ID:

dsi_70

 Coordinate:

x:18340511-18340569 +

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-45.4 -44.9 -44.7

Flybase annnotation

utr5 [utr5_plus_15688]

No Repeatable elements found

Sense Strand Reads

TGGGTCGACCTGGTCCTTTGGGCGTTCGCCTCCTTGCTGTGGGTGGGTGCAGGCGTGGACGTCAGCACAATGCCTTTGTTTGGCGGCATGTGGATGACGTTCATGTCCACATCCGCACACACATCCGCATCCATATCCGCGACCCCTGACCCTCGCCGG

***********************************..((((.(((((((..(((((((((((((.((((.((((..........))))))))..)))))))))))))..))))))).))))************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009

testis

 O001

Testis

 M024

male body		 SRR618934

dsim w501 ovaries

 O002

Head

 M053

female body

 M023

head

 SRR1275483

Male prepupae		 SRR553486

Makindu_3 day-old ovaries

 SRR902008

ovaries

 GSM343915

embryo

 SRR553488

RT_0-2 hours eggs

 SRR553485

Chicharo_3 day-old ovaries

 SRR1275487

Male larvae		 SRR553487

NRT_0-2 hours eggs

 M025

embryo
..................................................AGGCGTGGACGTCAGCACAATG....................................................................................... 22 0 1 3360.00 3360 3339 14 1 2 2 0 0 2 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGCC..................................................................................... 24 0 1 1448.00 1448 1334 83 25 1 1 0 1 1 1 1 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGC...................................................................................... 23 0 1 405.00 405 278 116 4 2 2 0 0 2 1 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCCAC................................................. 23 0 1 235.00 235 145 80 0 9 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGT..................................................... 19 0 1 183.00 183 162 19 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCC................................................... 21 0 1 136.00 136 31 93 6 2 4 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAAT........................................................................................ 21 0 1 122.00 122 61 60 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAA......................................................................................... 20 0 1 106.00 106 43 62 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATG...................................................... 18 0 1 96.00 96 12 81 0 0 3 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGT...................................................................................... 23 1 1 95.00 95 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTT.................................................... 20 1 1 94.00 94 94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................CCGTGCTGTGGGTGGGTGC............................................................................................................. 19 1 1 89.00 89 88 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCCA.................................................. 22 0 1 87.00 87 55 19 3 9 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTC.................................................... 20 0 1 59.00 59 17 39 0 0 1 1 1 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGCCT.................................................................................... 25 0 1 57.00 57 53 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATT....................................................................................... 22 1 1 51.00 51 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATTT...................................................................................... 23 2 1 47.00 47 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACA.......................................................................................... 19 0 1 40.00 40 3 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CATGTGGATGACGTTCATGTCCAC................................................. 24 0 1 40.00 40 4 29 3 4 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CATGTGGATGACGTTCATGTC.................................................... 21 0 1 37.00 37 25 8 1 1 0 0 0 0 2 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTTT................................................... 21 2 3 36.67 110 110 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGCT..................................................................................... 24 1 1 33.00 33 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CATGTGGATGACGTTCATG...................................................... 19 0 1 31.00 31 15 15 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CATGTGGATGACGTTCATGTCC................................................... 22 0 1 28.00 28 12 10 0 2 0 0 2 0 0 0 0 0 0 0 1 1
......................................................................................CATGTGGATGACGTTCATGT..................................................... 20 0 1 27.00 27 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CATGTGGATGACGTTCATGTCCA.................................................. 23 0 1 26.00 26 20 1 3 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGCCA.................................................................................... 25 1 1 25.00 25 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CATGTGGATGACGTTCAT....................................................... 18 0 1 22.00 22 1 19 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCCACA................................................ 24 0 1 20.00 20 19 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGTT..................................................................................... 24 2 1 19.00 19 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCAC........................................................................................... 18 0 1 18.00 18 0 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TCCGTGCTGTGGGTGGGTGC............................................................................................................. 20 1 1 17.00 17 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATTTT..................................................................................... 24 3 1 14.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GCAGGCGTGGAGGTCAGT............................................................................................. 18 2 4 12.50 50 0 5 4 9 1 25 1 0 0 0 1 0 0 4 0 0
...................................................GGCGTGGACGTCAGCACAATGCC..................................................................................... 23 0 1 10.00 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATTT..................................................... 19 1 1 10.00 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCT................................................... 21 1 1 9.00 9 8 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCCAT................................................. 23 1 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGCA..................................................................................... 24 1 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACTTT........................................................................................ 21 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCTT.................................................. 22 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATA....................................................................................... 22 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACTTTT....................................................................................... 22 3 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCCAA................................................. 23 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGCTT.................................................................................... 25 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATTTT.................................................... 20 2 3 5.33 16 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGCTTT................................................................................... 26 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATTA...................................................................................... 23 2 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGTTT.................................................................................... 25 2 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACTT......................................................................................... 20 2 2 4.50 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATTTTT.................................................................................... 25 3 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTA.................................................... 20 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGA...................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGCGTGGACGTCAGCACAATGC...................................................................................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GGGCGTGGACGTCAGCACAATG....................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGGGGACGTCAGCACAATG....................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AAGCGTGGACGTCAGCACAATG....................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGCCAGCACAATG....................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGTGGATGACGTTCATGTCCAC................................................. 22 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GCAGGCGTGGAGGTCA............................................................................................... 16 1 3 2.33 7 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGAAGTCAGCACAATGCC..................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGCGGACGTCAGCACAATG....................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGACGTGGACGTCAGCACAATG....................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CAGGCGTGGACGTCAGCACAATG....................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACC.......................................................................................... 19 1 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGAACAATG....................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGTGGATGACGTTCATGTCCA.................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTTAGCACAATGCC..................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACATTT....................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGCCTT................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTAAGCACAATGCC..................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTAAGCACAATG....................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCCTT................................................. 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTTA................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CATGTGGATGACGTTCATGTT.................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................CCGTGCTGTGGGTGGGTGCA............................................................................................................ 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCCACT................................................ 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAT......................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACATT........................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGAAGTCAGCACAATG....................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCATTTT........................................................................................ 21 3 3 1.33 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCTTTT..................................................... 19 2 3 1.33 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCTTT................................................. 23 3 3 1.33 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CGGCGTGGACGTCAGCACAATGCC..................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGGCGTTCATGT..................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCCATT................