ID:

dsi_6902

 Coordinate:

4:462667-462816 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.1 -3.0 -3.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
AT_richLow_complexityLow_complexity+
mature
star
  1. dsi_6902  4:462680-462706 +
  2. node_29724:10916-10942 -

Sense Strand Reads

TGGGCGTGGAACGGTTTGTGGGTATATTTGGACGTGGCAAAAAATTGTTTGGTCAATCTATAGAAATTTACAAGCCTAATAAAAATATGAAAAAATATCAAAACATTTTTTACTCGTTTTAATAACAACTGAGCAACATTGAGATTCGATTTAAAATCGAATCTGTACATTTTTATTTATATATATTTTATATTTTTCAGTTGGTAAAAATTGAGCAACTCCCCGATCGCGGATCATGGTCTTCCAAAAT
***************************************************************..........................(((((((........))))))).((((((........))).)))....(((((...)))))......********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR902009
testis
 GSM343915
embryo
 M023
head
 M024
male body
.................................................................................................................................TGAGCAACATTGAGATTCGATTTAAAA.............................................................................................. 27 0 1 34.00 34 20 2 10 2 0 0 0 0 0 0
...................................................................................................................................................................................................................TGAGCAACTCCCCGATCGCGGATCATGG........... 28 0 1 14.00 14 8 6 0 0 0 0 0 0 0 0
..........................................................................................................................TAACAACTGAGCAACATTGAGATTCGA..................................................................................................... 27 0 1 8.00 8 2 0 4 2 0 0 0 0 0 0
......................................................................................................................TTAATAACAACTGAGCAACATTGAGA.......................................................................................................... 26 0 1 8.00 8 3 0 1 2 1 0 0 1 0 0
...................................................................................................................................................................................................................TGAGCAACTCCCCGATCGCGGATCATG............ 27 0 1 7.00 7 1 1 5 0 0 0 0 0 0 0
............................................................................................................................................................................................................TAAAAATTGAGCAACTCCCCGATCGCGGA................. 29 0 1 7.00 7 1 5 0 1 0 0 0 0 0 0
.................................................................................................................................TGAGCAACATTGAGATTCGATTTA................................................................................................. 24 0 1 7.00 7 5 0 1 0 1 0 0 0 0 0
.......................................................................................................................TAATAACAACTGAGCAACATTGAGATT........................................................................................................ 27 0 1 5.00 5 1 0 3 0 1 0 0 0 0 0
.................................................................................................................................TGAGCAACATTGAGATTCGATTTAAA............................................................................................... 26 0 1 5.00 5 4 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................AATTGAGCAACTCCCCGATCGCGGA................. 25 0 1 5.00 5 0 0 0 4 1 0 0 0 0 0
...............................................................AAATTTACAAGCCTAATAAAAATATGA................................................................................................................................................................ 27 0 2 4.50 9 4 1 3 1 0 0 0 0 0 0
.......................................................................................................................TAATAACAACTGAGCAACATTGAGA.......................................................................................................... 25 0 1 4.00 4 2 0 1 1 0 0 0 0 0 0
............................................................................................................................................................TCGAATCTGTACATTTTTATTTATATA................................................................... 27 0 1 4.00 4 1 0 3 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAAAATTGAGCAACTCCCCGATCGCGGA................. 28 0 1 4.00 4 0 2 2 0 0 0 0 0 0 0
............................................................................................................................................................TCGAATCTGTACATTTTTATTTATA..................................................................... 25 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
......................................................................................................................TTAATAACAACTGAGCAACATTGAGATT........................................................................................................ 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TCTGTACATTTTTATTTATATATATT............................................................... 26 0 1 3.00 3 1 1 0 1 0 0 0 0 0 0
..........................TTTGGACGTGGCAAAAAATTGTTTGGTC.................................................................................................................................................................................................... 28 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0
..................................................................................................................................................................................................................TTGAGCAACTCCCCGATCGCGGA................. 23 0 1 3.00 3 0 1 0 1 1 0 0 0 0 0
...................................................................................................................................................................................................................TGAGCAACTCCCCGATCGCGGATCATGGTC......... 30 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGAGCAACTCCCCGATCGCGGATCAT............. 26 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0
............................................................................................................................ACAACTGAGCAACATTGAGATTCGATT................................................................................................... 27 0 1 3.00 3 2 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................TGGTAAAAATTGAGCAACTCCCCGATCGC.................... 29 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0
..........................TTTGGACGTGGCAAAAAATTGTTTGGT..................................................................................................................................................................................................... 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................TAACAACTGAGCAACATTGAGATTCGATT................................................................................................... 29 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AAAATTGAGCAACTCCCCGATCGCGGA................. 27 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0
...............................................................................................TATCAAAACATTTTTTACTCGTTT................................................................................................................................... 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TATTTTATATTTTTCAGTTGGTAAAAA........................................ 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGAGCAACATTGAGATT........................................................................................................ 17 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0
......................................................................................................................................AACATTGAGATTCGATTTAAAATCGA.......................................................................................... 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
........................................................................................................................................................................................................................AACTCCCCGATCGCGGATCATGGTC......... 25 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................TGAGCAACTCCCCGATCGCGGATCA.............. 25 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0
