ID:

dsi_6920

 Coordinate:

2r:10532757-10532906 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.5 -16.4 -16.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACTAAATAAAATAGGAGCTGCTTAAGAGTGTGTGTTGTCAAATAGCAAAGTAAACAAAAAGCTCCCCGGACTCGCAATTTCATGCATATCTCCGGCGCAACGATCTGGCAACACCAACAACAACAGCAGCCGCACAAACTGCGTTTTAACCAATTCCATTTCCATTTCCTGCACTTATCTTTCTCGTTTCTTCCAATTAGCGCTGGAAAAGAAACGTCCGCAACGGTTTAAATCCAGTCGAGACGCAAAC
**************************************************..........((...(((((...(((......))).....))))).))(((((..(((.....))).........((((.((((.....)))).........................))))...........)))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR1275487
Male larvae		 SRR1275483
Male prepupae		 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.............................................................................................GGCGTAACGATCTGGGCAC.......................................................................................................................................... 19 3 8 31.75 254 181 71 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................CAATAAGCGGAGGAAAAGAAAC................................... 22 3 7 27.86 195 158 23 8 0 0 1 2 2 1 0 0 0
.............................................................................................GGCGTAACGATCTGGGCA........................................................................................................................................... 18 3 20 4.40 88 70 18 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTTTAAATCCAGTCGAGACGC.... 21 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TTAAATCCAGTCGAGACGC.... 19 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TTTAAATCCAGTCGAGACGC.... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CAGCAGCCGCACAAACTG............................................................................................................. 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................CCGGACTCGCAATTTCATGCAC................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AAAGAAACGTCCGCAACGGTTTAAATCC............... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CCAATAAGCGGAGGAAAAGAAAC................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................TGCTTAAGAGTGTGTGTTGTC................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................ACAGCAGCCGCACAAACTG............................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GGTTTAAATCCAGTCGAGACGCAAAC 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................CATCAGCCGCACAAACTG............................................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GGTTTGAATCCAGTCGA......... 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AATAAGCGGTGGAAAAGAAAC................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGGCGTAACGATCTGGGAAC.......................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TTTAAATCCTGTCGAG........ 16 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................GGCGTAACGATCTGGCCACT......................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AATAAGCGGTGGAAAAGAAACC.................................. 22 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CAATTAGCGGAGGAAAAGAAAC................................... 22 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................TGCGATTATCGCTGGAAAAGA...................................... 21 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................ATTCCAATTCCATTTCTTGC.............................................................................. 20 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................CGGCTTAAATCCAGACGAC........ 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CATTTAGCGGAGGAAAAGAAA.................................... 21 3 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TTTGAATCCAGTCGAGG....... 17 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................CAATAAGCGGCGGAAAAGAAA.................................... 21 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................CGTAACGATCTGGGAACT......................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CAATAAGCGGAGGAAAAGAAA.................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................GCACTTATCTTTCGGGT............................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................GGCGTAACGATCGGGCAC........................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGATTTATTTTATCCTCGACGAATTCTCACACACAACAGTTTATCGTTTCATTTGTTTTTCGAGGGGCCTGAGCGTTAAAGTACGTATAGAGGCCGCGTTGCTAGACCGTTGTGGTTGTTGTTGTCGTCGGCGTGTTTGACGCAAAATTGGTTAAGGTAAAGGTAAAGGACGTGAATAGAAAGAGCAAAGAAGGTTAATCGCGACCTTTTCTTTGCAGGCGTTGCCAAATTTAGGTCAGCTCTGCGTTTG
**************************************************..........((...(((((...(((......))).....))))).))(((((..(((.....))).........((((.((((.....)))).........................))))...........)))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR902008
ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.......................................................................................TAGAGGCCGCGTTGCTAGACC.............................................................................................................................................. 21 0 1 3.00 3 1 2 0 0 0 0 0 0
........................................................................................GGAGGCCGCGTTGCTAGACCG............................................................................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0
........................................................................................AGAGGCCGCGTTGCTAGACCG............................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCTTTGCAGGCGTTGCCAAAT.................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0
................................................................................................CGTTGCTAGACCGTTGTGGTT..................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................TTAGAGGCCGCGTTGCTAGACC.............................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0
....................GAATTCTCACACACAACAGTT................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................GTTGTGGTTGTTGTTGTCGTC......................................................................................................................... 21 0 2 0.50 1 0 0 0 1 0 0 0 0
......................................................................................................TAGGCCGTTGTGGTTGTTGGT............................................................................................................................... 21 2 2 0.50 1 0 0 0 0 1 0 0 0
