ID:

dsi_6918

 Coordinate:

3r:10739063-10739155 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-15.5 -15.4 -14.7 -14.6

Flybase annnotation

exon [3r_10737921_10739062_+]; CDS [3r_10737921_10739062_+]; CDS [3r_10739156_10739257_+]; exon [3r_10739156_10739257_+]; intron [3r_10739063_10739155_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------##################################################
CGGACTGGGCGGTCTCAGCGAGTCGGAGCTGATAGGCGCTAACGATGCTGGTAAGTTTCAAAACGGTGGGACATCTAGAAGGAAGCTAGACGAATGCCCTTAGATTTTTTTCGGAATTCTAACACGTTATTTCTCTCTTCCAGATGATATAGCATTGAATGGCGCCCACTTGCTGGAGGAGCACGATCTGGTA
**************************************************........................((....(((((..(((..((((....((((.(((.....))).))))...))))...)))..)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.........................................................................TCTAGAAGGAAGCTAGACGAATGCC............................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
....................AGTCAGAGCTGATAGGCGCTA........................................................................................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0
..............................................................................................................................................GATGATATAGCATTGAATGG............................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................GATGATATAGCATTGAATGGC.............................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
CGGACTGGGCGGTCTCAGC.............................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.............CTCAGCGAGTCGGAGCTGATAGGC............................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................TTTTTCGGAATTTTAACAC.................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................TCGGAGCTGATAGGCGCTAACGAT................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................GCCCACTTGCTGGAGGAGCACGATCT.... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..GACTGGGCGGTCTCAGCGAGTCGGAGC.................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......GGGCGGTCTCAGCGAGTCG........................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.....TGGGCGGTCTCAGCGAGTCGGAGCTGA................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........GCGCTGTCGGCGAGTCGG....................................................................................................................................................................... 18 3 20 0.35 7 0 1 0 0 0 0 0 5 1
.......GGCGCTGTCGGCGAGTCGG....................................................................................................................................................................... 19 3 20 0.35 7 0 5 0 2 0 0 0 0 0
.TGACTGGGCGGTCTC................................................................................................................................................................................. 15 1 5 0.20 1 0 1 0 0 0 0 0 0 0
.......GGCGCTGTCAGCGAGTCG........................................................................................................................................................................ 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0
.......................................TAAAGATGCTGGTAAGAT........................................................................................................................................ 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0
.........................................................TCAGCACGGTCGGACATC...................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GCCTGACCCGCCAGAGTCGCTCAGCCTCGACTATCCGCGATTGCTACGACCATTCAAAGTTTTGCCACCCTGTAGATCTTCCTTCGATCTGCTTACGGGAATCTAAAAAAAGCCTTAAGATTGTGCAATAAAGAGAGAAGGTCTACTATATCGTAACTTACCGCGGGTGAACGACCTCCTCGTGCTAGACCAT
**************************************************........................((....(((((..(((..((((....((((.(((.....))).))))...))))...)))..)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...................................................................................................................................AGAGAGAAGGTCTATT.............................................. 16 1 3 0.33 1 1 0 0 0
..CTGACCCGCCAGAGG................................................................................................................................................................................ 15 1 8 0.13 1 0 1 0 0
..........................TCGGCTCGCCGCGATTGCTA................................................................................................................................................... 20 3 10 0.10 1 0 0 1 0
............AGAGTCGCTTAGCCT...................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 1

Generated: 04/24/2015 at 10:47 AM