...........................................................................................................................AACAACTGAGCAACATTGAGATTCGATT................................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................TAATAACAACTGAGCAACATTGAGAT......................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTTAATAACAACTGAGCAACATTGAG........................................................................................................... 26 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGTAAAAATTGAGCAAC............................... 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0
.................................................................................................................................................................................TATATATATTTTATATTTTTCAGTTGG.............................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GCAACTCCCCGATCGCGGATCATGGTC......... 27 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0
......TGGAACGGTTTGTGGGTATATTTGGAC......................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGTAAAAATTGAGCAACTCCCCG......................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................TCGGATCTATACATTTTTTTTTATAT.................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............TTGTGGGTATATTTGGACGTGGCAAAA................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................ACTGAGCAACATTGAGATTCGA..................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................TAACAACTGAGCAACATTGAGATT........................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CCCCGATCGCGGATCATGGTCTTCCAAAA. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................TAATAACAACTGAGCAACATTGAGATTCAA..................................................................................................... 30 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CCGATCGCGGATCATGGTCTTCCAAAA. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TATATTTTTCAGTTGGTAAAAATTGA.................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TATATATTTTATATTTTTCAGTTGGTAA........................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................AATAACAACTGAGCAACATTGAGATT........................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................TCAAAACATTTTTTACTCGTTTTAATA.............................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................TATATATATTTTATATTTTTCAGTTGGTAA........................................... 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................TTGGACGTGGCAAAAAATTGTT......................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATTGAGCAACTCCCCGATCGCGGATCA.............. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................TATTTGGACGTGGCAAAAAATTGT.......................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................TCAAAACATTTTTTACTCGT..................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................CGTTTTAATAACAACTGAGCAACATTGAGA.......................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................TAACAACTGAGCAACATTGAG........................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGTAAAAATTGAGCAACTCCCCGA........................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................TGTGGGTATATTTGGACGTGGCAA.................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................TTTAATAACAACTGAGCAACATTGAGA.......................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................TGTTTGGTCAATCTATAGAAATT...................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTAGCAACTCCCCGATCGCGGA................. 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................TGGGTATATTTGGACGTGGCAAAAAA.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................TTGGACGTGGCAAAAAATTGTTTGGTC.................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................TATTTTATATTTTTCAGTTGGTAAAA......................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTAAAATCGAATCTGTACATTTTTATT......................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................ATCGAATCTGTACATTTTTATTTATA..................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................TAACAACTGAGCAACATTGAGAT......................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TATATATTTTATATTTTTCAGTTGGTA............................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................GAGCAACATTGAGATTCGATTTAAAAT............................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................TCAAAACATTTTTTACTCGTTTTA................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TAAAAATTGAGCAACTCCCCGATCGC.................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................AATTGAGCAACTCCCCGATCGCGGATCA.............. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................ACAACTGAGCAACATTGAGATTCGA..................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................TTTAGACGTGGCAAAAAATTGTTTGGT..................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................TCTGTACATTTTTATTTATATATATTT.............................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CCCGATCGCGGATCATGGTCTTCCAAAA. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TATATATTTTATATTTTTCAGTTGGT............................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................TGTGGGTATATTTGGACGTGGCAAA................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TATATTTTTCAGTTGGTAAAAATTGAG................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................CATTTTTTACTCGTTTTAATA.............................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................TTAATAACAACTGAGCAACATTGAG........................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................AAAATATCAAAACATTTTTTACTCGTT.................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TATTTTATATTTTTCAGTTGGTAAA.......................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGAGCAACATTGAGATTCGATTA.................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................TATCAAAACATTTTTTACTCGTT.................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TAACAACTGAGCAACATTGAGATAC....................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TATATTTTATATTTTTCAGTTGGTAAA.......................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......TGGAACGGTTTGTGGGTATATTTGGAA......................................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................TATATTTGGACGTGGCAAAAAATTGTT......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTCAGTTGGTAAAAATTGAGC.................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................ATTGAGCAACTCCCCGATCGCGGA................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TGAGCAACTCCCCGATCGCGGATCATGGT.......... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................TATCAAAACATTTTTTACTCGTTTTAA................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGTAAAAATTGAGCAACTCCCCGAT....................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGGGCAACTCCCCGATCGCGGATCATG............ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................TATATATATTTTATATTTTTCAGTTGGT............................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................ACTGAGCAACATTGAGATTCGATT................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................AAATTTACAATCCTAATAAAACTAT.................................................................................................................................................................. 25 2 16 0.81 13 0 0 0 0 0 0 13 0 0 0
...............................................................AAATTTACAAGCCTAATAAAAATATGAA............................................................................................................................................................... 28 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CCCTATCGCGGATCGTGG........... 18 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0