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCAGAATG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCA................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCGCAATGTT..................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCCACAT............................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCTTGGACGTCAGCACAATGCC..................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCATAT......................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGAGTGGACGTCAGCACAATGC...................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACATCAGCACAATGC...................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATCC...................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATGCGTGGACGTCAGCACAATGCC..................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGA..................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CAGGCGTGGACGTCAGCACAATGC...................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................ATCGTGGACGTCAGCACAATGCCATT.................................................................................. 26 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGCCAGCACAATGCC..................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGTA..................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATGCGTGGACGTCAGCACAATG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGCCAT................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATAA...................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAACACAAT........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGCGA.................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAAAG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAAGGCCT.................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CTCCTTGCTGTGGGTGGGTG.............................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGTGGATGACGTTCATGTCCTTT................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTCGATGACGTTCATGT..................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACATG........................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGAGGACGTCAGCACAATGCC..................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GCCTCCGTGCTGTGGGTGGGTGC............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCCACG................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCATTT......................................................................................... 20 3 7 1.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAAAGCC..................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGTGGATGACGTTCATGT..................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATCCC..................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTC......................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCTCAATG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACCATG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGTTA.................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGGGGACGTCAGCACAATGC...................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCACCACAATT....................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GCAGGCGTGGAGGTCAG.............................................................................................. 17 1 3 1.00 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACGATG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGCGAGGACGTCAGCACAATGC...................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCAAAATG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGGCGGCACAATGC...................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TCCGTGCTGTGGGTGGGTG.............................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGGCCAC................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCAT.................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CTCCGTGCTGTGGGTGGGTGC............................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGTCGTGGACGTCAGCACAATGC...................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTTG................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGAATGACGTTCGTGTCCACA................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCCGCACAATG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTAAGCACAATGCCA.................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAAGGC...................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................CCGTGCTGTGGGTGGGTCC............................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTTAGCACAATG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACATTTT...................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGTGGATGACGTTCATGTCC................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGTCCT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGATGTTCATGT..................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CATGTGGATGACGTTCATGA..................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGGGTGGACGTCAGCACAATACC..................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGCACGTCAGCACAATG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCGGCACAATGCC..................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATGCGTGGACGTCAGCACAATGC...................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGCAT.................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCGTGTCC................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CATGTGGATGACGTTCATGTCCAA................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGAGTGGACGTCAGCACAATGCC..................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GTGGACGTCAGCACAATGCC..................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCATAATG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCCCAATGCC..................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TGGATGACGTTCATGTCCA.................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGCTTTT.................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGTCA.................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACTATG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CATGTGGATGACGTTCATGTTC................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAAA........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATATGGATGACGTTCATGT..................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGTG..................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATGTTTT................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAATTC...................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGGGTGGACGTCAGCACAATG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CATGTGGATGACGTTCATGTCA................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................CATGTGGATGACGTTCATT...................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CATGTGGATGACGTTCATGTCAA.................................................. 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................AGGCGTGGACGTCAGCAAAATT....................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................GTGCAGGCGTGGAGGTCAGT............................................................................................. 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................CTCCGTGCTGTGGGTGGGGGC............................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGACGTCAGCACAGTGCC..................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGAGTGGACGTCAGCACAATG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CAGGCGTGGAGGTCAGT............................................................................................. 17 2 7 0.71 5 0 0 0 1 0 0 0 0 0 0 0 1 2 1 0 0
.......................................................................................ATGTGGATGACGTTCAATT..................................................... 19 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATTTTT................................................... 21 3 8 0.63 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................AAGTGGATGACGTTCATG...................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................ATGCAGGCGTGGAGGTCAG.............................................................................................. 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................CGTGCTGTGGGTGGGTGC............................................................................................................. 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................CCGTGCTGTGGGTGGGAGC............................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACCTTCATG...................................................... 18 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATGAT.................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GCAGGCGTGGAGGTC................................................................................................ 15 1 8 0.38 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CAGGCGTGGAGGTCA............................................................................................... 15 1 6 0.33 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................AGGCGTGGACGTCAGCATT.......................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCATTA..................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CAGGCGTGGAGGTCAG.............................................................................................. 16 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCAATTT.................................................... 20 3 17 0.29 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGGGGATGACGTTCATGTTT................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TAGTTTGGCGGCATTTGGATT............................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................GGCAGGCGTGGAGGTCAGC............................................................................................. 19 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGCTCATGTTT................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GCATTTGATTGGCGGCATG..................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGAGGTCAG.............................................................................................. 15 1 11 0.18 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................ATGTGGATGACGTTCTTTTA.................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GCAGGCGTGGAGGTCCG.............................................................................................. 17 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................ATGTGGATGCCGTTCATGTTT................................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGGATGACGTTCATGTTT................................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................AATGCCTTTGTTTGAC........................................................................... 16 1 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................GTATGCAGGCGTGGAGGTC................................................................................................ 19 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGAGGTTCATA...................................................... 18 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGTGGATGACGTTCAATTA.................................................... 20 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................ACATGTGGATGACGTTCAAA...................................................... 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGCGTGGAGGTCAGGACG.......................................................................................... 19 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TATGCAGGCGTGGAGGTC................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........GTTCCTTTGGTCGCTCGCC................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCCAGCTGGACCAGGAAACCCGCAAGCGGAGGAACGACACCCACCCACGTCCGCACCTGCAGTCGTGTTACGGAAACAAACCGCCGTACACCTACTGCAAGTACAGGTGTAGGCGTGTGTGTAGGCGTAGGTATAGGCGCTGGGGACTGGGAGCGGCC

