC..................................................................................................................................2111.0010100
dm3
TAATG-----CAGACGACCAACTGGATACATG---ATTGAATCCAG--CCGAACCA-CA----ATGTAAATATTAAATGGAAGCTGACGCA------GGCAGTTTT-GCAG---------CACAGTGGCGTCATACATA-TTTCTCTTTGTTGTT---TTTCAATGGTCTGCAAATACG------------TATAGTATAGTATTAGTGAAAAATGAGACTTGTGCCTGACGCATT--AG------------CTAATCTGTCCTGGACACATTACCCC---AAGG---------------T---G------------------------------------------------------------------GGGCATCTAAATCT-----TGATAG-----TA---------------------------------ACAGCCATTT-CACTCTT-TCAGCACCAAGGAGTCATC----CAGAGCACCGAATAAATCGCATGGGATAAAAACAC-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCGCATGGGATAAAAAC...2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................AATGGTCTGCAAATACG------------TA.................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
..........................TACATG---ATTGAATCCAG--CCGAACCA-C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CATG---ATTGAATCCAG--CCGAACCA-CA----AT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCACCGAATAAATCGCATGGGA..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCATTT-CACTCTT-TCAGCACCA..................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAATCGCATGGGATAAAAAC...2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................G---ATTGAATCCAG--CCGAACCA-CA----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCATGGGATAAAAACA..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................CTGACGCATT--AG------------CTAATCTG..............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..ATG-----CAGACGACCAACTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................AATATTAAATGGAAGCTGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----CAGAGCACCGAATAAATCGC................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................ATAGTATTAGTGAAAAAT...........................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..............................TG---ATTGAATCCAG--CCGAACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................ACACATTACCCC---AAGG---------------T---G------------------------------------------------------------------GGGCATC........................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAATAAATCGCATGA............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ACATG---ATTGAATCCAG--CCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................TCCAG--CCGAACCA-CA----ATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-CACTCTT-TCAGCACACC.................................................20190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TAATG-----CTGCCGACCATCTGGATACATG---ACTAAATCAGG--CCAAAGCA-CA----ATGTAAATATTAAATGGGATATAATGCA------GGCGATTTC-GCAG---------CGCAGTGGCGTCATACATA-TTTCTCTTTGTTGTT---TTTCTATGGACTGCAAATGCG------------TATAGTATAGTATTAGTGAAAAATGAGTCTTGTGCCTGAGGCATT--AG------------CTAATCTATCCTGGACAATT-TCACT---GGTC---------------T---G------------------------------------------------------------------GTTCATCTAAGCCT-----TGGTAG---AGTA---------------------------------ACA-CCATTT-CACTGTTCCCAGCACCAACAAGTCATC----CAGCACAAGGAATAAATCGCATGGGATAAAAGCAC-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................GGTC---------------T---G------------------------------------------------------------------GTTCATCTAAGCCT-----TGGTAG---AGT................................................................................................................2918.0080000008
................ACCATCTGGATACATG---ACTAAATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
droYak3
TAATG-----CTGTCGACCATCTGGATACATG---ACTAAATCAGG--CCAAACCA-CA----ATGTAAATATTAAATGGGATCTAACGTA------GTCGAACTC-GCAG---------CGCAGTGTCGTCATACATA-TTTCTCTTTGTTGTT---TTTCGATCGACTGCGAATACG------------TATAGTATACTAGTATTGAAAAATGAGACTTGTGCCTGAGGCATT--AG------------CTAATCTATCCTGGACA-------------GGC---------------T---G------------------------------------------------------------------GTGCATCTACACCT-----AGATAG-----TA---------------------------------ACACCTATTT-CACTGTTCCCAGCACCGACGCGTCATC----CAGAGCAACGAATAAATCGCATGGGATAGAAGCAC-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................TTGAAAAATGAGACTTGTGCC...............................................................................................................................................................................................................................................................................................2111.00110000000000
....................................................................................................GAACTC-GCAG---------CGCAGTGTCGTC..............................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATC----CAGAGCAACGAATAAAT...................2111.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACGAATAAATCGCATGGGA..........2411.00100100000000
....................................CTAAATCAGG--CCAAACCA-CA----A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
droEug1
TAATG-----GCGTTGGACCTATAGATATGTG---ACAGTATCAATTGTGGGTTAG-CA----ATGTAAGTATTGAACGCGCCTTGTCGCA------GGTATTTCC-GCTG---------AACAGTGGCATCATAAATA-TTTTCCTTTGTTGAT---TTTCGATGGACTGCTAATA-----------------------ATATAGATGGAAAAACAGAAATGTGCCTAACGCATT--TG------------TTAATCTGCGTTAGACACATACAAAT---GTA---------------TCTCAT------------------------------------------------------------------------GTAAATGTTCACCTGATAG-----TA---------------------------------ACTAGAATTT-TACAGTC-GCAGCAGCTACGATTATCA----TAGAACAGGGA-AATATCGCATGGGATAAGGACAC-SizeHit CountTotal NormTotal
No Reads
droBia1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT-CCAGCA-------GTTACTCAAAACAAGTAACAGGTATAACGCATGGAATA---ACAC-SizeHit CountTotal NormTotal
No Reads
droTak1