...............................................................AAATTTTCAAGCCTAATAAAAATATGA................................................................................................................................................................ 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CCGATCGCGGATCAA............. 15 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
...............................................................AAATTTACAAGCCTAATAAAAATATG................................................................................................................................................................. 26 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................TATATATATTTTCCATTTTTCATT................................................. 24 3 14 0.36 5 3 2 0 0 0 0 0 0 0 0
...............................................................AAATTTACAAGCCTAATAAAAATA................................................................................................................................................................... 24 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...............................................................AAATTTACAAGCCTAATAAAAATAT.................................................................................................................................................................. 25 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................AACTCCCCGATCGCC................... 15 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................GAGCAACAATGAGCTTCGA..................................................................................................... 19 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0
...............................................................AAATATACAATCCTAATAAAACTAT.................................................................................................................................................................. 25 3 20 0.10 2 0 0 0 0 0 0 2 0 0 0
................................................................................................................................................................................................................................GCTCGCCGATCACGGTCTT....... 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0
............................................TTGTTTGTTCAATCTAGA............................................................................................................................................................................................ 18 2 13 0.08 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................TACCCGATCGCGGATAGTG............ 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................TATTTTTTAGTTGGTA............................................ 16 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0
..............................................................................ATAAAAATATGAAAAAA........................................................................................................................................................... 17 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

ACCCGCACCTTGCCAAACACCCATATAAACCTGCACCGTTTTTTAACAAACCAGTTAGATATCTTTAAATGTTCGGATTATTTTTATACTTTTTTATAGTTTTGTAAAAAATGAGCAAAATTATTGTTGACTCGTTGTAACTCTAAGCTAAATTTTAGCTTAGACATGTAAAAATAAATATATATAAAATATAAAAAGTCAACCATTTTTAACTCGTTGAGGGGCTAGCGCCTAGTACCAGAAGGTTTTA
**********************************************************************************************..........................(((((((........))))))).((((((........))).)))....(((((...)))))......*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 M023
head
 GSM343915
embryo
........................ATAAACCTGCACCGTTTTTTAACAA......................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................GCGCCAAGTATCAGAGGGT.... 19 3 7 0.71 5 5 0 0 0 0 0
....................................CGTTTTTTAACAAACCAA.................................................................................................................................................................................................... 18 1 3 0.33 1 0 0 1 0 0 0
.......................................................................................................................AGTATGGTTGACTCGATGT................................................................................................................ 19 3 15 0.20 3 3 0 0 0 0 0
..........................................................................................................................................................TAAGCTTGGACATGTAACAA............................................................................ 20 3 8 0.13 1 0 0 0 0 1 0
.......................................................................................................................................TGTATCTCTAAGCTCAAT................................................................................................. 18 2 8 0.13 1 0 0 0 1 0 0
.........................................................................................................AAAAAATGTGCAAAGTTAT.............................................................................................................................. 19 2 12 0.08 1 0 0 0 1 0 0
.......................................................TAGATATCTTTAAATGTT................................................................................................................................................................................. 18 0 16 0.06 1 0 0 0 1 0 0
..............................................................................TATTTATATACTTTTTTATAGTTTT................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
..............................................................CTTTAAATGTTAGGATTCTG........................................................................................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0
........................................................................................................................GTATGGTTGACTCGATGTA............................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:462617-462866 + dsi_6902 TGGGCGTG----------GAACGGTTTGTGGGTAT--ATTTGGACGTGGCAAAAAATTGTTTG-----------------------------------------------GTCAATCTATAGAAA-----------TTTACAAGCCT---------------------------------------------------------------------------------------------------------------A------------------ATAAAAATATGAA------------------------------------------------------------AAAATATCAAA-AC-----------------------------------------------------------------------------------------ATTTTTTACTCGTTTTAATAAC--------------------AACTGAGC-----------------------------AACATTGAGATTCGATTTAAAATC-----------------------------------------------------------------------------------------GAATCTGTACATTTTTATTTA----------TA-------------------TATATTTTAT-----ATTTTTCAGTTGGTAAAAATTGAGCAACTCCCCGATCGCGGATCATGGTCTTCCAAAAT
droSec2 scaffold_30:374754-375002 + TGGGTGTG----------GAACGGTTTGTGGGTAT--ATTTGGACGTGGCAAAAAATTGTTTG-----------------------------------------------GTCAATCTATAGAAA-----------TTTACAAGCCT---------------------------------------------------------------------------------------------------------------A------------------ATAAAAATTTGAA-------------------------------------------------------------AAATATCAAA-AC-----------------------------------------------------------------------------------------ATTTTTTACTCGTTTTAATAAC--------------------AACTGAGC-----------------------------AACATTGAGATTCGATTTAAAATC-----------------------------------------------------------------------------------------TAATCTGTACATTTTTATTTA----------TA-------------------TATATTTTAT-----ATTTTTCAGTTGGTAAAAATTGAGCAACTCCCCGATCGCGGATCATGGTCTTCCAAAAT
dm3 chr4:652046-652302 + GAGTT-TT----------GAGCGGCTTGTGGGTATTAGACTGGACATGGCAAAAAATTGTTTG-----------------------------------------------GCCAATCTATAGAAA-----------TTTACAAGCCA---------------------------------------------------------------------------------------------------------------A------------------ATAAAAATATGAA------------------------------------------------------------AATATATCAAA-AC-----------------------------------------------------------------------------------------TTTTTTTACTCGTTTTAATAAT--------------------AGTTGAGC-----------------------------AACATTTAGATTCCATATAAAATC-----------------------------------------------------------------------------------------GAATCTAGACATTTATATTTG----TATATATT-------------------TATATTTTTA-----ATTTTTCAGTTGGTAAAAATTGAGCAACTCCCCGATCGCGGATCATGGTCTTCCAAAAT