**************************************..((((.(((((((..(((((((((((((.((((.((((..........))))))))..)))))))))))))..))))))).))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487

NRT_0-2 hours eggs

 SRR618934

dsim w501 ovaries

 SRR902009

testis
.CCCGGCTGGACCATGA.............................................................................................................................................. 16 2 17 0.12 2 2 0 0
...............................................................................................................................GTAGGTTTGGGCGCTGG............... 17 2 11 0.09 1 0 1 0
...........................................................................................................GTGTAGGCGTGGGTGTAGGC................................ 20 1 12 0.08 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 x:18340461-18340619 + dsi_70 confident TGG---GTCG---ACCT-----------GGTCCTTTGGGCGTTCGCCTC--------CTTGCTGT--GGGTGGGTGCAGGCGTGGACGTCAGCACAATGCCTTTGT---TTGGCGGCATGTG-GATGACG---TTCATGTCCACATCCGCAC----ACACATCCGCATCCATA--TCC---------------------------------------------------------------------------------------------------------GCGACCCC-------------------------TGACCCTC-----G-----CCGG
droSec2 scaffold_8:1733303-1733461 + dse_61 confident TGG---GTCG---ACCT-----------GGTCCTTTGGGCGTTCGCCTC--------CGTGCTGT--GGGTGGGTGCAGGCGTGGACGTCAGCACAATGCCTTTGT---TTGGCGGCATGTG-GATGACG---TTCATGTCCACATCCGCAC----ACACATCCGCATCCATA--TCC---------------------------------------------------------------------------------------------------------GCGACCCC-------------------------TGACCCTC-----G-----CCAG
dm3 chrX:19451008-19451173 + dme-mir-2499 Known_mirbase TGGTGTGTCG---ACCT-----------GGTCCTTTGGGCGTTCGCCTC--------CTTGCTGTGGGTGTGGTTGCGTGCGTAGACGTCAGCGCAATGCCTTTGT---TTGGCGGCATGCG-GATGACA---TTCACGTCCGTATCCGCAC----ACACATCCGCATCCATATATC---------------------------------------------------------------------------------------------------------CGCAACCCC-------------------------CGACCATC-----G-----CCAG
droEre2 scaffold_4690:9687352-9687510 + der_112 confident CGG---GTCG---AACT-----------GGGCCTTTGGGCGCTCCTTTC--------CTGGCTGT--GAGTGGGTGCGTGCGTTTATGTCAGCGCAATGCTTTTGT---TTGGCGGCATGCG-GATGGCA---TACACGTCCACATCCGCAC----ACACATCCGCATCCGTA--TCA---------------------------------------------------------------------------------------------------------GCGACCCC-------------------------TGACCCCT-----G-----CCAG
droYak3 X:11887416-11887574 - dya_49 confident TGG---GTCC---ACCT-----------GGTCCTTTGGGCGCTCTCCTC--------CTTGCTGT--GAGCGGGTGCGTGCGTTGACGTCAGCGCAATGCCTTTGT---TTGTCGGCATGCG-GATGGCG---TACACGTCCACATCCGCAC----ACACACACGCATCTGTA--TCC---------------------------------------------------------------------------------------------------------GCGACCCC-------------------------TGACCCTC-----C-----CCAG
droEug1 scf7180000409109:1896-2081 - TGC---GATT---GCCT-----------GCCACT-----------------------CTTTCTGT--GAGTGGGTGCGTGCGTTGACGTCAGCGCAATGCCTTTGT---TTGCCGGCATGCG-GATGGCG---TACACGTCCACATCCGCGC----ACACATTCGCAACAATA--TCCGC---------------ATATGGATTTACAACTGCAGCCCTATCCAC------------------------------------------------ACAGGCATTCGCGATCCC-------------------------TGACCCTT-----G-----CCAT
droBia1 scf7180000302069:1152981-1153166 - TTC---CC-----------------------------G--------ATCCCGTTTCCGCACCTGT--GAGTGGGTGCGTGCGTTGACGTCAGCGCAATGCCTTTGT---TGGATGGCATGCG-GATGGCG---TACACGTCCACATCCGCGC----ACATATTCGCATCAGCT--TCC-----------GC----TTCCGCATTCACGGCTGCAGCCCTATCCGC------------------------------------------------ACGGACATCCGCGACCCC-------------------------TGGCCACC-----G-----CCCG
droTak1 scf7180000415169:846441-846599 - -------------------------------------------------------------CTGT--GAGTGGGTGCGTGCGTTGACGTCAGCGCAATGCCTTTGT---TTGTCGGCATGCG-GATGGCG---TATACGTCCTCATCCGCAC----ACACATCCGCATCGGCA--TCCAC---------------------ATTTGCAACTGCAGCCATATCCGC------------------------------------------------GCACACATCCGCGCGACC-------------------------TGACCACC-----G-----CCTG
droEle1 scf7180000490751:1116714-1116911 + GG-----TCGATTGGGTGCCTCCTGCAA--TCTGGAGGTCCTTCACGCC--------GGATTTTT--GTGTGTGTGATGGGGTTGGAGTCAGCGCAATGCCATTGT---TTGCCGTCATGCG-GCTGGCT---CGCAGATAGACATCCACAT----CCACATCCGCATCCGCA--T------TACAAGTGCAGCA----------------------AACTTCGC------------------------------------------------CACC-----CCTGACCCC-------------------------TGACCCCTCCCCTG-----CCTG
droRho1 scf7180000761121:191826-191996 - TGT---GTTG---G--A-----------GGTCCTTCAG--------ATCCA------GTTTCTGC--GTGTGTGTGTTGGCGTTGGCGTCAGCGCAATGCCATTGT---TTGCCGGCATGTG-GCTGCCG---TGCACGTCCACATCCGCAT----CCGCACCCGCATCCGCA--TCCGCATTACAAGTGCAGCA----------------------ACATCCGC---------------------------------------------------------------TCC-------------------------AGACCCCT-----G-----GCTG
droFic1 scf7180000454073:1729733-1729925 + TG--------------------------------------------------------------T--GTGCGTGTTTCGACGTTGGCGTCAGCGCAGTGCCATTGTTATTTGCCGGCATGCG-GTTGGCG---TGCGCGTCGACATCCGCATTTCTATACAACCATTTCTAC-----------------------TCCTGAATTCT--ACTGCTACT------GC-TGGATGCTACTACTGGATGCTACTGCTGAATGCTACTGCCGAATGCCACT-GCAACTGCGACTCC-------------------------GGA--------------------
droKik1 scf7180000302517:1182249-1182391 + TG--------------------------------------------------------------T--GTGCGTGTGTTATCGTTGGTGTCAGCGCAATGCCGTTGT---TTGCCGGCATGCA-GCTAATG---TCAATGTCTACATCCGCAC----CCGCACTCGCACATCTA-------------GATGCAGTT---------AG------------------TC--------------------------------------------------------CTCAACCCT-------------------------TGGACATCCACCTCCTTGTACAG
droAna3 scaffold_13417:2469653-2469785 - TG--------------------------------------------------------------T--GTGCGTGTGTTGGCGTTGGCGTCAGCGCAATGCCATTGT---TTGCCGGCATGCG-GCTGGCG---TGCACGTCTACATCCGCAC----CTGCATCCACAT--------------AGCAGCTGCAACA----------------------ACA------------------------------------------------------------------AACACGG-----CACT--------------CCGTCTGC-----G-----CCGC
droBip1 scf7180000395874:41970-42121 - TG--------------------------------------------------------------T--GTGCGTGTGTTGGCGTTGGCGTCAGCGCAATGCCATTGT---TTACCGGCATGCG-GCTGGCG---TGCACGTCTACATCCGCAC----CTGCATTCACAT--------------AGCAGCTGCAACA----------------------ACA------------------------------------------------------------------AACACGGCTCGGCACATCGTCCACCCGGGGTGCTCAAG-----A-----CCTG
droVir3 scaffold_13042:909668-909776 - G--------------------------------------------------------------------------------------------------CCATTGT---T--ATGGCAGGTGGGCAGGTGTCATCAATAGCCGCATCCA--G----GCACATCCGCATCCACA--TCCGT--TGCAGGTGTCGCA-------TTTG------------------CC--------------------------------------------------------C-TTACCCT-------------------------TTAGCCGG-----G-----CCGG
droGri2 scaffold_15081:2046302-2046381 - TT------------------------------------------------------------------------------------------------------------TGAGGGCATGCG-GCAGGTG---TCAACG-CCACGTCCTCAT----TTGCATCCGCTTCCGCA--TCC---------------------------------------------------------------------------------------------------------GCATCCGC-------------------------TGTCGCAT-----T-----TCCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGG---GTCG---ACCT-----------GGTCCTTTGGGCGTTCGCCTC--------CTTGCTGT--GGGTGGGTGCAGGCGTGGACGTCAGCACAATGCCTTTGT---TTGGCGGCATGTG-GATGACG---TTCATGTCCACATCCGCAC----ACACATCCGCATCCATA--TCC---------------------------------------------------------------------------------------------------------GCGACCCC-------------------------TGACCCTC-----G-----CCGGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.............................................................................AGGCGTGGACGTCAGCACAATG................................................................................................................................................................................................................................................2213360.003360010014200002003339002
.............................................................................AGGCGTGGACGTCAGCACAATGCC..............................................................................................................................................................................................................................................2411448.0014481250083101001011334001
.............................................................................AGGCGTGGACGTCAGCACAATGC...............................................................................................................................................................................................................................................231405.00405040011620100200278002
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCAC...................................................................................................................................................................................................231235.0023500008010000900145000
.....................................................................................................................ATGTG-GATGACG---TTCATGT.......................................................................................................................................................................................................191183.0018300001920000000162000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCC.....................................................................................................................................................................................................211136.001360600934000020031000
.............................................................................AGGCGTGGACGTCAGCACAAT.................................................................................................................................................................................................................................................211122.001220000601000000061000
.............................................................................AGGCGTGGACGTCAGCACAA..................................................................................................................................................................................................................................................201106.001060100620000000043000
.....................................................................................................................ATGTG-GATGACG---TTCATG........................................................................................................................................................................................................18196.00960000813000000012000
.............................................................................AGGCGTGGACGTCAGCACAATGT...............................................................................................................................................................................................................................................23195.0095000000000000095000
.....................................................................................................................ATGTG-GATGACG---TTCATGTT......................................................................................................................................................................................................20194.0094000000000000094000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCA....................................................................................................................................................................................................22187.00870300190000091055000
.....................................................................................................................ATGTG-GATGACG---TTCATGTC......................................................................................................................................................................................................20159.00591001391000000017000
.............................................................................AGGCGTGGACGTCAGCACAATGCCT.............................................................................................................................................................................................................................................25157.0057010030000000053000
.............................................................................AGGCGTGGACGTCAGCACAATT................................................................................................................................................................................................................................................22151.0051000000000000051000
.............................................................................AGGCGTGGACGTCAGCACAATTT...............................................................................................................................................................................................................................................23147.0047000000000000047000
.............................................................................AGGCGTGGACGTCAGCACA...................................................................................................................................................................................................................................................19140.0040000037000000003000
....................................................................................................................CATGTG-GATGACG---TTCATGTCCAC...................................................................................................................................................................................................24140.0040030029000004004000
....................................................................................................................CATGTG-GATGACG---TTCATGTC......................................................................................................................................................................................................21137.0037010080020010025000
.....................................................................................................................ATGTG-GATGACG---TTCATGTTT.....................................................................................................................................................................................................21336.671100000000000000110000
.............................................................................AGGCGTGGACGTCAGCACAATGCT..............................................................................................................................................................................................................................................24133.0033000000000000033000
....................................................................................................................CATGTG-GATGACG---TTCATG........................................................................................................................................................................................................19131.00310000151000000015000
....................................................................................................................CATGTG-GATGACG---TTCATGTCC.....................................................................................................................................................................................................22128.00282010100001020012000
....................................................................................................................CATGTG-GATGACG---TTCATGT.......................................................................................................................................................................................................20127.0027000000000000027000
....................................................................................................................CATGTG-GATGACG---TTCATGTCCA....................................................................................................................................................................................................23126.0026030010100010020000
.............................................................................AGGCGTGGACGTCAGCACAATGCCA.............................................................................................................................................................................................................................................25125.0025000000000000025000
....................................................................................................................CATGTG-GATGACG---TTCAT.........................................................................................................................................................................................................18122.0022000019200000001000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCACA..................................................................................................................................................................................................24120.0020000010000000019000