TAATG-----CTGACGTT--TCTAGATGTTTG---ACTAATCCAAG--CGAAACCACCAATGTATGTAAATGTGAAACGGGCGTTAACAAA------GGTACTTCT-GCAG---------TGTAGTAATGTCATTCGAGATTTGTTATTGTCGAT---CT-------GCTGCAAATAT--------------------------------------AGAGTTGAGCCTAACGCATTTTTG------------CTAATCTGCCTTGGGCATATACCACCTTTATAATGGGGTCTTAAACAAGTCGCTTAGAGCTAAATTTGGGTACAATTTATATTGATGTAAAAAATAATTTAGTTCGAAATCAGGTTGAAGAGATTCTATGGCA-----CCGCCA---AATA---------------------------------ACTAATATTT-CACAGTC-GCTGCA-----GTGTCACT----CAGAACAAGGAATTTATCGCATGGGATAAA---AC-SizeHit CountTotal NormTotal
No Reads
droEle1
TAATG-----CTATACACCTTCTGGACATACACACAGTCTATCCAG--CCAAGGCA-AA----ATGAATTTATAAAACGGGCGTTATCGCA------GGTATCTC-----A---------AGAAGTGGCGTCATAGATA-TTTTCCTTTGTTGTTTT-TTTCGATAAACAGCAATTT---------------------TATTTGCTGTGAAACTAGAGGCTTGTGCCTAACGCATT--CG------------CTGATCTGTTTTTGACATATACCTCT---GCGC---------------TT--T------------------------------------------------------------------GTG---------------------------TA---------------------------------TTTCGTACTT-TACAGTC-GCAGCACC---GAGCCATC----TAAATCGAGGAACACATCGCATGGGATAAAACTAC-SizeHit CountTotal NormTotal
No Reads
droRho1
TATTG-----CTATACACCTACCGTATATACATATAGTAAATCCAA--CTAAGCCA-CA----ATGTACATATAAGGCAGACGTTATCGAA------GGTATTT-----AA---------GATAATGGCGTCATAAATA-TTTCCCTTTGTTGTT---TT--GATAGACTGCAAATA---------------------TATTAGTTATGAAAATAGTGACTTGTGCCTAACGCATT-TCG------------ATGATCTGTCTTCGACTCATACATCT---GCGG---------------T---T------------------------------------------------------------------GTGAG--TGAGCCT-----TGATAA-----TA---------------------------------GCTAATGTTT-CACTTTC-GCAGC------GAGTCATT----CAGAGCAAGGAATACATTGGATGGGATAGAAGTGC-SizeHit CountTotal NormTotal
No Reads
droFic1
TAATG-----CTTGTGAGCTGTAGAATATATG---ACTAAATCAGA--CCAAACCG-CA----ACGTAAGTATCAACCGGACGTAATCGCA------GATATTTTC-ACAG---------GGTAGTA--GTCATACAAA-A-TCTCTTTGTTGTT---T-TCGATGCGCTGCATATACAAATGTACATACATA-TGTATATTAGTTGCGAAAATAAAGACTTGTGCCTAACGCATT-TTG------------CTGATCTGCCCC-----------C---TCATAT-------------------T------------------------------------------------------------------GAAATCGTAAGCCC-----TGATAA-----TA---------------------------------G-------TT-CAATATTTGCAGGAACATCGATTCTT---------------AAACAATCGCATGGGATAAAAATAA-SizeHit CountTotal NormTotal
No Reads
droKik1
CAATG-----ATCCCGCT--GCCG--------------------CT--GCAAACCA-CA----GAATAAATATAGAGCTGG----------------TGCG-TCAATATGACGTG-----CCTAACGTCGTCATGCATA-TTTTTCTTTGTTGTC---TTCC-A-CGGCTGCAGACAT-------------TAGTGTATATTAGTGTTGAGACTCGAATCTGGTGCACAACGCATT--TGCCCGAAAAA--TCTAGTTTTACCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGG------AATTCATT----TAATTTCAGTAATTCATCGCATGGGA----------SizeHit CountTotal NormTotal
No Reads
droAna3
TGC-----------AGACTCATTAGATGCACG---ACTAAATCAGC--CTGTGCCA-CA----ATGTAAATACAAATTTTG----------------GGC-GTTTC-ACAGCT-------GACTGCAGCGTCATACGCA-GTTGCCTTTGTTGTT---CTGG-----------AATTCC------------TATGG---------CGTGGAATTAGAATCTGGAGCATTACGCATC--CGAGCCAAACTTCTCTAATTATTCCTGAACATTTTCA--------------------------------------------------------------------------------------------------------------------GATAG-----GG---------------------------------A--------------------------------------------------------TTTGCATG--CTGGAGCCACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTATG-----ATGCAGACTCATTAGATGCATG---ACTAAATCAGC--CTGTGCCA-TA----ATGTAAATACAAATTTT---------------GGGGCA-TTTCAACGGCT-------GGCTATAGCGTCATACGCA-GTTGCCTTTGTTGTT---TTGGAATTCA-TCCGAAC-------------------ATGCATTAGTCGTGGACATAGAAACTGGTGCATTACGCATC--AGAAGCACAATGCTCTAATTATTCCTGAACATTTGCA--------------------------------------------------------------------------------------------------------------------GATAA-----GGACTTGGA--------------------------------------------------------------------------------------GCGTG--TTG---GAGC-SizeHit CountTotal NormTotal
No Reads
dp5
TCATCAAAAAGCGCAGCTTCATACGATCGGTG---ATGCAATAAAA--GAAAATC--CT----ATGGAAATCTATAATTAAAACGGAAAAATGTTGGTTTA-TTATTAAGACCTGCCACCACAAATGGCGTCATA-----ATTCTCTTTGTTGTTGTTTTTG--TGCACCCAAAACA--TACG------------------------TGCT-AAAAAGATTTGTGTCTGAAA-------------------------------------ATACCCGAT---GCA---------------TATTATATGGAAATGACTT-----------------------------------------------------------------------------------------GGGGAAAAATGAATATCTAAAGAATATCAAAACAAAATT-CAAAGTC-ACAGC-----------------------------------------TGATTTGTACCC-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................AAAGATTTGTGTCTGAAA-------------------------------------ATA..................................................................................................................................................................................................................................................2111.0010000000010
..................................................................................................................................................................................................................................................................................................................TGGAAATGACTT-----------------------------------------------------------------------------------------GGGGAAAAATGAATAT...........................................................................................2811.0010000001000
..............................................................................................................................................................................................................................................................................................................TATATGGAAATGACTT-----------------------------------------------------------------------------------------GGG........................................................................................................1911.0010100000000