...........................................................................TTAAAGTAGGTATAG................................................................................................................................................................ 15 1 18 0.17 3 0 0 0 0 0 3 0 0
..........................................................................................................CCGTTGTGTTTGTTGTTG.............................................................................................................................. 18 1 19 0.11 2 2 0 0 0 0 0 0 0
.......................................................................................................................................................TTAAGGTAAAGGTAA.................................................................................... 15 0 15 0.07 1 0 0 0 0 0 0 1 0
...................................................................................................................................................................................AAACAGCAAAGAAGG........................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:10532707-10532956 - dsi_6920 A---CTAAATAAAAT-AGGAGC------T------------------------GCTTAAGAGTGT-GTGTTGTCAA-ATAGCAAAGTAA--ACAAAAAGCTCC---------CCGGACTCGCAAT-TTC-ATG-------------------------------------------------------------CA----------------------------------------------------------------------TATCTCCGGCGCAACGATCTGGCAACACCAACAACAACA---GCA---------GCCG------CAC---AAACTGCGTTTTA---------------ACCAATTCCATTTCCATTTCCTGCACTTA----TC-TTTCTCGTTTCTTC------------------------------------CAATTAGCGCTGGAAAAGAA----------------------------ACGTCCGCAAC----------GGTT---TAAATCCAGTC---GAGACGC-AAAC-------------------------
droSec2 scaffold_239:15006-15255 - A---CTAAATAAAAT-AGGAGC------T------------------------GCTTAAGAGTGT-GTGTTGTCAA-ATAGCAAAGTAA--ACAAAAAGCTCC---------CCGGACTCGCAAT-TTC-ATG-------------------------------------------------------------CA----------------------------------------------------------------------TATCTCCGGCGCAACGATCTGGCAACACCAACAACAACA---GCA---------GCCG------CAC---AAACTGCGTTTTA---------------ACCAATTCCATTTCCATTTCCTGCACTTA----TC-TTTCTCGTTTCTTC------------------------------------CAATTAGCGCTGGAAAAGAA----------------------------ACGTCCGCAAC----------GGTT---TAAATCCAGTC---GAGACGC-AAAC-------------------------
dm3 chr2R:9844806-9845055 - A---CTAAATAAAAT-AGGAGC------T------------------------GCTTAAGAGTGT-GTGTTGTCAA-ATAGCAAAGTAA--ACAAAAAGCTCC---------CCGGACTCGCAAT-TTC-ATG-------------------------------------------------------------CA----------------------------------------------------------------------TATCTCCGGCGCAACGATCTGGCAACACTAACAACAACA---GCA---------GCCG------CAC---AAACTGCGTTTTA---------------ACCAATTCCATTTCCATTTCCTGCACTTA----TC-TTTCTCGTTTCTTC------------------------------------CAATTAGCGCTGGAAAAGTA----------------------------ACGTCCGCAAC----------GGTT---TAAATCCAGTC---GAGACGC-AAAC-------------------------
droEre2 scaffold_4845:15977090-15977345 + A---CTAAATAAAAT-AGGAGC------T------------------------GCTTAAAAGTGT-GTGTTGTCAA-ATAACCAAGTAA--ACAAAAAGCTCC---------CCGGACTCGCAAA-TTC-ATG-------------------------------------------------------------CA----------------------------------------------------------------------TATCTCCGGCGCAACGATCTGGCAACACCAACAACAACA---GCA------GCAGCCA------CACAAGAAACTGCGTTTTA---------------ACCAATTCCATTTCCATTTCCTGCACTTA----TC-TTTCTAGCTTCTTC------------------------------------CAATTAGTGCTGGAAAAGTA----------------------------ACGTCAGTAAC----------GGTT---TAAATCCAGTC---GAGACGC-AAAC-------------------------
droYak3 2R:7109051-7109309 + A---CTAAATAAAAT-AGGAGC------T------------------------GCTTAAAAGTGT-GTGTTGTCAA-ATAACAAAGTAA--ACAAAAAGCTCC---------CCGGACTCGCAAT-TTT-ATG-------------------------------------------------------------CA----------------------------------------------------------------------TATCTCCGGCGCAACGATCTGGCAACACCAACAACAACA---GCAG---TAGCAGCCA------CACAAGAAACTGCGTTTTA---------------ACCAATTCCATTTCCATTTCCTGCACTTA----TC-TATCTCGTTTCTTC------------------------------------CAATTAGTGCTGGAAAAGTA----------------------------ACGTCAGTAAC----------GGTT---TAAATCCAGTC---GAGACGC-AAAC-------------------------
droEug1 scf7180000409462:3000860-3001131 + A---CTGAATAAAAT-AAGAGC------T------------------------GTTAAAAA--GT-GTGTTGTCAA-ATAACAAAGTAA--ACAAAAAGCTTTC--------CGGGATTCGCAAT-ATC-ATA----------------------------------CATG--------------CATATGTA-CA----------------------------------------------------------------------TATCTCCGGCGCAACGATCTGGCAACACCAACAACAACAGAAGCAGTGGCAGCAGCCG------CAAAAGAAACTGCGTTTTA---------------AC-C-----ATTTCCATTTCCTGCACTTA----TC-TTTCTCGTTTCTTC------------------------------------CAATTAGTGCTGAAAA-AAA----------------------------ACGCCAGTAAC----------GGTTATATACATAGAGTC---AAGACGC-AAAC-------------------------
droBia1 scf7180000302291:282933-283175 + A---CTAAC--AAAT-AGGAGC------T------------------------GCT-GAAAGTGT-GTGC-------ATAACAAAGCAA--ACAAAAAGCTTT---------GC-GATTCGCAAT-ATCTAGG-------------------------------------------------------------TA----------------------------------------------------------------------TATCTCCGGCACGTCGGTCTGGCAACACCAACAACAACA---GTA------GCATCCGCATGG-AAAGGCAAACTGCGTCTCA---------------AC-A-----------GTTTCCTGCGCTCACGTACCTTTTCTCATTTCTTC------------------------------------CAATTAGAGCTGAGAAAGAA----------------------------ACACCAGTAA-----------GG-C---TACCTACAGTC---AAGACAC-CAAC-------------------------
droTak1 scf7180000415401:782226-782469 + A---CTAAATAAAAT-AAGAGC------T------------------------GCT-AAAAGTGT-GTGTTGTCAA-ATAACAAAGTAA--ACAAAAAGCTTT---------CCGGACTCGCAA----------------------------------------------------------------------------------------------------------------------------------------------TATCTCCGGC-CAACGATCTGGCAACACCAACAACAACA-GTGCAG--------GCTACATAAGAAAACGAAACTGCGTTTCA---------------GC-C-----------ATTTCCTGCACTCATGTATCTTTTCTCGTCTCTTC------------------------------------CAATTAGTGCTGGGAAAGTA----------------------------ACGCCAGTAAC----------GGTT---TAGCTACAGTC---AAGACAC-AAAC-------------------------
droEle1 scf7180000491271:189054-189286 - A---TTAAATAAAGT-AAGAGT------T------------------------TAA-AAAAGTGT-ATGGTGTCAA-ATAATAAAGTAA--ACAAAAAGCTTT---------GCGGATTCGCAA----------------------------------------------------------------------------------------------------------------------------------------------TATCTTCGGCGCAACGATCTGGCAACACCAACAACAACA---GCA------GCAGCCA------CATAAGAAACTGCGTTTCA---------------AC-C-----------ATTTCCTGCACTTA----TC-GTTCTCCTTTCATC------------------------------------CAATTAGTGCTGGA-AAGTA----------------------------ACGCCAGTTAC----------GGTT---TTAATACAGTC---AAGACGC-GAAC-------------------------