.............................................................................AGGCGTGGACGTCAGCACAATGTT..............................................................................................................................................................................................................................................24119.0019000000000000019000
.............................................................................AGGCGTGGACGTCAGCAC....................................................................................................................................................................................................................................................18118.0018000018000000000000
.............................................................................AGGCGTGGACGTCAGCACAATTTT..............................................................................................................................................................................................................................................24114.0014000000000000014000
..............................................................................GGCGTGGACGTCAGCACAATGCC..............................................................................................................................................................................................................................................23110.0010000000000000010000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCT.....................................................................................................................................................................................................2119.00901000000000008000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCAT...................................................................................................................................................................................................2317.00700000000000007000
.............................................................................AGGCGTGGACGTCAGCACAATGCA..............................................................................................................................................................................................................................................2417.00700000000000007000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCTT....................................................................................................................................................................................................2217.00700000000000007000
.............................................................................AGGCGTGGACGTCAGCACAATA................................................................................................................................................................................................................................................2216.00600000000000006000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCAA...................................................................................................................................................................................................2316.00600000000000006000
.............................................................................AGGCGTGGACGTCAGCACAATTA...............................................................................................................................................................................................................................................2315.00500000000000005000
.............................................................................AGGCGTGGACGTCAGCACTT..................................................................................................................................................................................................................................................2024.50900000000000009000
.....................................................................................................................ATGTG-GATGACG---TTCATGTA......................................................................................................................................................................................................2014.00400000000000004000
.............................................................................AGGCGTGGACGTCAGCACAATGA...............................................................................................................................................................................................................................................2314.00400000000000004000
..............................................................................GGCGTGGACGTCAGCACAATGC...............................................................................................................................................................................................................................................2213.00300000000000003000
......................................................................................................................TGTG-GATGACG---TTCATGTCCAC...................................................................................................................................................................................................2213.00300002000000001000
............................................................................CAGGCGTGGACGTCAGCACAATG................................................................................................................................................................................................................................................2312.00200000000000002000
.............................................................................AGGCGTGGACGTCAGCACC...................................................................................................................................................................................................................................................1912.00220000000000000000
......................................................................................................................TGTG-GATGACG---TTCATGTCCA....................................................................................................................................................................................................2112.00200000000000002000
.............................................................................AGGCGTGGACGTCAGCACAATGCCTT............................................................................................................................................................................................................................................2612.00200000000000002000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCTT...................................................................................................................................................................................................2312.00200000000000002000
.....................................................................................................................ATGTG-GATGACG---TTCATGTTA.....................................................................................................................................................................................................2112.00200000000000002000
....................................................................................................................CATGTG-GATGACG---TTCATGTT......................................................................................................................................................................................................2112.00200000000000002000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCACT..................................................................................................................................................................................................2412.00200000000000002000
.............................................................................AGGCGTGGACGTCAGCACAT..................................................................................................................................................................................................................................................2012.00200000000000002000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCTTT...................................................................................................................................................................................................2331.33400000000000004000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCATT..................................................................................................................................................................................................2411.00100000000000001000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCA.....................................................................................................................................................................................................2111.00100000000000001000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCACAT.................................................................................................................................................................................................2511.00100001000000000000
.....................................................................................................................ATGTG-GATGACG---TTCATGA.......................................................................................................................................................................................................1911.00100000000000001000
............................................................................CAGGCGTGGACGTCAGCACAATGC...............................................................................................................................................................................................................................................2411.00100000000000001000
.............................................................................AGGCGTGGACGTCAGCACAATGTA..............................................................................................................................................................................................................................................2411.00100000000000001000
.............................................................................AGGCGTGGACGTCAGCACAATAA...............................................................................................................................................................................................................................................2311.00100000000000001000
.............................................................................AGGCGTGGACGTCAGCACAATGCGA.............................................................................................................................................................................................................................................2511.00100000000000001000
..............................................CTC--------CTTGCTGT--GGGTGGGTG.......................................................................................................................................................................................................................................................................2011.00100001000000000000
......................................................................................................................TGTG-GATGACG---TTCATGTCCTTT..................................................................................................................................................................................................2311.00100000000000001000
.............................................................................AGGCGTGGACGTCAGCACATG.................................................................................................................................................................................................................................................2111.00100000000000001000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCACG..................................................................................................................................................................................................2411.00100000000001000000
.............................................................................AGGCGTGGACGTCAGCATTT..................................................................................................................................................................................................................................................2071.00700000000000007000
......................................................................................................................TGTG-GATGACG---TTCATGT.......................................................................................................................................................................................................1811.00100001000000000000
.....................................................................................................................ATGTG-GATGACG---TTC...........................................................................................................................................................................................................1511.00100000000000001000
.............................................................................AGGCGTGGACGTCAGCACAATGTTA.............................................................................................................................................................................................................................................2511.00100000000000001000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCAT....................................................................................................................................................................................................2211.00100000000000001000
.....................................................................................................................ATGTG-GATGACG---TTCATGTTG.....................................................................................................................................................................................................2111.00100000000000001000
......................................................................................................................TGTG-GATGACG---TTCATGTCC.....................................................................................................................................................................................................2011.00100001000000000000
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCT....................................................................................................................................................................................................2211.00100000000000001000
....................................................................................................................CATGTG-GATGACG---TTCATGA.......................................................................................................................................................................................................2011.00100000000000001000
....................................................................................................................CATGTG-GATGACG---TTCATGTCCAA...................................................................................................................................................................................................2411.00100000000000001000
.................................................................................GTGGACGTCAGCACAATGCC..............................................................................................................................................................................................................................................2011.00100000000001000000
........................................................................................................................TG-GATGACG---TTCATGTCCA....................................................................................................................................................................................................1911.00100010000000000000
.............................................................................AGGCGTGGACGTCAGCACAAA.................................................................................................................................................................................................................................................2111.00100000000000001000
.............................................................................AGGCGTGGACGTCAGCACAATGTG..............................................................................................................................................................................................................................................2411.00100000000000001000