droEre2 scaffold_4845:3236938-3237137 + TGTGCGA-----------------TTTGTGGGCGTT-GAGTGGGCGTGGCAAAAATTATTTTG-----------------------------------------------ACAAATATATAGAAA-----------TTTACAAGATG---------------------------------------------------------------------------------------------------------------T------------------ATAAAAA-GTGAA------------------------------------------------------------AAAATAAC----ACATTTTTCAAACGTGTGGGCGTGATAAATTTGGGCGGCTTGTGGGCGTTGGA------------------------------------------------------------------------------------------------------------------------------TTGG---CAA----------------------------------------------------------------------------------------------AAATCTATATATATGTATGTA----------CA-------------------TATACATAAA-----AAT--CTATTTGGCAAA------------------------------------------
droYak3 X:4723971-4724194 + TGTGGGCGTGGCAGCTTTGGGCGGTTTGTGGGCGTTAGAGTGGGCGTGGCAAAAAGTTTTTTT-----------------------------------------------GCAAATCGATAGAAA-----------TTTACAAGACC---------------------------------------------------------------------------------------------------------------A------------------ATACAAAAATGAAAATAATGAAATTAATAATAATTAAAGTTTCAAATTTAGTCAATTTTGCAAT----------------------------------------------------------------------------------------TTTTTCTTCAAA------ATATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------TTT--T-----ATTCTTCC-------------GTGCAGACAAACAGATGTGGATCATAATCTTATGTTAT
droEug1 scf7180000407987:22193-22327 + ATAAGGTT----------------------------------------------------------------------------------------------------------GTTG------------------------------------------AT--------------AACATATCAAAATATCAAT------------------------------------------------------------------------------------AT--------------------------------------------------------------------------ATCGAT-AT--------------------------------------------------------------------------------------------------TTTTTCTAAAAAT--------------------GATAT-------------------------------------------------------------------------------------------ACTTATATAT--ATTATTTTGGC-C----------------------AAATATCGAAATC--ATATTTTTTTTTA----------TA-------------------TTTTTTTGAT-----ATTTTTTCCTTG---------------------------------------------GT
droBia1 scf7180000301298:3456-3672 - TTTGGGG------------------------GCATTAAAGTGGGCGTGGCAAACAATTTTTAG-----------------------------------------------GTCAATCAAAAGGTT-----------TTAGTGAGACA---------------------------------------------------------------------------------------------------------------A------------------ATACATTTTTGCT-----------------------------------------------TAAAACAATTTCT------------------------------AGAATGACAGTTTTTGGCAGTTTGTGAGCGTAAGAATGGGAGTGGCACACTTTTCTGAAATAAATTGATTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-----GTTTTTCTGTCATAAAAACTGTAGGCGCT-ACAGACTGCGGATTGTGGTC---------
droTak1 scf7180000410580:52514-52664 + AATTTTCA----------------------------------------------------------------------------------------------------------CTTT------------------------------------------AAAAAAATTTAAAAAATGCGT--------------------------------------------------------------------------------------------------ATAAAAATGTATCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATAAATAAGTAATACATGC-------------------------------------ATA-----------------------TATTA--TAATTTTAT-----------------------------ACCTTTATACATCGATT-TTTTA--------TT-------------------TACATTTTAT-----ATTAGACAATTATAGCAAATTAAGCAATTTC----------------------------
droEle1 scf7180000491272:1280899-1281124 + CTTACGGA----------AAGTAGTTTTTAAGTTT--TTTTCCCC-----------------------------------------------------------------------TT------------------------------------------AAAAG------------------------------------------------ATAAAAAAATAGTTGGTTCTTTTCCAA-TTCAGAAT------TCGG----G-------------TTTTAAATTTTAA------------------------------------------------------------AAAATATCTTCTGT-----------------------------------------------------------------------------------------ATTATTAAGCTGCCATAGAAAC--------------------GATTGAAA-----------------------------AATTCGAATATTCGACAAAGCTT---------------------------------------------------------CAAT-----------------------------GCCTTTAAACATTTATT-ATATATATATATATT-------------------TATATTATAT-----ATTTTTGAATTGCTCAAG---------------------------------------AT
droRho1 scf7180000778078:3972-4167 + GGTTT----------------------TTGGGCGTTAGAGTGGGCGTGGCAAACTTTTATTAG-----------------------------------------------GCCAATCGATATTTA-----------TTGACGAAACA---------------------------------------------AATACAT-------------------------------------AT------------------CAA------------------TTAAAATTTTCA--------------------------------------------------------------TAATATCA----------TCAAAAC-----------------------------------------------------------------------------TGTGGCCACCATTTTGAAACAA--------------------ACTTGCGC-----------------------------TGCGTAGAAACTC---CTAAAATC-----------------------------------------------------------------------------------------TA-CATGCAAAATGCCAATCC----------TC-------------------TAGCTTTTAT-----AGTTTCC----------------------------------------------------
droFic1 scf7180000454040:243738-243843 + AGAATTAA------------------------TTTTAAAAAGAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGCTATT-----------------------------------------------------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA----------CA-------------------ATTTTTATTT-----TGGTTTCAGTTGGTTAAAATGGAACAACTGCCCGAACGTGGATCGTGGTCCTCCAAAAT
droKik1 scf7180000302258:484545-484738 - TAATAAAA----------------------------------------------------------------------------------------------------------CCAT------------------------------------------TGAAAATTATCA-------------------------------------------------ACAATTCGTTTTCTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTTAATAAT--------------------GAATGCAC-----------------------------CAAATTTATATTCAAATTGAAATTGATTAAGTCATCATTTTCGG-CTT-G-----------------------------------------------------------------AGCC--ATAAAATTATTAA----------TATAAATTCAAT---------AATTTTTGAG-----GGAATTCAATTAA------------TTCCATCAAATCACAGCGCATAAAATGCCAAA--
droAna3 scaffold_13499:1164550-1164713 + ATATAAAC----------AGATATTATTCAGATT------------GAACAGAAATAT-TTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACATTTC-----------------------------------------------------------------------------------------------------AGGTATAAAACAT--------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAAGTA-----------------------------------------------------------------------------------------AATTTTATTTATTTTTATATT----------TT-------------------ATAATTTTAT-----AA-TTTCAGCTTATTAAACTTCAGCCCCTTCCTGAACGTGGATCATGGTCTTCAAAGCT
droBip1 scf7180000395042:2163-2346 + TACCAAAA----------------------------------------------------------------------------------------------------------CATT--------------------------------------------------------------------------TATACATTTATTCCCTCTAGCATTTATGGATACATTGTTCTTTACTTAATATCGCATATGTATTCGT----AATGATGGTATTTACAAAAAGCT-------GACA-----------------------------------------------------ATAATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-------------------TAAAACTGTT-----ATTTTTCAGCTCATTAAAATTCAGTCCCTGCCTGAACGTGGATCGTGGTCATCAAAGTT
dp5 XR_group6:11611825-11611948 - TAAAAAAA----------------------------------------------------------------------------------------------------------AA----------------------AACATACAT---------------------------------------------------------------------------------------------------------------A------------------ATAAAATCGGGAA------------------------------------------------------------AAAACATTAAA-AA-----------------------------------------------------------------------------------------ATTTT------------------------------------------------------------------------------------------------------------------------------------------------------GATTTTAAGCCGTGTTATTTCAAAACCGTGTAAAAACAAAATA----AGGTGTATATT----------TA-------------------CATATTTTAC-----GTTTTTC----------------------------------------------------
droPer2 scaffold_30:373804-373971 - GTGCCAAA---------------------------------------------ATATAGTTTG--------------------------------------------------CATTTGTACAAAGTGCTACGACGTTTGGAAGCTT---------AACAAT--------------TACGT--------------------------------------------------------------------------------------------------GTCAAAGTTTAACTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------GTTCAGGTGCATATTTTCGT-GCTAAAAACAAAATATTGTTATAT--T---------------------------------------------T--TATATTTTATTTTT----------TA-------------------TTTATTTTAT-----ATTTTTGGATTAATAAA------------------------------------------