droRho1 scf7180000779260:19664-19901 - A---TAATATGAAAT-AAGAAG------C------------------------GCA-TAGAGTGT-GTATTGTCAA-ATAAGAAAGTAA--ACAAAAAGCTTT---------GCGGATTCGCAA----------------------------------------------------------------------------------------------------------------------------------------------TATCTCCGGCGCAACGATCTGGCAACACCAACAACAAAA-AAGCAG---CAGCAACCA------CATAAGAAACTGCGTTTCA---------------AC-C-----------GTTTCCTGCATTTA----TC-GTTCTCGTTCTTTC------------------------------------CAATTAGAGCTGGAAAAGTA----------------------------AACCCAGTAAC----------GGTT---TAAA-ACAGTT---AAGACGC-GAGC-------------------------
droFic1 scf7180000454066:1764958-1765198 + A---TTAAATAAAGT-AAGAGC------TGCACGAA-------------------A-AACAGTGT-GTGTTGTCAA-ATAACAAAGTAA--ACAAAAAGCTTTT--------TCGAATTCGCAA----------------------------------------------------------------------------------------------------------------------------------------------TATCTCCGGTCTAACGATCTGGCAACACCAACAACAACA---GCA---------GCCA------CACAAGAAACTGCGTTTTA---------------AC-C-----------ATTTCCTGCACTTATGTATC-TTTCTCGTTTCTTC------------------------------------CAATTAGAGCTGGATAAGTA----------------------------AAGCCAGTAAC----------GGTT---TATATCCAGTC---AAGACGC-AAAC-------------------------
droKik1 scf7180000302817:295650-295944 - A---TTAAACAAAAT-AAGAGC------TCCACTCCGAACGGTG------------TGTGTGTGC-GTGTTGTCAA-ATAACAAAATAA--ACAAAAAGCTCT---------TGGAATTCGCAAATTTT-GTTGCCGTACCGCGG-CGCCGACGGCGGCTGCAGCTGTGTG--------------CGTGTC-TC-GTATCTGT----G-----------------------------------------------------------------AGTGCGGCGATCTGGCAGCACCAACAACAACA---GCA-----------CA------CGAAAGAAACTGCGTTTTA---------------AC-C-----------ATTTCCTGCACTTA----TA-TTTCTCGCTTTTAACCATA-AATC--CC-GCA-----GCT---------------------------AGT----------------------------GCACCCGCAAC----------G------TCTATTCGGTG---AGGACGCCAGGC-------------------------
droAna3 scaffold_13266:17155277-17155630 - AAATTTAAATAAAAT-AAGAGC------CACA---------GTGA-AGCA---GCCGAAAATTGT-GTGTTGTCAAAATAACAA-ATAA--ACAAAAAGCTCA---------CGGAATTTGCAAT-TTT-GTTTCCATATC--TGAGCTGTAGGCTGTC------AGTGTA----------------TGTGTAT-GTGTGTGT----GT-----------------------------------------------------------------GTGCGGCGATCTGGCAGCACCAACAACAACA---CCA---------GCCA------CGAAAGAAATTGCGTTTTG---------------GACAA-----TTTCGATTTCCTTCGCCTT----TA-ATTGTCGTTTTTTTCCAACAAATTACCT-GTAATCAAACAAGTGCAATAACAATTACTGCTGAAA--GCAACAAAAA-CTGAATTAAAAAAACAGAAATTGTCGGCC---------TAGGGTT---------TAGTG---AAGACGC-AAAC-------------------------
droBip1 scf7180000396735:413846-414177 - A---TTAAGTAAAAT-AAGTAC------------------------------------AAA--TT-GTGTTGTCAA-ATAAA-AAATAA--ACAAAAAGCTCA---------CGGAATTTGCAAT-TTT-GTTGCCATATT--T------TGAGCTGCATC----GGTGTGCGTGCTTCTGTGCGAGTG-------TGTGCGT----GT-----------------------------------------------------------------GTGCGGCGATCTGGCAGCACCAACAACAACA---GCA---------GCCA------CGAAAGAAATTGCGTTTCG---------------AC-A-TT---TTTCGATTTCCTTCGTCTC----TA-AT---TGTCTTTTCCCAAAAAATTACCT-GTAATCAAACAAGTGCAACAACAACTAGTGCCGAAA--GCCAGAAAAA-CTGAACCATT-ATCCAGAGACCGTGGGCCGT----------GGTT---------TAGTG---GAGACGC-AAAC-------------------------
dp5 3:8158006-8158365 - A---CTGAATAAAAATAC--ACTACATCCATA---------GCGTAGGTAGCGA-G-AAAAAAGT-GTGTTGTCGA-ATAA----ACAA--AAAAAAAGCTTA---------AAAAATTTGCAAT-TTT-GTCGCTGTATC--TG-CCTCTACTCTGCCTT----CGTGTG--------------TGTGTGTTT-GTGTGTAC----GT-----------------------------------------------------------------GTTCAACGATCTGGCAACACCAACAACAACA---GCA---------GCCA------CGAAAGAAATTGCGTTGCGGCGGCAGGCAACGCAAC-C---------GTGTTTCCTGCACTTACATATA-TTTCTTGTTTTTAACCAAAGAATCGTCCCCCA------CTGCTGTCC------------CCAGGA--GCACCAAGAGCCTGAA---TT-AATCAGAGT---TAAGACGTGTCAATCTTTGACG---------GAGTGGAAAAAAAGC-AGGC-------------------------
droPer2 scaffold_4:2035481-2035863 - A---CTGAATAAAAATAC--ACTACA-CCATA---------GCGTAGGTAGCGA-G-AAAAAAGT-GTGTTGTCGA-ATAAACA-------AAAAAAAGCTTA---------AAAAATTTGCAAT-TTT-GTCGCTGTATC--TG-CCTCTACTCTGCCTT----CGTGTG--------------TGTGTGTTT-GTGTGTAC----GT-----------------------------------------------------------------GTTCAACGATCTGGCAACACCAACAACAACA---GCA---------GCCA------CGAAAGAAATTGCGTTGCGGCGGCAGGCAACGCAAC-C---------GTGTTTCCTGCACTTACATATA-TTTCTTGTTTTTAACCAAAGAATCGTCCCCCA------CTGCTGTCC------------TCAGGA--GCACCAAGAGCCTGAA---TT-AATCAGAGT---TAAGACGTGTCAATCTTTGACG---------GAGTGGAAAAAAAGC-AGGCCGACGGCCATTCATTCAGCAAACAA
droVir3 scaffold_12875:6214862-6215090 + A---GTATATAAAAA-ACGT-------------------------CAGCGGCTA-C-AAAATTGTTGTTAAGACAA-ATAAACAAC--A--ACAAAAAAATGAAA-------AGAAATTCGCAAG-TTT-GTTGCCATA---------------------------GTGTG--------------AGTGTGTGC-GTGTGTGT----GA--------GTGCGAGAGAGAGACAGAGCCGTCAAACTGCAGAGAGCAAAAATTACTTTATC-CCG--GTAACGATCTGGCAACACCAACAACAAAA---ACA------GCAGCAG------CAAAAGAAATTGCGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:23817624-23817846 - A---TGAACAAACGT-CAGC-----------------------------GGCTGCAAAAAACTGTTGTTAAGACAA-ATAAACAAATAAGAACAAAAAAATAAATAAAAAAAATAATTTCGCAAG-TTT-ATTGCTGA-----------------------------------------TGTGAGAATG-------TGTGCCTAAACGACTGAGAGAGGGTCAGAGAAAG------------------AGAGAGCAAAAGTTACTTTATC-CCG--GTAACGATCTGGCAACACCAACAACAAAA---ACA---------GCAG------CAAAAGAAATTGCGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15112:1103859-1103896 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAACGATCTGGCAACACCAACAACAAAA---ACA---------GCAG------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
A---CTAAATAAAAT-AGGAGC------T------------------------GCTTAAGAGTGT-GTGTTGTCAA-ATAGCAAAGTAA--ACAAAAAGCTCC---------CCGGACTCGCAAT-TTC-ATG-------------------------------------------------------------CA----------------------------------------------------------------------TATCTCCGGCGCAACGATCTGGCAACACCAACAACAACA---GCA---------GCCG------CAC---AAACTGCGTTTTA---------------ACCAATTCCATTTCCATTTCCTGCACTTA----TC-TTTCTCGTTTCTTC------------------------------------CAATTAGCGCTGGAAAAGAA----------------------------ACGTCCGCAAC----------GGTT---TAAATCCAGTC---GAGACGC-AAAC-------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT---TAAATCCAGTC---GAGACGC-.............................2114.00413000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TAAATCCAGTC---GAGACGC-.............................1913.00312000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TAAATCCAGTC---GAGACGC-.............................2012.00202000000000000000
...............................................................................................................................................................................................................................................................................................................CA---GCA---------GCCG------CAC---AAACTG...........................................................................................................................................................................................................................................1812.00220000000000000000