....................................................................................................................CATGTG-GATGACG---TTCATGTCA.....................................................................................................................................................................................................2211.00100000000000010000
....................................................................................................................CATGTG-GATGACG---TTCATT........................................................................................................................................................................................................1911.00100000000000001000
.....................................................................................................................ATGTG-GATGACG---TTCATGAT......................................................................................................................................................................................................2020.50100000000000001000
.............................................................................AGGCGTGGACGTCAGCATT...................................................................................................................................................................................................................................................1930.33100000000000001000
.....................................................................................................................ATGTG-GATGACG---TTCATTA.......................................................................................................................................................................................................1930.33100000000000001000
droSec2
TGG---GTCG---ACCT-----------GGTCCTTTGGGCGTTCGCCTC--------CGTGCTGT--GGGTGGGTGCAGGCGTGGACGTCAGCACAATGCCTTTGT---TTGGCGGCATGTG-GATGACG---TTCATGTCCACATCCGCAC----ACACATCCGCATCCATA--TCC---------------------------------------------------------------------------------------------------------GCGACCCC-------------------------TGACCCTC-----G-----CCAGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCA....................................................................................................................................................................................................221225.0022501672038
.....................................................................................................................ATGTG-GATGACG---TTCATGTCC.....................................................................................................................................................................................................211135.00135112446
....................................................................................................................CATGTG-GATGACG---TTCATGTCCA....................................................................................................................................................................................................231129.001291613631
.............................................................................AGGCGTGGACGTCAGCACAATGC...............................................................................................................................................................................................................................................23122.002201453
.............................................................................AGGCGTGGACGTCAGCACAATG................................................................................................................................................................................................................................................22120.002021323
....................................................................................................................CATGTG-GATGACG---TTCATGTCC.....................................................................................................................................................................................................22118.00181737
.....................................................................................................................ATGTG-GATGACG---TTCATGTC......................................................................................................................................................................................................20117.001701700
.............................................................................AGGCGTGGACGTCAGCACAATGCC..............................................................................................................................................................................................................................................24114.00140842
......................................................................................................................TGTG-GATGACG---TTCATGTCCA....................................................................................................................................................................................................2115.0050500
....................................................................................................................CATGTG-GATGACG---TTCATGTC......................................................................................................................................................................................................2115.0050320
.....................................................................................................................ATGTG-GATGACG---TTCATGT.......................................................................................................................................................................................................1915.0050401
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCAC...................................................................................................................................................................................................2315.0051211
....................................................................................................................CATGTG-GATGACG---TTCATGTCCAC...................................................................................................................................................................................................2413.0030201
.............................................................................AGGCGTGGACGTCAGCACAAT.................................................................................................................................................................................................................................................2112.0020200
.....................................................................................................................ATGTG-GATGACG---TTCATGTCT.....................................................................................................................................................................................................2112.0020200
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCT....................................................................................................................................................................................................2212.0020101
......................................................................................................................TGTG-GATGACG---TTCATGTC......................................................................................................................................................................................................1911.0010100
....................................................................................................................CATGTG-GATGACG---TTCATGTCCAA...................................................................................................................................................................................................2411.0010010
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCC....................................................................................................................................................................................................2211.0010100
..............................................................................GGCGTGGACGTCAGCACAATG................................................................................................................................................................................................................................................2111.0010100
.....................................................................................................................ATGTG-GATGACG---TTCATGTCCATT..................................................................................................................................................................................................2411.0010100
.....................................................................................................................ATGTG-GATGACG---TTCATA........................................................................................................................................................................................................1820.5010001
dm3
TGGTGTGTCG---ACCT-----------GGTCCTTTGGGCGTTCGCCTC--------CTTGCTGTGGGTGTGGTTGCGTGCGTAGACGTCAGCGCAATGCCTTTGT---TTGGCGGCATGCG-GATGACA---TTCACGTCCGTATCCGCAC----ACACATCCGCATCCATATATC---------------------------------------------------------------------------------------------------------CGCAACCCC-------------------------CGACCATC-----G-----CCAGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.....................................................................................................................ATGCG-GATGACA---TTCACGTCCG....................................................................................................................................................................................................2214552.00455200000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000010000000000000200600002090000000000000000000000000000010000000000000000020002204200000015121300000000000000001001101014030000000220000052239510505046105604500217720180
.....................................................................................................................ATGCG-GATGACA---TTCACGTCC.....................................................................................................................................................................................................2112856.002856000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000003000000000000000100000000000000000000911000040300000000000000000000000000000000000000000000000000001000000000602050000000000000003001000302103000003035000200322690000005502123022100241040
.....................................................................................................................ATGCG-GATGACA---TTCACGTCCGTA..................................................................................................................................................................................................2411769.001769000000000005000000000001000000000000001010000000000000000000000000000000000000100304400000000400150000010000030140003000000000000000000000000000000000050000000000000001100000101000200000007011000015011600000000000000000000000100000000000000000000006003000010000001403100030000100000100000000080300000001044000001288700000020109000000259190
....................................................................................................................CATGCG-GATGACA---TTCACGTCCG....................................................................................................................................................................................................231937.0093700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000101000000000610000000000000000000000000000000000001000000048110000090013000010372030
.....................................................................................................................ATGCG-GATGACA---TTCACGTCCGT...................................................................................................................................................................................................231567.005670000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000005000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000001403000080110000000000000000000000000000000000000000000000000000000000001031143001000110000000000001000100000000000000010102810000000000100000084020
.........................................................CTTGCTGTGGGTGTGGTTG.......................................................................................................................................................................................................................................................................191477.004770000000000000000000000050000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000003013000010000000000000000000000000010000000000000000000000000001000001000411300000000000000000000000141000000000011000000035500003023000200000031000
....................................................................................................................CATGCG-GATGACA---TTCACGTCC.....................................................................................................................................................................................................221429.0042900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000370010000000000002000000000002000000000000000030600102013000100000063010
.....................................................................................................................ATGCG-GATGACA---TTCACGTC......................................................................................................................................................................................................201379.003790000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000003021000000000000000000000000010000000000200000002830000007021113200050010
....................................................................................................................CATGCG-GATGACA---TTCACGTCCGT...................................................................................................................................................................................................241206.002060000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000041002000000000000100001001000000000000000000001350000000000000000019020
.....................................................................................................................ATGCG-GATGACA---TTCACGTCCGTT..................................................................................................................................................................................................241205.00205000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000400000000000000000000000000000000000000000000000000000000000000015100000012000000000000000000000000000000000000650000000000001100074020
....................................................................................................................CATGCG-GATGACA---TTCACGTCCGTA..................................................................................................................................................................................................251201.002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000003000000006000000000000000000000000000000000000000000000000000000000000001018000000000000000100000001100000000001200000001290000000000200000032020
....................................................................................................................CATGCG-GATGACA---TTCACGTC......................................................................................................................................................................................................211157.00157000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000001120000001010200000035000
............................................................................CGTGCGTAGACGTCAGCGCAATGC...............................................................................................................................................................................................................................................241114.001140000000000000000000000000000000000000000100000000000000000000000000000000000000000070000000001001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000005010000000000000000000000000100000000000000000000000000020000000000000000060000000000000000000000000100000000000000000075000000100020000009000
