ID:

dsi_6993

 Coordinate:

3l:7591974-7592123 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-16.7 -16.6 -16.5

Flybase annnotation

five_prime_UTR [3l_7591795_7591943_+]; CDS [3l_7591944_7591973_+]; exon [3l_7591795_7591973_+]; intron [3l_7591974_7592861_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACCCGAGAATCTTGTGAAAATGTACCAGCGGCAGGTCTCCTTTGATAAGGTTTGTTGCTTCGGCGAGAGTCCTCTGTGCACCCGGTATAGAAAGTGATCCGTAAAATAGCTAATAAATTAAAAACAATAACAAGTTTATTATTCTGCGTTCTCAGCATGAACATGTCCAACCTTTGAGGAAAAAAATGCAAATAAATATCATTTTATTATTTTGATTGAAATGAGAAAGCGGATCTATAATCTATAAAA
***********************************************************(((((((((((...(((((((.....)))))))........((((.((((....(((((((.............))))))))))).))))))))).)).))))....(((.........))).******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 O002
Head
 M024
male body		 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
...........................................................TTCGGCGAGAGTCCTCTGTGC.......................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................GCTTCGGCGAGAGTCCTCTGTGCACC....................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0
......AGAATCTTGTGAAAATGTAC................................................................................................................................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
............................................................TCGGCGAGAGTCCTCTGTGCA......................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................TTCGGCGAGGGTCCTCTGTGC.......................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGAACATGTCCAACCTTTGAGGAA.................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GATTGAAATGAGAAAGCGGAT............... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................AGGTTTGTTGCTTCGGCG........................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................TCGGCGAGATTCCTCTGTGCA......................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................AAGCGGATCTATAATCTA..... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....GAGAATCTTGTGAGAATG................................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................CTTCGGCGAGAGTCCTCTGT............................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................CTTCGGCGAGAGTCCTCTGTGC.......................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................AACAAGTTTATTATTCTGC...................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................TTCGGCGAGAGTCCTCTGTGCACC....................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................TGCTTCGGCGAGAGTACTCTGTGTT......................................................................................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0
..................AAATGTACCAGCGGCAGGT..................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
....CGAGAATCTTGTGAAAATGTAC................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................AAGGTTTGATGCTTCGGT......................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0
........................................................TGCTTGGGCGAGAGTA.................................................................................................................................................................................. 16 2 20 0.30 6 0 0 0 0 0 1 3 1 1
.....................................................TGTTGCTTCGGCGGG...................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................AACCTCTGTGGAAAAAAA............................................................... 18 2 18 0.06 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTGGGCTCTTAGAACACTTTTACATGGTCGCCGTCCAGAGGAAACTATTCCAAACAACGAAGCCGCTCTCAGGAGACACGTGGGCCATATCTTTCACTAGGCATTTTATCGATTATTTAATTTTTGTTATTGTTCAAATAATAAGACGCAAGAGTCGTACTTGTACAGGTTGGAAACTCCTTTTTTTACGTTTATTTATAGTAAAATAATAAAACTAACTTTACTCTTTCGCCTAGATATTAGATATTTT
********************************************************************(((((((((((...(((((((.....)))))))........((((.((((....(((((((.............))))))))))).))))))))).)).))))....(((.........))).*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
................................GTCCAGAGGAAACTATTCCAAACA.................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................CTTTCACTAGGCATTTTATCGA.......................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TTCGCCTAGATATTAGATATT.. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................AAACAACGAAGCCGCTCTCA................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................TAGGCATATTACCGATTATTT.................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...............................................TTCCGATCAACGAAGCCG......................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................TAGGCATTTTACCGATCATTTA................................................................................................................................... 22 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................TCGTACTTGAACAGGT................................................................................ 16 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0
...............................................................CCCTATCAGGAGTCACGTGG....................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0
..............................................ATTCCGATCAACGAAGCCGT........................................................................................................................................................................................ 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................TTATCGATTTTTTAATT................................................................................................................................ 17 1 13 0.08 1 0 0 0 0 1 0 0 0 0 0
...............................................TCCCAATCAACGAAGCCGT........................................................................................................................................................................................ 19 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................GTAAAATAATAAAACCCAC............................... 19 2 17 0.06 1 0 0 0 0 0 0 0 1 0 0
...............................................TCCCCATCAACGAAGCCG......................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................TAATTTGTGTTATTATTC................................................................................................................... 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................CTTGTACAGTTCGGAACC......................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:23 AM