................................................................................................................CCGGACTCGCAAT-TTC-ATG-------------------------------------------------------------CA----------------------------------------------------------------------C......................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAA----------------------------ACGTCCGCAAC----------GGTT---TAAATCC............................................2811.00100010000000000000
............................T------------------------GCTTAAGAGTGT-GTGTTGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..............................................................................................................................................................................................................................................................................................................ACA---GCA---------GCCG------CAC---AAACTG...........................................................................................................................................................................................................................................1911.00110000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTT---TAAATCCAGTC---GAGACGC-AAAC-------------------------2611.00100000000000010000
droSec2
A---CTAAATAAAAT-AGGAGC------T------------------------GCTTAAGAGTGT-GTGTTGTCAA-ATAGCAAAGTAA--ACAAAAAGCTCC---------CCGGACTCGCAAT-TTC-ATG-------------------------------------------------------------CA----------------------------------------------------------------------TATCTCCGGCGCAACGATCTGGCAACACCAACAACAACA---GCA---------GCCG------CAC---AAACTGCGTTTTA---------------ACCAATTCCATTTCCATTTCCTGCACTTA----TC-TTTCTCGTTTCTTC------------------------------------CAATTAGCGCTGGAAAAGAA----------------------------ACGTCCGCAAC----------GGTT---TAAATCCAGTC---GAGACGC-AAAC-------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................GGAGC------T------------------------GCTTAAGAGTGT-GTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
...................................................................................AAGTAA--ACAAAAAGCTCC---------CCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
................AGGAGC------T------------------------GCTTAAGAGTGT-GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAA----------------------------ACGTCCGCAAC----------GGTT---...................................................2111.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGAA----------------------------ACGTCCGCAAC----------GG........................................................2111.0010100
.....................................................................................................................................................................................................................................................................................CAACGATCTGGCAACACCAACAA.....................................................................................................................................................................................................................................................................................2311.0010001
........ATAAAAT-AGGAGC------T------------------------GCTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
dm3
A---CTAAATAAAAT-AGGAGC------T------------------------GCTTAAGAGTGT-GTGTTGTCAA-ATAGCAAAGTAA--ACAAAAAGCTCC---------CCGGACTCGCAAT-TTC-ATG-------------------------------------------------------------CA----------------------------------------------------------------------TATCTCCGGCGCAACGATCTGGCAACACTAACAACAACA---GCA---------GCCG------CAC---AAACTGCGTTTTA---------------ACCAATTCCATTTCCATTTCCTGCACTTA----TC-TTTCTCGTTTCTTC------------------------------------CAATTAGCGCTGGAAAAGTA----------------------------ACGTCCGCAAC----------GGTT---TAAATCCAGTC---GAGACGC-AAAC-------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................AGGAGC------T------------------------GCTTAAGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000001000
....................GC------T------------------------GCTTAAGAGTGT-GTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCGCTGGAAAAGTA----------------------------...............................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTA----------------------------ACGTCCGCAAC----------GGT.......................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................A----TC-TTTCTCGTTTCTTC------------------------------------CAATTA.........................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCGCTGGAAAAGTA----------------------------ACG............................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAGCGCTGGAAAAGTA----------------------------AC.............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AT-AGGAGC------T------------------------GCTTAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TTTTA---------------ACCAATTCCATTTCCA.....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TA----TC-TTTCTCGTTTCTTC------------------------------------CAATTAG........................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TC-TTTCTCGTTTCTTC------------------------------------CAATTAG........................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCGCTGGAAAAGTA----------------------------ACGTC..........................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
......AAATAAAAT-AGGAGC------T------------------------GCTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCAGTC---GAGACGC-A............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................GTGTTGTCAA-ATAGCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGTTTCTTC------------------------------------CAATTAGCGCTG...................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CTAACAACAACA---GCA---------GCCG------CA.....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTCGTTTCTTC------------------------------------CAATTAG........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AAAAT-AGGAGC------T------------------------GCTTAAGAGTGT-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GGAGC------T------------------------GCTTAAGAGTGT-GTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTTC------------------------------------CAATTAGCGCTGG..................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGTA----------------------------ACGTCCGCAAC----------GG........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAAGTA----------------------------ACGTCCGCAAC----------GGTT---...................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----------GGTT---TAAATCCAGTC---GA...................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCTGGAAAAGTA----------------------------ACGTC..........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AAATAAAAT-AGGAGC------T------------------------GCTTAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