droWil2 scf2_1100000004762:2677190-2677399 - CGTGCAGG-----------AAAAGTTTGTA----------TTTGCAAAGCAAAA-------------------------------------------------------------------GATA-----------TAATC--------------------GAAAATTAAA----------------------------------------------------------------------------AT------ACAACTTTG-------------TTTTATAATCTGT------------------------------------------------------------AAAATATATTTTAC-------------------------------------------------------------------------------------------------------------ATACTTGCTCTAACTATAAAACTATAA-AAAACACGCACCTTTTTATGCATATGT-ATATA--TTT-----------------------------------ATA-----------------------TAT------------------------------------------AAATATATATATATATATATA----------CGTTA-------TTATATATATATATTTTAT-----AATATTC----------------------------------------------------
droVir3 scaffold_13049:16869610-16869775 + ATATAAAA----------------------------------------------------------------------------------------------------------ACTT------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTGAAAACATATTTTATTTTCTAATATATCCTAT------------------------------CGAAACCCAGCACCAAGTAT--------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAAATT-----------------------------------------------------------------------------------------AATACATTTCATTTTTATGTG----------T----------------------TATTAAAT-----TAATTGCAGCTAACTAAAATCA---TCCTGCCAGAGCGTGGAAGTTGGAGTTCTAAATT
droMoj3 scaffold_6540:3601693-3601934 + AAAATGTT----------TGACGTTTTGAGGACA------------TGACAGAAGCAG-TATACATATATGAAGAAAATTTAATACAAATATCATAAAATAAACAGTTTAATGAG--TATAAATA-----------TTCACAGATTCAATGGGAACATTCATAAAAGTCTATGAAATGCTT--------------------------------------------------------------------------------------------------AAAGAAA--AATCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGAAATAAAATACAAATAT-------------------------------------AGG-----------------------AAGTG--TAAGAGTAC-----------------------------GAATCTGTATATTTATTTGTA----------TA-------------------TAAATTTACT-----GCATTTCATTTAG----------------------------------------------
droGri2 scaffold_14624:1298884-1298986 + AATGCCGA----------------------------------------------------------------------------------------------------------CA-----------------------------GA---------------------------------------------AATACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------TAAG-AT-----------------------------------------------------------------------------------------TAAGTTTACTT-------------------------------------------------------------------------------------------------------------------------------GTTATTATGT--A-----------------------------------------TTGTTTTTATATTTTTATTTA----------TA-------------------TACATTTTATTTAATACTTTTGGGTTACTGAGA-----------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGGGCGTG----------GAACGGTTTGTGGGTAT--ATTTGGACGTGGCAAAAAATTGTTTG-----------------------------------------------GTCAATCTATAGAAA-----------TTTACAAGCCT---------------------------------------------------------------------------------------------------------------A------------------ATAAAAATATGAA------------------------------------------------------------AAAATATCAAA-AC-----------------------------------------------------------------------------------------ATTTTTTACTCGTTTTAATAAC--------------------AACTGAGC-----------------------------AACATTGAGATTCGATTTAAAATC-----------------------------------------------------------------------------------------GAATCTGTACATTTTTATTTA----------TA-------------------TATATTTTAT-----ATTTTTCAGTTGGTAAAAATTGAGCAACTCCCCGATCGCGGATCATGGTCTTCCAAAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGC-----------------------------AACATTGAGATTCGATTTAAAA.........................................................................................................................................................................................................................27134.00340000002210200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAACTCCCCGATCGCGGATCATGG...........28114.001400000006080000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAC--------------------AACTGAGC-----------------------------AACATTGAGATTCGA................................................................................................................................................................................................................................2718.00800000020420000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATAAC--------------------AACTGAGC-----------------------------AACATTGAGA.....................................................................................................................................................................................................................................2618.00800000020131100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAACTCCCCGATCGCGGATCATG............2717.00700000001510000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAATTGAGCAACTCCCCGATCGCGGA.................2917.00700000015010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGC-----------------------------AACATTGAGATTCGATTTA............................................................................................................................................................................................................................2417.00700000000151000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAC--------------------AACTGAGC-----------------------------AACATTGAGATT...................................................................................................................................................................................................................................2715.00500000000311000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGC-----------------------------AACATTGAGATTCGATTTAAA..........................................................................................................................................................................................................................2615.00500000000140000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGAGCAACTCCCCGATCGCGGA.................2515.00500000040001000000
..........................................................................................................................AAA-----------TTTACAAGCCT---------------------------------------------------------------------------------------------------------------A------------------ATAAAAATATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2724.50900000011340000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAC--------------------AACTGAGC-----------------------------AACATTGAGA.....................................................................................................................................................................................................................................2514.00400000010120000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------------------------------------------------------------------------------------GAATCTGTACATTTTTATTTA----------TA-------------------TA........................................................................2714.00400000000310000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATTGAGCAACTCCCCGATCGCGGA.................2814.00400000002200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------------------------------------------------------------------------------------GAATCTGTACATTTTTATTTA----------TA-------------------..........................................................................2513.00300000001020000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATAAC--------------------AACTGAGC-----------------------------AACATTGAGATT...................................................................................................................................................................................................................................2813.00300000000030000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTACATTTTTATTTA----------TA-------------------TATATT....................................................................2613.00300000011010000000