................................................C--------CTTGCTGTGGGTGTGGTTG.......................................................................................................................................................................................................................................................................201108.0010800000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000200000000000000000000760000001000000000025000
............................................................................CGTGCGTAGACGTCAGCGCAATG................................................................................................................................................................................................................................................23155.00550000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004020000002000000000000000000000000000000000000000000000010000000000000001020000000000000000000000000001000000000000000036000000000000000003000
...............................................TC--------CTTGCTGTGGGTGTGGTTG.......................................................................................................................................................................................................................................................................21148.00480000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000010000000000000000000000000000000000000000000033000000200000000009000
............................................................................CGTGCGTAGACGTCAGCGCAATGCC..............................................................................................................................................................................................................................................25143.00430000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000002000000100000000000000000000000000000000000000000000000000000000000000000020000010000000000000000000100000001021000000024000000000000000003000
.....................................................................................................................ATGCG-GATGACA---TTCACGT.......................................................................................................................................................................................................19141.004100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030020000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000020000000016000000100001000004000
..........................................................TTGCTGTGGGTGTGGTTG.......................................................................................................................................................................................................................................................................18128.00280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000200000000000000000000000000000000000000000000000000000000000000010010000000000000000000000030000000000001000000016000001000000000002000
....................................................................................................................CATGCG-GATGACA---TTCACGTCCGTT..................................................................................................................................................................................................25127.00270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090010000000000000000000000000000000000000000014000000000000000003000
..............................................CTC--------CTTGCTGTGGGTGTGGTTG.......................................................................................................................................................................................................................................................................22117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000000010000000000000000000000010000000000000000000011000000000000000002000
.....................................................................................................................ATGCG-GATGACA---TTCACGTCCGTC..................................................................................................................................................................................................24116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000005000000000000000002000
.....................................................................................................................ATGCG-GATGACA---TTCACGTCT.....................................................................................................................................................................................................21115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000013000000000000000001000
.....................................................................................................................ATGCG-GATGACA---TTCACGTCA.....................................................................................................................................................................................................21114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000100000000000000000000000000006000000110000000003000
..............................................................................TGCGTAGACGTCAGCGCAATGCC..............................................................................................................................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001004000000000000000000000001000000000000000000003000000000000000000000
....................................................................................................................CATGCG-GATGACA---TTCACGT.......................................................................................................................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000104000000000000000002000
.....................................................................................................................ATGCG-GATGACA---TTCACGTCCA....................................................................................................................................................................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000003000000000000000003000
....................................................................................................................CATGCG-GATGACA---TTCACG........................................................................................................................................................................................................1917.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000001000000000000000004000
............................................................................CGTGCGTAGACGTCAGCGCAAT.................................................................................................................................................................................................................................................2215.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000001000
.....................................................................................................................ATGCG-GATGACA---TTCACGTCCGCT..................................................................................................................................................................................................2415.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000002000000000000000001000
.....................................................................................................................ATGCG-GATGACA---TTCACGTCCC....................................................................................................................................................................................................2215.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000002000
.....................................................................................................................ATGCG-GATGACA---TTCACGTCCGTAA.................................................................................................................................................................................................2515.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
.............................................CCTC--------CTTGCTGTGGGTGTGGTTG.......................................................................................................................................................................................................................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000100000000000001000
.....................................................................................................................ATGCG-GATGACA---TTCACG........................................................................................................................................................................................................1814.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................CATGCG-GATGACA---TTCACGTCA.....................................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000002000
..............................................................................TGCGTAGACGTCAGCGCAATGC...............................................................................................................................................................................................................................................2213.003000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................CATGCG-GATGACA---TTCACGTCCT....................................................................................................................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000002000
.....................................................................................................................ATGCG-GATGACA---TTCACGTCCGTG..................................................................................................................................................................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000002000
......................................................................................................................TGCG-GATGACA---TTCACGTCCG....................................................................................................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000002000
.....................................................................................................................ATGCG-GATGACA---TTCACGTCCGA...................................................................................................................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100001000
.....................................................................................................................ATGCG-GATGACA---TTCACGTT......................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000
......................................................................................................................TGCG-GATGACA---TTCACGTCCGTA..................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGTGTCG---ACCT-----------GGTCCTTTGG.............................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000
......................................................................................................................TGCG-GATGACA---TTCACGTCC.....................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
.....................................................................................................................ATGCG-GATGACA---TTCACGTCCT....................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
............................................................................CGTGCGTAGACGTCAGCGCAA..................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................CGTGCGTAGACGTCAGCGC....................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
............................................................................CGTGCGTAGACGTCAGCGCA...................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000
....................................................................................................................CATGCG-GATGACA---TTCACGTCCC....................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000
.....................................................................................................................ATGCG-GATGACA---TTCACGTCCGG...................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
.....................................................................................................................ATGCG-GATGACA---TTCACGTCCGC...................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
...............................................TC--------CTTGCTGTGGGTGTGGTT........................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................C--------CTTGCTGTGGGTGTGGTTGC......................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................................CATGCG-GATGACA---TTCACGTCTT....................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droEre2
CGG---GTCG---AACT-----------GGGCCTTTGGGCGCTCCTTTC--------CTGGCTGT--GAGTGGGTGCGTGCGTTTATGTCAGCGCAATGCTTTTGT---TTGGCGGCATGCG-GATGGCA---TACACGTCCACATCCGCAC----ACACATCCGCATCCGTA--TCA---------------------------------------------------------------------------------------------------------GCGACCCC-------------------------TGACCCCT-----G-----CCAGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.....................................................................................................................ATGCG-GATGGCA---TACACGTCCA....................................................................................................................................................................................................221553.0055310110464770
.....................................................................................................................ATGCG-GATGGCA---TACACGTCC.....................................................................................................................................................................................................211164.001641010142200
.....................................................................................................................ATGCG-GATGGCA---TACACGTCCACA..................................................................................................................................................................................................241122.00122105094220
.....................................................................................................................ATGCG-GATGGCA---TACACGTCCAC...................................................................................................................................................................................................231103.00103104185120
.....................................................................................................................ATGCG-GATGGCA---TACACGTC......................................................................................................................................................................................................20144.004400104030
....................................................................................................................CATGCG-GATGGCA---TACACGTCCA....................................................................................................................................................................................................23129.002900002630
....................................................................................................................CATGCG-GATGGCA---TACACGTC......................................................................................................................................................................................................21111.001100001100
....................................................................................................................CATGCG-GATGGCA---TACACGTCC.....................................................................................................................................................................................................2215.0051000130
....................................................................................................................CATGCG-GATGGCA---TACACGTCCAC...................................................................................................................................................................................................2414.0040000400
.....................................................................................................................ATGCG-GATGGCA---TACACGTCCACT..................................................................................................................................................................................................2413.0030000300
....................................................................................................................CATGCG-GATGGCA---TACACG........................................................................................................................................................................................................1912.0020000200