......................................................................................................................................................................................................................................................................................................................A---------GCCG------CAC---AAACTGCGTTT......................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.....................................................GCTTAAGAGTGT-GTGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTA----------------------------ACGTCCGCAAC----------GGTT---...................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
........ATAAAAT-AGGAGC------T------------------------GCTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTA----------------------------ACGTCCGCAAC----------GGTT---T..................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.....................C------T------------------------GCTTAAGAGTGT-GTGTTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CGCAACGATCTGGCAACACTA.........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TATCTCCGGCGCAACGATCTG..................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTGGAAAAGTA----------------------------ACGTCCG........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
............................................................................................................................................................................................................................................................................................................................................C---AAACTGCGTTTTA---------------ACCAATT..............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CCATTTCCTGCACTTA----TC-TTT..............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGTA----------------------------ACGTCCGCAAC----------GGT.......................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CC---------CCGGACTCGCAAT-TTC-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AAAAAGCTCC---------CCGGACTCGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCTGGAAAAGTA----------------------------ACGTCCGC.......................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...............................................................................................................................................................................................................................................................................................GCAACACTAACAACAACA---GCA---------GCCG------.......................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTA----------------------------ACGTCCGCAAC----------GGT.......................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGGAAAAGTA----------------------------ACGTCCG........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.....................................................................................GTAA--ACAAAAAGCTCC---------CCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCAAC----------GGTT---TAAATCCAGTC---GAGACGC-.............................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AGGAGC------T------------------------GCTTAAGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................CTCCGGCGCAACGATCTGGC................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
A---CTAAATAAAAT-AGGAGC------T------------------------GCTTAAAAGTGT-GTGTTGTCAA-ATAACCAAGTAA--ACAAAAAGCTCC---------CCGGACTCGCAAA-TTC-ATG-------------------------------------------------------------CA----------------------------------------------------------------------TATCTCCGGCGCAACGATCTGGCAACACCAACAACAACA---GCA------GCAGCCA------CACAAGAAACTGCGTTTTA---------------ACCAATTCCATTTCCATTTCCTGCACTTA----TC-TTTCTAGCTTCTTC------------------------------------CAATTAGTGCTGGAAAAGTA----------------------------ACGTCAGTAAC----------GGTT---TAAATCCAGTC---GAGACGC-AAAC-------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTC------------------------------------CAATTAGTGCTGG..................................................................................................................2011.0011000000
.........................................................................................................................CAAA-TTC-ATG-------------------------------------------------------------CA----------------------------------------------------------------------TATCTCCGGCG............................................................................................................................................................................................................................................................................................................2311.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAC----------GGTT---TAAATCCAGTC---GAGA.................................2511.0010000100
....................GC------T------------------------GCTTAAAAGTGT-GTGTTGTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
droYak3
A---CTAAATAAAAT-AGGAGC------T------------------------GCTTAAAAGTGT-GTGTTGTCAA-ATAACAAAGTAA--ACAAAAAGCTCC---------CCGGACTCGCAAT-TTT-ATG-------------------------------------------------------------CA----------------------------------------------------------------------TATCTCCGGCGCAACGATCTGGCAACACCAACAACAACA---GCAG---TAGCAGCCA------CACAAGAAACTGCGTTTTA---------------ACCAATTCCATTTCCATTTCCTGCACTTA----TC-TATCTCGTTTCTTC------------------------------------CAATTAGTGCTGGAAAAGTA----------------------------ACGTCAGTAAC----------GGTT---TAAATCCAGTC---GAGACGC-AAAC-------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................GTAA--ACAAAAAGCTCC---------CCGGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTA----------------------------ACGTCAGTAAC----------GGTT---...................................................2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAAC----------GGTT---TAAATCCAGT.........................................2111.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAC----------GGTT---TAAATCCAGT.........................................1911.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTAAC----------GGTT---TAAATCCAGTC---GAG..................................2711.00100000010000