......................................TTTGGACGTGGCAAAAAATTGTTTG-----------------------------------------------GTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.00300000030000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCAACTCCCCGATCGCGGA.................2313.00300000011001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAACTCCCCGATCGCGGATCATGGTC.........3013.00300000002100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAACTCCCCGATCGCGGATCAT.............2613.00300000002010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--------------------AACTGAGC-----------------------------AACATTGAGATTCGATT..............................................................................................................................................................................................................................2713.00300000000021000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAATTGAGCAACTCCCCGATCGC....................2912.00200000011000000000
......................................TTTGGACGTGGCAAAAAATTGTTTG-----------------------------------------------GT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000000110000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAC--------------------AACTGAGC-----------------------------AACATTGAGATTCGATT..............................................................................................................................................................................................................................2912.00200000000110000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGAGCAACTCCCCGATCGCGGA.................2712.00200000001000001000
..................................................................................................................................................................................................................................................................................................................................................................TATCAAA-AC-----------------------------------------------------------------------------------------ATTTTTTACTCGTTT...............................................................................................................................................................................................................................................................................................................2412.00200000001010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTAT-----ATTTTTCAGTTGGTAAAAA........................................2712.00200000000020000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGC-----------------------------AACATTGAGATT...................................................................................................................................................................................................................................1712.00200000000002000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATTGAGATTCGATTTAAAATC-----------------------------------------------------------------------------------------GA............................................................................................................................2612.00200000020000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCCCGATCGCGGATCATGGTC.........2512.00200000000011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAACTCCCCGATCGCGGATCA..............2512.00200000000000020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--------------------AACTGAGC-----------------------------AACATTGAGATTCGATT..............................................................................................................................................................................................................................2812.00200000002000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAC--------------------AACTGAGC-----------------------------AACATTGAGAT....................................................................................................................................................................................................................................2612.00200000000020000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATAAC--------------------AACTGAGC-----------------------------AACATTGAG......................................................................................................................................................................................................................................2612.00200000001100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAATTGAGCAAC...............................1812.00200000000002000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------TA-------------------TATATTTTAT-----ATTTTTCAGTTGG..............................................2712.00200000000020000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTCCCCGATCGCGGATCATGGTC.........2712.00200000011000000000
......TG----------GAACGGTTTGTGGGTAT--ATTTGGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAATTGAGCAACTCCCCG.........................2411.00100000000100000000
.........................TTGTGGGTAT--ATTTGGACGTGGCAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGC-----------------------------AACATTGAGATTCGA................................................................................................................................................................................................................................2211.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAC--------------------AACTGAGC-----------------------------AACATTGAGATT...................................................................................................................................................................................................................................2411.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCGATCGCGGATCATGGTCTTCCAAAA.2911.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATCGCGGATCATGGTCTTCCAAAA.2711.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-----ATTTTTCAGTTGGTAAAAATTGA....................................2611.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-------------------TATATTTTAT-----ATTTTTCAGTTGGTAA...........................................2811.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAC--------------------AACTGAGC-----------------------------AACATTGAGATT...................................................................................................................................................................................................................................2611.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................TCAAA-AC-----------------------------------------------------------------------------------------ATTTTTTACTCGTTTTAATA..........................................................................................................................................................................................................................................................................................................2711.00100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------TA-------------------TATATTTTAT-----ATTTTTCAGTTGGTAA...........................................3011.00100000010000000000
.......................................TTGGACGTGGCAAAAAATTGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGCAACTCCCCGATCGCGGATCA..............2711.00100000000010000000
..................................T--ATTTGGACGTGGCAAAAAATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................TCAAA-AC-----------------------------------------------------------------------------------------ATTTTTTACTCGT.................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTTAATAAC--------------------AACTGAGC-----------------------------AACATTGAGA.....................................................................................................................................................................................................................................3011.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAC--------------------AACTGAGC-----------------------------AACATTGAG......................................................................................................................................................................................................................................2111.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAATTGAGCAACTCCCCGA........................2511.00100000000010000000
..........................TGTGGGTAT--ATTTGGACGTGGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATAAC--------------------AACTGAGC-----------------------------AACATTGAGA.....................................................................................................................................................................................................................................2711.00100000001000000000