....................................................................................................................CATGCG-GATGGCA---TACACGTCT.....................................................................................................................................................................................................2212.0020000200
............................................................................CGTGCGTTTATGTCAGCGCAATG................................................................................................................................................................................................................................................2312.0020000020
......................................................................................................................TGCG-GATGGCA---TACACGTCCACA..................................................................................................................................................................................................2312.0020000200
.....................................................................................................................ATGCG-GATGGCA---TACACGTCCAT...................................................................................................................................................................................................2312.0020000110
.............................................................................GTGCGTTTATGTCAGCGCT...................................................................................................................................................................................................................................................1911.0010000100
.....................................................................................................................ATGCG-GATGGCA---TACACGTCCATT..................................................................................................................................................................................................2411.0010000100
...............................................TC--------CTGGCTGT--GAGTGGGTG.......................................................................................................................................................................................................................................................................1911.0010000010
.....................................................................................................TTTGT---TTGGCGGCATGCG-GATGG...................................................................................................................................................................................................................2311.0010000100
....................................................................................................................CATGCG-GATGGCA---TACACGT.......................................................................................................................................................................................................2011.0010000100
.......................................................................................................................GCG-GATGGCA---TACACGTCCAC...................................................................................................................................................................................................2111.0010000100
....................................................................................................................CATGCG-GATGGCA---TACACGTCCAA...................................................................................................................................................................................................2411.0010000100
......................................................................................................................TGCG-GATGGCA---TACACGTCCA....................................................................................................................................................................................................2111.0011000000
.....................................................................................................................ATGCG-GATGGCA---TACACGTCCACC..................................................................................................................................................................................................2411.0010010000
.............................................TTTC--------CTGGCTGT--GAGTGGGTG.......................................................................................................................................................................................................................................................................2111.0010000010
.....................................................................................................................ATGCG-GATGGCA---TACACGC.......................................................................................................................................................................................................1911.0010000010
............................................................................CGTGCGTTTATGTCAGCGCAATGC...............................................................................................................................................................................................................................................2411.0010000010
.....................................................................................................................ATGCG-GATGGCA---TACACGTCCACTA.................................................................................................................................................................................................2511.0010010000
.....................................................................................................................ATGCG-GATGGCA---TACACGTCCAA...................................................................................................................................................................................................2311.0010000100
droYak3
TGG---GTCC---ACCT-----------GGTCCTTTGGGCGCTCTCCTC--------CTTGCTGT--GAGCGGGTGCGTGCGTTGACGTCAGCGCAATGCCTTTGT---TTGTCGGCATGCG-GATGGCG---TACACGTCCACATCCGCAC----ACACACACGCATCTGTA--TCC---------------------------------------------------------------------------------------------------------GCGACCCC-------------------------TGACCCTC-----C-----CCAGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.....................................................................................................................ATGCG-GATGGCG---TACACGTCCACA..................................................................................................................................................................................................241131.001310410021240000
.....................................................................................................................ATGCG-GATGGCG---TACACGTCCA....................................................................................................................................................................................................22181.0081010121760000
.....................................................................................................................ATGCG-GATGGCG---TACACGTCCAC...................................................................................................................................................................................................23141.0041010000400000
.....................................................................................................................ATGCG-GATGGCG---TACACGTCC.....................................................................................................................................................................................................21137.0037200011330000
....................................................................................................................CATGCG-GATGGCG---TACACGTCCA....................................................................................................................................................................................................23114.0014000000140000
....................................................................................................................CATGCG-GATGGCG---TACACGTCC.....................................................................................................................................................................................................2218.00800000080000
....................................................................................................................CATGCG-GATGGCG---TACACGTCCAC...................................................................................................................................................................................................2417.00700000070000
.....................................................................................................................ATGCG-GATGGCG---TACACGTC......................................................................................................................................................................................................2017.00700001050010
....................................................................................................................CATGCG-GATGGCG---TACACGTCCACA..................................................................................................................................................................................................2517.00700010060000
....................................................................................................................CATGCG-GATGGCG---TACACGTC......................................................................................................................................................................................................2114.00400000040000
......................................................................................................................TGCG-GATGGCG---TACACGTCCAC...................................................................................................................................................................................................2213.00300000030000
............................................................................CGTGCGTTGACGTCAGCGCAATG................................................................................................................................................................................................................................................2312.00200000101000
....................................................................................................................CATGCG-GATGGCG---TACACGTCT.....................................................................................................................................................................................................2211.00100000010000
.....................................................................................................................ATGCG-GATGGCG---TACACGTCCACAT.................................................................................................................................................................................................2511.00100000010000
....................................................................................................................CATGCG-GATGGCG---TACACGTT......................................................................................................................................................................................................2111.00100000010000
..............................................................................TGCGTTGACGTCAGCGCAATGCC..............................................................................................................................................................................................................................................2311.00101000000000
.....................................................................................................................ATGCG-GATGGCG---TACACGTCCT....................................................................................................................................................................................................2211.00100000010000
.....................................................................................................................ATGCG-GATGGCG---TACACGTCT.....................................................................................................................................................................................................2111.00100000010000
.....................................................................................................................ATGCG-GATGGCG---TACACGTCCATT..................................................................................................................................................................................................2411.00100000010000
......................................................................................................................TGCG-GATGGCG---TACACGTCCACA..................................................................................................................................................................................................2311.00100000010000
.....................................................................................................................ATGCG-GATGGCG---TACACGTCCC....................................................................................................................................................................................................2211.00100010000000
....................................................................................................................CATGCG-GATGGCG---TACACGT.......................................................................................................................................................................................................2011.00100000010000
droEug1
TGC---GATT---GCCT-----------GCCACT-----------------------CTTTCTGT--GAGTGGGTGCGTGCGTTGACGTCAGCGCAATGCCTTTGT---TTGCCGGCATGCG-GATGGCG---TACACGTCCACATCCGCGC----ACACATTCGCAACAATA--TCCGC---------------ATATGGATTTACAACTGCAGCCCTATCCAC------------------------------------------------ACAGGCATTCGCGATCCC-------------------------TGACCCTT-----G-----CCATSizeHit CountTotal NormTotal
No Reads
droBia1
TTC---CC-----------------------------G--------ATCCCGTTTCCGCACCTGT--GAGTGGGTGCGTGCGTTGACGTCAGCGCAATGCCTTTGT---TGGATGGCATGCG-GATGGCG---TACACGTCCACATCCGCGC----ACATATTCGCATCAGCT--TCC-----------GC----TTCCGCATTCACGGCTGCAGCCCTATCCGC------------------------------------------------ACGGACATCCGCGACCCC-------------------------TGGCCACC-----G-----CCCGSizeHit CountTotal NormTotal
No Reads
droTak1
-------------------------------------------------------------CTGT--GAGTGGGTGCGTGCGTTGACGTCAGCGCAATGCCTTTGT---TTGTCGGCATGCG-GATGGCG---TATACGTCCTCATCCGCAC----ACACATCCGCATCGGCA--TCCAC---------------------ATTTGCAACTGCAGCCATATCCGC------------------------------------------------GCACACATCCGCGCGACC-------------------------TGACCACC-----G-----CCTGSizeHit CountTotal NormTotal
No Reads
droEle1
GG-----TCGATTGGGTGCCTCCTGCAA--TCTGGAGGTCCTTCACGCC--------GGATTTTT--GTGTGTGTGATGGGGTTGGAGTCAGCGCAATGCCATTGT---TTGCCGTCATGCG-GCTGGCT---CGCAGATAGACATCCACAT----CCACATCCGCATCCGCA--T------TACAAGTGCAGCA----------------------AACTTCGC------------------------------------------------CACC-----CCTGACCCC-------------------------TGACCCCTCCCCTG-----CCTGSizeHit CountTotal NormTotal
No Reads
droRho1
TGT---GTTG---G--A-----------GGTCCTTCAG--------ATCCA------GTTTCTGC--GTGTGTGTGTTGGCGTTGGCGTCAGCGCAATGCCATTGT---TTGCCGGCATGTG-GCTGCCG---TGCACGTCCACATCCGCAT----CCGCACCCGCATCCGCA--TCCGCATTACAAGTGCAGCA----------------------ACATCCGC---------------------------------------------------------------TCC-------------------------AGACCCCT-----G-----GCTGSizeHit CountTotal NormTotal
No Reads
droFic1
TG--------------------------------------------------------------T--GTGCGTGTTTCGACGTTGGCGTCAGCGCAGTGCCATTGTTATTTGCCGGCATGCG-GTTGGCG---TGCGCGTCGACATCCGCATTTCTATACAACCATTTCTAC-----------------------TCCTGAATTCT--ACTGCTACT------GC-TGGATGCTACTACTGGATGCTACTGCTGAATGCTACTGCCGAATGCCACT-GCAACTGCGACTCC-------------------------GGA--------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TG--------------------------------------------------------------T--GTGCGTGTGTTATCGTTGGTGTCAGCGCAATGCCGTTGT---TTGCCGGCATGCA-GCTAATG---TCAATGTCTACATCCGCAC----CCGCACTCGCACATCTA-------------GATGCAGTT---------AG------------------TC--------------------------------------------------------CTCAACCCT-------------------------TGGACATCCACCTCCTTGTACAGSizeHit CountTotal NormTotal
No Reads
droAna3