.......................................................................................AA--ACAAAAAGCTCC---------CCGGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.....................................................................................................................................................................................................................................................................................CAACGATCTGGCAACACCAAC.......................................................................................................................................................................................................................................................................................2111.00100000010000
................................................................................................................................................................................................................................................................................................................................GCCA------CACAAGAAACTGCGT........................................................................................................................................................................................................................................1911.00100000010000
.......................................................................................................................................................................................................................................................................................................AACAACAACA---GCAG---TAGCA.................................................................................................................................................................................................................................................................1960.17100100000000
droEug1
A---CTGAATAAAAT-AAGAGC------T------------------------GTTAAAAA--GT-GTGTTGTCAA-ATAACAAAGTAA--ACAAAAAGCTTTC--------CGGGATTCGCAAT-ATC-ATA----------------------------------CATG--------------CATATGTA-CA----------------------------------------------------------------------TATCTCCGGCGCAACGATCTGGCAACACCAACAACAACAGAAGCAGTGGCAGCAGCCG------CAAAAGAAACTGCGTTTTA---------------AC-C-----ATTTCCATTTCCTGCACTTA----TC-TTTCTCGTTTCTTC------------------------------------CAATTAGTGCTGAAAA-AAA----------------------------ACGCCAGTAAC----------GGTTATATACATAGAGTC---AAGACGC-AAAC-------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
A---CTAAC--AAAT-AGGAGC------T------------------------GCT-GAAAGTGT-GTGC-------ATAACAAAGCAA--ACAAAAAGCTTT---------GC-GATTCGCAAT-ATCTAGG-------------------------------------------------------------TA----------------------------------------------------------------------TATCTCCGGCACGTCGGTCTGGCAACACCAACAACAACA---GTA------GCATCCGCATGG-AAAGGCAAACTGCGTCTCA---------------AC-A-----------GTTTCCTGCGCTCACGTACCTTTTCTCATTTCTTC------------------------------------CAATTAGAGCTGAGAAAGAA----------------------------ACACCAGTAA-----------GG-C---TACCTACAGTC---AAGACAC-CAAC-------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
A---CTAAATAAAAT-AAGAGC------T------------------------GCT-AAAAGTGT-GTGTTGTCAA-ATAACAAAGTAA--ACAAAAAGCTTT---------CCGGACTCGCAA----------------------------------------------------------------------------------------------------------------------------------------------TATCTCCGGC-CAACGATCTGGCAACACCAACAACAACA-GTGCAG--------GCTACATAAGAAAACGAAACTGCGTTTCA---------------GC-C-----------ATTTCCTGCACTCATGTATCTTTTCTCGTCTCTTC------------------------------------CAATTAGTGCTGGGAAAGTA----------------------------ACGCCAGTAAC----------GGTT---TAGCTACAGTC---AAGACAC-AAAC-------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
A---TTAAATAAAGT-AAGAGT------T------------------------TAA-AAAAGTGT-ATGGTGTCAA-ATAATAAAGTAA--ACAAAAAGCTTT---------GCGGATTCGCAA----------------------------------------------------------------------------------------------------------------------------------------------TATCTTCGGCGCAACGATCTGGCAACACCAACAACAACA---GCA------GCAGCCA------CATAAGAAACTGCGTTTCA---------------AC-C-----------ATTTCCTGCACTTA----TC-GTTCTCCTTTCATC------------------------------------CAATTAGTGCTGGA-AAGTA----------------------------ACGCCAGTTAC----------GGTT---TTAATACAGTC---AAGACGC-GAAC-------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
A---TAATATGAAAT-AAGAAG------C------------------------GCA-TAGAGTGT-GTATTGTCAA-ATAAGAAAGTAA--ACAAAAAGCTTT---------GCGGATTCGCAA----------------------------------------------------------------------------------------------------------------------------------------------TATCTCCGGCGCAACGATCTGGCAACACCAACAACAAAA-AAGCAG---CAGCAACCA------CATAAGAAACTGCGTTTCA---------------AC-C-----------GTTTCCTGCATTTA----TC-GTTCTCGTTCTTTC------------------------------------CAATTAGAGCTGGAAAAGTA----------------------------AACCCAGTAAC----------GGTT---TAAA-ACAGTT---AAGACGC-GAGC-------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
A---TTAAATAAAGT-AAGAGC------TGCACGAA-------------------A-AACAGTGT-GTGTTGTCAA-ATAACAAAGTAA--ACAAAAAGCTTTT--------TCGAATTCGCAA----------------------------------------------------------------------------------------------------------------------------------------------TATCTCCGGTCTAACGATCTGGCAACACCAACAACAACA---GCA---------GCCA------CACAAGAAACTGCGTTTTA---------------AC-C-----------ATTTCCTGCACTTATGTATC-TTTCTCGTTTCTTC------------------------------------CAATTAGAGCTGGATAAGTA----------------------------AAGCCAGTAAC----------GGTT---TATATCCAGTC---AAGACGC-AAAC-------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
A---TTAAACAAAAT-AAGAGC------TCCACTCCGAACGGTG------------TGTGTGTGC-GTGTTGTCAA-ATAACAAAATAA--ACAAAAAGCTCT---------TGGAATTCGCAAATTTT-GTTGCCGTACCGCGG-CGCCGACGGCGGCTGCAGCTGTGTG--------------CGTGTC-TC-GTATCTGT----G-----------------------------------------------------------------AGTGCGGCGATCTGGCAGCACCAACAACAACA---GCA-----------CA------CGAAAGAAACTGCGTTTTA---------------AC-C-----------ATTTCCTGCACTTA----TA-TTTCTCGCTTTTAACCATA-AATC--CC-GCA-----GCT---------------------------AGT----------------------------GCACCCGCAAC----------G------TCTATTCGGTG---AGGACGCCAGGC-------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
AAATTTAAATAAAAT-AAGAGC------CACA---------GTGA-AGCA---GCCGAAAATTGT-GTGTTGTCAAAATAACAA-ATAA--ACAAAAAGCTCA---------CGGAATTTGCAAT-TTT-GTTTCCATATC--TGAGCTGTAGGCTGTC------AGTGTA----------------TGTGTAT-GTGTGTGT----GT-----------------------------------------------------------------GTGCGGCGATCTGGCAGCACCAACAACAACA---CCA---------GCCA------CGAAAGAAATTGCGTTTTG---------------GACAA-----TTTCGATTTCCTTCGCCTT----TA-ATTGTCGTTTTTTTCCAACAAATTACCT-GTAATCAAACAAGTGCAATAACAATTACTGCTGAAA--GCAACAAAAA-CTGAATTAAAAAAACAGAAATTGTCGGCC---------TAGGGTT---------TAGTG---AAGACGC-AAAC-------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........TAAAAT-AAGAGC------CACA---------GTGA-AGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000020
