ID:

dsi_6921

 Coordinate:

3l:11826532-11826597 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-12.5 -12.2 -11.8 -11.6

Flybase annnotation

CDS [3l_11825745_11826531_-]; exon [3l_11825638_11826531_-]; CDS [3l_11826598_11826761_-]; exon [3l_11826598_11826761_-]; intron [3l_11826532_11826597_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------##################################################
AAGAATGAAGACCTAAAGCGAAAAATATTCAAGAGTCTTTATGGAGAAGGGTAAGTAACTTTAAATAACCTTTCGATTTCGAACGGGTTGTGTATTAAAACGTGACTCTCATGCAGTTCTGACGATGAGGAGCAGCCAGCAGAAGAGAAACCAGCAGTGACACCAG
**************************************************........((....(((((((((((....)))).))))))).......................))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
.....................................................................................................................TCTGACGATGAGGAGCAGCCAGCAGA....................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................GTTCTGACGCTGAGGCGC................................. 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................GTATTAAAACGTGACTCTCATGCA................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................GTTCTGACGCTGAGGA................................... 16 1 2 0.50 1 0 0 0 0 1 0 0 0 0
...................................................................................................................GTTCTGACGCTGAGG.................................... 15 1 6 0.50 3 2 0 0 1 0 0 0 0 0
......................................................................................................................CTGACGCTGAGGAGC................................. 15 1 8 0.50 4 0 0 0 3 0 0 1 0 0
.................................................................................................................CGGTTCTGACGCTGAGGCGC................................. 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0
........................................................................TTGATTTCGAACGGG............................................................................... 15 1 12 0.25 3 3 0 0 0 0 0 0 0 0
..........................................................................................................TCTCATCCAGTTCTGATG.......................................... 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0
.....................................TTTATTGAGAAGGGT.................................................................................................................. 15 1 12 0.17 2 0 0 0 0 2 0 0 0 0
..................................................................................................................................AGCACCCAGCACAAGAGA.................. 18 2 10 0.10 1 0 0 0 1 0 0 0 0 0
.........................................................................................GTGTTTTAAAACGTGA............................................................. 16 1 10 0.10 1 0 0 0 0 0 0 0 1 0
........................................................................TCGATCTCGAACGGG............................................................................... 15 1 11 0.09 1 0 0 0 1 0 0 0 0 0
....................................................................................................................TTCTGACGCTGAGGCGC................................. 17 2 12 0.08 1 1 0 0 0 0 0 0 0 0
.................................................................................................................CAGTTCTGACGATGAGCCC.................................. 19 3 12 0.08 1 0 0 0 0 0 0 0 0 1
....................................................................................................................TCCTGACGCTGAGGAGC................................. 17 2 13 0.08 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTCTTACTTCTGGATTTCGCTTTTTATAAGTTCTCAGAAATACCTCTTCCCATTCATTGAAATTTATTGGAAAGCTAAAGCTTGCCCAACACATAATTTTGCACTGAGAGTACGTCAAGACTGCTACTCCTCGTCGGTCGTCTTCTCTTTGGTCGTCACTGTGGTC
**************************************************........((....(((((((((((....)))).))))))).......................))************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M023
head
 M024
male body		 O002
Head
 M025
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
............................................................................................................AGGACGTCAAGTGTGCTAC....................................... 19 3 20 128.85 2577 686 804 542 196 335 4 0 6 2 0 1 1
............................................................................................................AGGACGTCAAGTGTGCTACT...................................... 20 3 5 115.60 578 245 145 75 49 26 2 30 0 4 2 0 0
.............................................................................................................GGACGTCAAGTGTGCTACT...................................... 19 3 18 19.44 350 196 1 1 98 0 33 17 0 4 0 0 0
...............................................................................................................ACGTCAAGTGTGCTACT...................................... 17 2 20 12.50 250 0 0 0 0 0 236 0 0 1 8 5 0
............................................................................................................AGGACGTCAAGTGTGCTACTC..................................... 21 3 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0
..........................................................................................................ACAGTACGTCAAGTGTGCTAC....................................... 21 3 2 2.00 4 0 2 0 0 1 0 0 1 0 0 0 0
..........................................................................................................ACAGGACGTCAAGTCTGCTAC....................................... 21 3 1 2.00 2 0 0 0 0 0 0 1 1 0 0 0 0
............................................................................................................AGGACGTCAAGTGTGCTACTCC.................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................ACAGTACGTCAAGTGTGCTACT...................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................AGGACGTCAAGAGTGCTACTGC.................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................AGTACGTCAAGTGTGCTACTGC.................................... 22 3 3 0.67 2 0 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................ACGTCAAGTCTGCTACTGC.................................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................AGGACGTCAAGTCTGCTAC....................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................CGTCAAGTCTGCTACTGC.................................... 18 2 4 0.50 2 0 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................AGAGGACGTCAAGTGTGCTACT...................................... 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................ACGTCAAGTGTGCTACTGCT................................... 20 3 7 0.43 3 0 1 0 0 2 0 0 0 0 0 0 0
...........................................................................................................CAGTACGTCAAGTGTGCTAC....................................... 20 3 5 0.40 2 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................ACGTCAAGAGTGCTACTG..................................... 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................GGACGTCAAGAGTGCTACTG..................................... 20 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................AGTACGTCAAGTGTGCTACTG..................................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................TACGTCAAGTGTGCTACT...................................... 18 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................GGAAAGTTAAAGCTTG.................................................................................. 16 1 11 0.18 2 0 0 0 0 0 0 0 0 0 1 1 0
...............................................................................................................ACGTCAAGTGTGCTACTC..................................... 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
..................GCCTTTTATAAGTACTCATAA............................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................GTACGTCAAGTGTGCTAC....................................... 18 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................CGTCAAGTCTGCTACTG..................................... 17 2 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................AGCACGTCAAGTGTGCTAC....................................... 19 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................ACGTCAAGTGTGCTACTCG.................................... 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................ATTGGAAAGCTCATGC..................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
...........GGATTTCGCATTTTAAA.......................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................TTATTGTCATGCTAAAGCTT................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Generated: 04/24/2015 at 10:38 AM