.........................................................TGTTTG-----------------------------------------------GTCAATCTATAGAAA-----------TT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000100000000
............................TGGGTAT--ATTTGGACGTGGCAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
.......................................TTGGACGTGGCAAAAAATTGTTTG-----------------------------------------------GTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTAT-----ATTTTTCAGTTGGTAAAA.........................................2611.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATC-----------------------------------------------------------------------------------------GAATCTGTACATTTTTATT...........................................................................................................2711.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC-----------------------------------------------------------------------------------------GAATCTGTACATTTTTATTTA----------TA-------------------..........................................................................2611.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAC--------------------AACTGAGC-----------------------------AACATTGAGAT....................................................................................................................................................................................................................................2311.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-------------------TATATTTTAT-----ATTTTTCAGTTGGTA............................................2711.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGC-----------------------------AACATTGAGATTCGATTTAAAAT........................................................................................................................................................................................................................2711.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................TCAAA-AC-----------------------------------------------------------------------------------------ATTTTTTACTCGTTTTA.............................................................................................................................................................................................................................................................................................................2411.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAATTGAGCAACTCCCCGATCGC....................2611.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGAGCAACTCCCCGATCGCGGATCA..............2811.00100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--------------------AACTGAGC-----------------------------AACATTGAGATTCGA................................................................................................................................................................................................................................2511.00100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTACATTTTTATTTA----------TA-------------------TATATTT...................................................................2711.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCGCGGATCATGGTCTTCCAAAA.2811.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-------------------TATATTTTAT-----ATTTTTCAGTTGGT.............................................2611.00100000010000000000
..........................TGTGGGTAT--ATTTGGACGTGGCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-----ATTTTTCAGTTGGTAAAAATTGAG...................................2711.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------------------------------------------------------------ATTTTTTACTCGTTTTAATA..........................................................................................................................................................................................................................................................................................................2111.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATAAC--------------------AACTGAGC-----------------------------AACATTGAG......................................................................................................................................................................................................................................2511.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................AAAATATCAAA-AC-----------------------------------------------------------------------------------------ATTTTTTACTCGTT................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTAT-----ATTTTTCAGTTGGTAAA..........................................2511.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGC-----------------------------AACATTGAGATTCGATTA.............................................................................................................................................................................................................................2311.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................TATCAAA-AC-----------------------------------------------------------------------------------------ATTTTTTACTCGTT................................................................................................................................................................................................................................................................................................................2311.00100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTTTAT-----ATTTTTCAGTTGGTAAA..........................................2711.00100000000010000000
......TG----------GAACGGTTTGTGGGTAT--ATTTGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
................................TAT--ATTTGGACGTGGCAAAAAATTGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTGGTAAAAATTGAGC..................................2111.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGCAACTCCCCGATCGCGGA.................2411.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAACTCCCCGATCGCGGATCATGGT..........2911.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................TATCAAA-AC-----------------------------------------------------------------------------------------ATTTTTTACTCGTTTTAA............................................................................................................................................................................................................................................................................................................2711.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAATTGAGCAACTCCCCGAT.......................2611.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------TA-------------------TATATTTTAT-----ATTTTTCAGTTGGT.............................................2811.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGC-----------------------------AACATTGAGATTCGATT..............................................................................................................................................................................................................................2411.00100000000010000000
..........................................................................................................................AAA-----------TTTACAAGCCT---------------------------------------------------------------------------------------------------------------A------------------ATAAAAATATGAA------------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATCGCGGATCAA.............1520.50100000000001000000
..........................................................................................................................AAA-----------TTTACAAGCCT---------------------------------------------------------------------------------------------------------------A------------------ATAAAAATATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000000001000000
..........................................................................................................................AAA-----------TTTACAAGCCT---------------------------------------------------------------------------------------------------------------A------------------ATAAAAATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.33100000001000000000