................AAGAGC------CACA---------GTGA-AGCA---GCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002
..............................................................................................................................................................................................................................................................................................................................................................................................TCCTTCGCCTT----TA-ATTGTCGTT........................................................................................................................................................................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTT---------TAGTG---AAGACGC-AAAC-------------------------2211.001010000
.....................................................................................................................................TCCATATC--TGAGCTGTAGGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................GATTTCCTTCGCCTT----TA-ATTGTCGT.........................................................................................................................................................................2511.001100000
..........................................................................................................................AAT-TTT-GTTTCCATATC--TGAGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
................................................................................................................................................................................................................................................................................................................................GCCA------CGAAAGAAATTGCGTTTT.....................................................................................................................................................................................................................................2211.001000010
.............AT-AAGAGC------CACA---------GTGA-AGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
......AAATAAAAT-AAGAGC------CACA---------GTGA-AGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
................................................................................................................................................................................................................................................................................................................A---CCA---------GCCA------CGAAAGAAATTGCGTTTT.....................................................................................................................................................................................................................................2611.001000010
........................................................................................................................................................................GTA----------------TGTGTAT-GTGTGTGT----GT-----------------------------------------------------------------GTGCGG.........................................................................................................................................................................................................................................................................................................2611.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAATTGTCGGCC---------TAGGGT.......................................................2211.001000010
.........................................GTGA-AGCA---GCCGAAAATTGT-GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
........ATAAAAT-AAGAGC------CACA---------GTGA-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................................................................................................................................................TGTAGGCTGTC------AGTGTA----------------T.....................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGTCGGCC---------TAGGGTT---------T............................................2111.001000010
.....................C------CACA---------GTGA-AGCA---GCCGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
droBip1
A---TTAAGTAAAAT-AAGTAC------------------------------------AAA--TT-GTGTTGTCAA-ATAAA-AAATAA--ACAAAAAGCTCA---------CGGAATTTGCAAT-TTT-GTTGCCATATT--T------TGAGCTGCATC----GGTGTGCGTGCTTCTGTGCGAGTG-------TGTGCGT----GT-----------------------------------------------------------------GTGCGGCGATCTGGCAGCACCAACAACAACA---GCA---------GCCA------CGAAAGAAATTGCGTTTCG---------------AC-A-TT---TTTCGATTTCCTTCGTCTC----TA-AT---TGTCTTTTCCCAAAAAATTACCT-GTAATCAAACAAGTGCAACAACAACTAGTGCCGAAA--GCCAGAAAAA-CTGAACCATT-ATCCAGAGACCGTGGGCCGT----------GGTT---------TAGTG---GAGACGC-AAAC-------------------------SizeHit CountTotal NormTotal
No Reads
dp5
A---CTGAATAAAAATAC--ACTACATCCATA---------GCGTAGGTAGCGA-G-AAAAAAGT-GTGTTGTCGA-ATAA----ACAA--AAAAAAAGCTTA---------AAAAATTTGCAAT-TTT-GTCGCTGTATC--TG-CCTCTACTCTGCCTT----CGTGTG--------------TGTGTGTTT-GTGTGTAC----GT-----------------------------------------------------------------GTTCAACGATCTGGCAACACCAACAACAACA---GCA---------GCCA------CGAAAGAAATTGCGTTGCGGCGGCAGGCAACGCAAC-C---------GTGTTTCCTGCACTTACATATA-TTTCTTGTTTTTAACCAAAGAATCGTCCCCCA------CTGCTGTCC------------CCAGGA--GCACCAAGAGCCTGAA---TT-AATCAGAGT---TAAGACGTGTCAATCTTTGACG---------GAGTGGAAAAAAAGC-AGGC-------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................GTAGGTAGCGA-G-AAAAAAGT-GTGTTGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACG---------GAGTGGAAAAAAAGC-AG...........................2411.0010000000010
..........................................................AAAAAGT-GTGTTGTCGA-AT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTCCCCCA------CTGCTGTCC------------CCAG..................................................................................................................2411.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACG---------GAGTGGAAAAAAAGC-.............................1911.0010000000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA---TT-AATCAGAGT---TAAGA.......................................................................1911.0010000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGACG---------GAGTGGAAAAAAAGC-AGGC-------------------------2711.0010000000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCCTGAA---TT-AATCAGA.................................................................................2011.0010000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCC------------CCAGGA--GCACCAAGAGCCTGA...............................................................................................2611.0010100000000