...........................................................................................................................................................................................................................TTTGTGTCTGAAA-------------------------------------ATACCCGA.............................................................................................................................................................................................................................................2111.0010000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTC-ACAGC-----------------------------------------TGATTTGTAC...2111.0010100000000
..................................................................................................................................................................................................................T-AAAAAGATTTGTGTCTGAAA-------------------------------------ATACCC...............................................................................................................................................................................................................................................2711.0010010000000
..........................................................................................................TAAGACCTGCCACCACAAATGGCGT...............................................................................................................................................................................................................................................................................................................................................................................................2520.5010100000000
..................................................................................................................................................................................................................................CTGAAA-------------------------------------ATACCCGAT---GCA---------------TAT....................................................................................................................................................................................................................2130.3310100000000
.............................................................................................................................................................................................................................................................................ATACCCGAT---GCA---------------TATTATATT..............................................................................................................................................................................................................2130.3310000000010
..............AGCTTCATACGATCGGTG---ATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000001000
...............................................................................AAAACGGAAAAATGTTGGT................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310100000000
.....................................................................................................................................TA-----ATTCTCTTTGTTGTTGTTTT..................................................................................................................................................................................................................................................................................................................................................................2230.3310100000000
........................................................................TATAATTAAAACGGAAAAATGTTGGT................................................................................................................................................................................................................................................................................................................................................................................................................................2630.3310100000000
............................................................................................................................................................................AAACA--TACG------------------------TGCT-AAAAAGAT......................................................................................................................................................................................................................................................................................................2130.3310000000010
........................GATCGGTG---ATGCAATAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310100000000
droPer2
AAAAA-----CCGCAGCTTCATACGATCGGTG---ATGCAATAAAA--GAAAATC--CT----ATGGAAATCTATAATTAAAACGGAAAAATGTTGGTTTA-TTATTAAGACCTGCCACCACAAATGGCGTCATA-----ATTCTCTTTGTTGTTGTTTTTG--TGCACCCAAAACA--TACG------------------------TGCT-AAAAAGATTTGTGTCTGAAA-------------------------------------ATACCCGAT---GCA---------------TATTATATGGAGATGACTT-----------------------------------------------------------------------------------------GGGGAAAAATGAATATCTAAAGAATATCAAAACAAAATT-CAAAGTC-ACAGC------------------------------TGATTT-------------GTAC-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................TACG------------------------TGCT-AAAAAGATTTGTG.................................................................................................................................................................................................................................................................................................2111.001000001