TG--------------------------------------------------------------T--GTGCGTGTGTTGGCGTTGGCGTCAGCGCAATGCCATTGT---TTGCCGGCATGCG-GCTGGCG---TGCACGTCTACATCCGCAC----CTGCATCCACAT--------------AGCAGCTGCAACA----------------------ACA------------------------------------------------------------------AACACGG-----CACT--------------CCGTCTGC-----G-----CCGCSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
........................................................................TGTGTTGGCGTTGGCGTCAG.......................................................................................................................................................................................................................................................201123.00123200510214
........................................................................TGTGTTGGCGTTGGCGTCAGCG.....................................................................................................................................................................................................................................................221122.00122400109414
........................................................................TGTGTTGGCGTTGGCGTCAGC......................................................................................................................................................................................................................................................21191.00912008756
........................................................................TGTGTTGGCGTTGGCGTCA........................................................................................................................................................................................................................................................19146.00466003334
........................................................................TGTGTTGGCGTTGGCGTCAGT......................................................................................................................................................................................................................................................21123.00232000201
....................................................................................................................CATGCG-GCTGGCG---TGCACGTCT.....................................................................................................................................................................................................22122.00226000133
........................................................................TGTGTTGGCGTTGGCGTCAGCT.....................................................................................................................................................................................................................................................22116.00160001150
....................................................................................................................CATGCG-GCTGGCG---TGCACGTCTA....................................................................................................................................................................................................23113.0013200173
....................................................................................................................CATGCG-GCTGGCG---TGCACGTC......................................................................................................................................................................................................21111.0011200360
....................................................................................................................CATGCG-GCTGGCG---TGCACGT.......................................................................................................................................................................................................2019.009200142
........................................................................TGTGTTGGCGTTGGCGTCAGA......................................................................................................................................................................................................................................................2119.009100080
.....................................................................................................................ATGCG-GCTGGCG---TGCACGTCT.....................................................................................................................................................................................................2116.006300030
....................................................................................................................CATGCG-GCTGGCG---TGCACG........................................................................................................................................................................................................1915.005400100
........................................................................TGTGTTGGCGTTGGCGTCAGTT.....................................................................................................................................................................................................................................................2214.004100030
....................................................................................................................CATGCG-GCTGGCG---TGCACGTCTTT...................................................................................................................................................................................................2414.004100210
........................................................................TGTGTTGGCGTTGGCGTCAGCGT....................................................................................................................................................................................................................................................2312.002000020
.....................................................................................................................ATGCG-GCTGGCG---TGCACGTCTAC...................................................................................................................................................................................................2312.002200000
....................................................................................................................CATGCG-GCTGGCG---TGCACGTCTAT...................................................................................................................................................................................................2412.002100010
........................................................................TGTGTTGGCGTTGGCGTCAT.......................................................................................................................................................................................................................................................2012.002000020
.....................................................................................................................ATGCG-GCTGGCG---TGCACGTCTT....................................................................................................................................................................................................2212.002000002
....................................................................................................................CATGCG-GCTGGCG---TGCACGTT......................................................................................................................................................................................................2112.002000110
.........................................................................GTGTTGGCGTTGGCGTCA........................................................................................................................................................................................................................................................1811.001100000
........................................................................TGTGTTGGCGTTGGCGTCAGAT.....................................................................................................................................................................................................................................................2211.001000010
............................................................................TTGGCGTTGGCGTCAGCGCAATGC...............................................................................................................................................................................................................................................2411.001000001
........................................................................TGTGTTGGCGTTGGCGTCAGCA.....................................................................................................................................................................................................................................................2211.001000001
.........................................................................GTGTTGGCGTTGGCGTCAGCT.....................................................................................................................................................................................................................................................2111.001000010
.........................................................................GTGTTGGCGTTGGCGTCAGC......................................................................................................................................................................................................................................................2011.001000001
........................................................................TGTGTTGGCGTTGGCGTCATT......................................................................................................................................................................................................................................................2111.001000010
........................................................................TGTGTTGGCGTTGGCGTCAGAA.....................................................................................................................................................................................................................................................2211.001000010
....................................................................................................................CATGCG-GCTGGCG---TGCAC.........................................................................................................................................................................................................1811.001100000
........................................................................TGTGTTGGCGTTGGCGTCAGG......................................................................................................................................................................................................................................................2111.001000010
....................................................................................................................CATGCG-GCTGGCG---TGCACGA.......................................................................................................................................................................................................2011.001000010
........................................................................TGTGTTGGCGTTGGCGTCAA.......................................................................................................................................................................................................................................................2011.001000010
.......................................................................GTGTGTTGGCGTTGGCGTCAG.......................................................................................................................................................................................................................................................2111.001000010
.....................................................................................................................ATGCG-GCTGGCG---TGCACGTCC.....................................................................................................................................................................................................2111.001000010
.....................................................................................................................ATGCG-GCTGGCG---TGCACGTCTACA..................................................................................................................................................................................................2411.001100000
.........................................................................GTGTTGGCGTTGGCGTCAG.......................................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................ATGCG-GCTGGCG---TGCACGTCTA....................................................................................................................................................................................................2211.001100000
....................................................................................................................CATGCG-GCTGGCG---TGCACGC.......................................................................................................................................................................................................2011.001000010
.........................................................................GTGTTGGCGTTGGCGTCAGT......................................................................................................................................................................................................................................................2011.001000010
....................................................................................................................CATGCG-GCTGGCG---TGCACGTCG.....................................................................................................................................................................................................2211.001100000
........................................................................TGTGTTGGCGTTGGCGTCAC.......................................................................................................................................................................................................................................................2011.001000100
........................................................................TGTGTTGGCGTTGGCGTCAGTA.....................................................................................................................................................................................................................................................2211.001000001
....................................................................................................................CATGCG-GCTGGCG---TGCACGTCTAC...................................................................................................................................................................................................2411.001100000
....................................................................................................................CATGCG-GCTGGCG---TGCACGTCTC....................................................................................................................................................................................................2311.001000010
........................................................................TGTGTTGGCGTTGGCGTCAGTTT....................................................................................................................................................................................................................................................2320.501000010
droBip1
TG--------------------------------------------------------------T--GTGCGTGTGTTGGCGTTGGCGTCAGCGCAATGCCATTGT---TTACCGGCATGCG-GCTGGCG---TGCACGTCTACATCCGCAC----CTGCATTCACAT--------------AGCAGCTGCAACA----------------------ACA------------------------------------------------------------------AACACGGCTCGGCACATCGTCCACCCGGGGTGCTCAAG-----A-----CCTGSizeHit CountTotal NormTotal
No Reads
droVir3
G--------------------------------------------------------------------------------------------------CCATTGT---T--ATGGCAGGTGGGCAGGTGTCATCAATAGCCGCATCCA--G----GCACATCCGCATCCACA--TCCGT--TGCAGGTGTCGCA-------TTTG------------------CC--------------------------------------------------------C-TTACCCT-------------------------TTAGCCGG-----G-----CCGGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
No Reads
droGri2
TT------------------------------------------------------------------------------------------------------------TGAGGGCATGCG-GCAGGTG---TCAACG-CCACGTCCTCAT----TTGCATCCGCTTCCGCA--TCC---------------------------------------------------------------------------------------------------------GCATCCGC-------------------------TGTCGCAT-----T-----TCCCSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 07:01 PM