...................................................................................................................................................................................................GTGTGTAC----GT-----------------------------------------------------------------GTTCAACGATC....................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................TT----CGTGTG--------------TGTGTGTTT-G.............................................................................................................................................................................................................................................................................................................................................................................................1830.3310000001000
droPer2
A---CTGAATAAAAATAC--ACTACA-CCATA---------GCGTAGGTAGCGA-G-AAAAAAGT-GTGTTGTCGA-ATAAACA-------AAAAAAAGCTTA---------AAAAATTTGCAAT-TTT-GTCGCTGTATC--TG-CCTCTACTCTGCCTT----CGTGTG--------------TGTGTGTTT-GTGTGTAC----GT-----------------------------------------------------------------GTTCAACGATCTGGCAACACCAACAACAACA---GCA---------GCCA------CGAAAGAAATTGCGTTGCGGCGGCAGGCAACGCAAC-C---------GTGTTTCCTGCACTTACATATA-TTTCTTGTTTTTAACCAAAGAATCGTCCCCCA------CTGCTGTCC------------TCAGGA--GCACCAAGAGCCTGAA---TT-AATCAGAGT---TAAGACGTGTCAATCTTTGACG---------GAGTGGAAAAAAAGC-AGGCCGACGGCCATTCATTCAGCAAACAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................AAAAGT-GTGTTGTCGA-ATAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAACCAAAGAATCGTCCCCCA------CTGCT......................................................................................................................................2911.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAACCAAAGAATCGTCCCCCA------CTGCC......................................................................................................................................2911.001100000
droVir3
A---GTATATAAAAA-ACGT-------------------------CAGCGGCTA-C-AAAATTGTTGTTAAGACAA-ATAAACAAC--A--ACAAAAAAATGAAA-------AGAAATTCGCAAG-TTT-GTTGCCATA---------------------------GTGTG--------------AGTGTGTGC-GTGTGTGT----GA--------GTGCGAGAGAGAGACAGAGCCGTCAAACTGCAGAGAGCAAAAATTACTTTATC-CCG--GTAACGATCTGGCAACACCAACAACAAAA---ACA------GCAGCAG------CAAAAGAAATTGCGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................AG-TTT-GTTGCCATA---------------------------GTGTG--------------AGTGT...................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................GAAA-------AGAAATTCGCAAG-TTT-G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................CGTCAAACTGCAGAGAGCAAA...............................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ACAACAAAA---ACA------GCAGCAG------CA.....................................................................................................................................................................................................................................................2150.402001000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................GTG--------------AGTGTGTGC-GTGTGTGT----GA--------........................................................................................................................................................................................................................................................................................................................................................................2240.251000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................TGC-GTGTGTGT----GA--------GTGCG...................................................................................................................................................................................................................................................................................................................................................................18110.182000000000020000000000000000000000000000000000000000000000000000
.............................................................................ATAAACAAC--A--ACAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.061001000000000000000000000000000000000000000000000000000000000000
droMoj3
A---TGAACAAACGT-CAGC-----------------------------GGCTGCAAAAAACTGTTGTTAAGACAA-ATAAACAAATAAGAACAAAAAAATAAATAAAAAAAATAATTTCGCAAG-TTT-ATTGCTGA-----------------------------------------TGTGAGAATG-------TGTGCCTAAACGACTGAGAGAGGGTCAGAGAAAG------------------AGAGAGCAAAAGTTACTTTATC-CCG--GTAACGATCTGGCAACACCAACAACAAAA---ACA---------GCAG------CAAAAGAAATTGCGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................GAAAG------------------AGAGAGCAAAAGTTA..........................................................................................................................................................................................................................................................................................................................2011.001000001
......................................................................................................................................................................................................................................................................................AACGATCTGGCAACACCAAC.......................................................................................................................................................................................................................................................................................2011.001100000
............................................................................................................................G-TTT-ATTGCTGA-----------------------------------------TGTGAGAATG-------T............................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................TTCGCAAG-TTT-ATTGCTGA-----------------------------------------TG............................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................................................................GTTAAGACAA-ATAAACAAATAAGAACAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
droGri2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAACGATCTGGCAACACCAACAACAAAA---ACA---------GCAG------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:49 PM