............................................................................................................................................................................................................................TTGTGTCTGAAA-------------------------------------ATACCCGAT---C........................................................................................................................................................................................................................................2211.001010000
.....................................................................................................................................................................................CG------------------------TGCT-AAAAAGATTTGTGTC...............................................................................................................................................................................................................................................................................................2111.001000001
...................................................................................................................................................................................TACG------------------------TGCT-AAAAAGATTTGTGT................................................................................................................................................................................................................................................................................................2211.001000001
.................................................................................................................................................................................................................CT-AAAAAGATTTGTGTCTGAAA-------------------------------------ATACCC...............................................................................................................................................................................................................................................2811.001100000
..............AGCTTCATACGATCGGTG---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.002200000
........................................................................................................................................................................................................................................................................................................................TGACTT-----------------------------------------------------------------------------------------GGGGAAAAATGAATA............................................................................................2120.501000001
......................................................................................................................................................................................................................................................................................................................GATGACTT-----------------------------------------------------------------------------------------GGGGAAAAATGAA..............................................................................................2120.501000001
..................................................................................................................................................................................................................................................................................................................TGGAGATGACTT-----------------------------------------------------------------------------------------GGGGAAAAAT.................................................................................................2220.501000001
.....................................................................................................................................................................................................................................................................................................................AGATGACTT-----------------------------------------------------------------------------------------GGGGAAAAAT.................................................................................................1920.501000001
.............................................................................................................................................................................................................................................................................................................TTATATGGAGATGACTT-----------------------------------------------------------------------------------------GGGG.......................................................................................................2120.501000001
..................................................................................................................................................................................................................................................................................................................TGGAGATGACTT-----------------------------------------------------------------------------------------GGGGAAA....................................................................................................1920.501000001
...................................................................................................................................................................................................................................TGAAA-------------------------------------ATACCCGAT---GCA---------------TAT....................................................................................................................................................................................................................2020.501000001

Generated: 05/19/2015 at 05:42 AM