..........................................................................................................................AAA-----------TTTACAAGCCT---------------------------------------------------------------------------------------------------------------A------------------ATAAAAATAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.33100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCCCGATCGCC...................1570.14100000000010000000
.....................................................................................................................................................................................................................................................................................ATAAAAATATGAA------------------------------------------------------------AAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
droSec2
TGGGTGTG----------GAACGGTTTGTGGGTAT--ATTTGGACGTGGCAAAAAATTGTTTG-----------------------------------------------GTCAATCTATAGAAA-----------TTTACAAGCCT---------------------------------------------------------------------------------------------------------------A------------------ATAAAAATTTGAA-------------------------------------------------------------AAATATCAAA-AC-----------------------------------------------------------------------------------------ATTTTTTACTCGTTTTAATAAC--------------------AACTGAGC-----------------------------AACATTGAGATTCGATTTAAAATC-----------------------------------------------------------------------------------------TAATCTGTACATTTTTATTTA----------TA-------------------TATATTTTAT-----ATTTTTCAGTTGGTAAAAATTGAGCAACTCCCCGATCGCGGATCATGGTCTTCCAAAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
GAGTT-TT----------GAGCGGCTTGTGGGTATTAGACTGGACATGGCAAAAAATTGTTTG-----------------------------------------------GCCAATCTATAGAAA-----------TTTACAAGCCA---------------------------------------------------------------------------------------------------------------A------------------ATAAAAATATGAA------------------------------------------------------------AATATATCAAA-AC-----------------------------------------------------------------------------------------TTTTTTTACTCGTTTTAATAAT--------------------AGTTGAGC-----------------------------AACATTTAGATTCCATATAAAATC-----------------------------------------------------------------------------------------GAATCTAGACATTTATATTTG----TATATATT-------------------TATATTTTTA-----ATTTTTCAGTTGGTAAAAATTGAGCAACTCCCCGATCGCGGATCATGGTCTTCCAAAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTCCCCGATCGCGGATC...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCTTGTGGGTATTAGACTGGACATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATGGTCTTCCAAAA.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAATTGAGCAACTCCCC..........................2111.0010000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................ACAAGCCA---------------------------------------------------------------------------------------------------------------A------------------ATAAAAATATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTGGTAAAAATTGAGCAACTCCCC..........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAACTCCCCGATCGCGGATC...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAACTCCCCGATCGCGG..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAATTGAGCAACTC.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTTTTAATAAT--------------------AGTTGA..............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGATCATGGTCTTCCA....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----ATTTTTCAGTTGGTAAAGG........................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTTG----TATATATT-------------------TAT.......................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TGTGCGA-----------------TTTGTGGGCGTT-GAGTGGGCGTGGCAAAAATTATTTTG-----------------------------------------------ACAAATATATAGAAA-----------TTTACAAGATG---------------------------------------------------------------------------------------------------------------T------------------ATAAAAA-GTGAA------------------------------------------------------------AAAATAAC----ACATTTTTCAAACGTGTGGGCGTGATAAATTTGGGCGGCTTGTGGGCGTTGGA------------------------------------------------------------------------------------------------------------------------------TTGG---CAA----------------------------------------------------------------------------------------------AAATCTATATATATGTATGTA----------CA-------------------TATACATAAA-----AAT--CTATTTGGCAAA------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................TTTTTCAAACGTGTGGGCGT..................................................................................................................................................................................................................................................................................................................................................................................................2060.1710100000
droYak3
TGTGGGCGTGGCAGCTTTGGGCGGTTTGTGGGCGTTAGAGTGGGCGTGGCAAAAAGTTTTTTT-----------------------------------------------GCAAATCGATAGAAA-----------TTTACAAGACC---------------------------------------------------------------------------------------------------------------A------------------ATACAAAAATGAAAATAATGAAATTAATAATAATTAAAGTTTCAAATTTAGTCAATTTTGCAAT----------------------------------------------------------------------------------------TTTTTCTTCAAA------ATATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------TTT--T-----ATTCTTCC-------------GTGCAGACAAACAGATGTGGATCATAATCTTATGTTATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......GTGGCAGCTTTGGGCGGTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20400000040000
TGTGGGCGTGGCAGCTTTGGGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
................................CGTTAGAGTGGGCGTGGCAAAAAGTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100100000000
droEug1
ATAAGGTT----------------------------------------------------------------------------------------------------------GTTG------------------------------------------AT--------------AACATATCAAAATATCAAT------------------------------------------------------------------------------------AT--------------------------------------------------------------------------ATCGAT-AT--------------------------------------------------------------------------------------------------TTTTTCTAAAAAT--------------------GATAT-------------------------------------------------------------------------------------------ACTTATATAT--ATTATTTTGGC-C----------------------AAATATCGAAATC--ATATTTTTTTTTA----------TA-------------------TTTTTTTGAT-----ATTTTTTCCTTG---------------------------------------------GTSizeHit CountTotal NormTotal
No Reads
droBia1
TTTGGGG------------------------GCATTAAAGTGGGCGTGGCAAACAATTTTTAG-----------------------------------------------GTCAATCAAAAGGTT-----------TTAGTGAGACA---------------------------------------------------------------------------------------------------------------A------------------ATACATTTTTGCT-----------------------------------------------TAAAACAATTTCT------------------------------AGAATGACAGTTTTTGGCAGTTTGTGAGCGTAAGAATGGGAGTGGCACACTTTTCTGAAATAAATTGATTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-----GTTTTTCTGTCATAAAAACTGTAGGCGCT-ACAGACTGCGGATTGTGGTC---------SizeHit CountTotal NormTotal
No Reads
droTak1
AATTTTCA----------------------------------------------------------------------------------------------------------CTTT------------------------------------------AAAAAAATTTAAAAAATGCGT--------------------------------------------------------------------------------------------------ATAAAAATGTATCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATAAATAAGTAATACATGC-------------------------------------ATA-----------------------TATTA--TAATTTTAT-----------------------------ACCTTTATACATCGATT-TTTTA--------TT-------------------TACATTTTAT-----ATTAGACAATTATAGCAAATTAAGCAATTTC----------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CTTACGGA----------AAGTAGTTTTTAAGTTT--TTTTCCCC-----------------------------------------------------------------------TT------------------------------------------AAAAG------------------------------------------------ATAAAAAAATAGTTGGTTCTTTTCCAA-TTCAGAAT------TCGG----G-------------TTTTAAATTTTAA------------------------------------------------------------AAAATATCTTCTGT-----------------------------------------------------------------------------------------ATTATTAAGCTGCCATAGAAAC--------------------GATTGAAA-----------------------------AATTCGAATATTCGACAAAGCTT---------------------------------------------------------CAAT-----------------------------GCCTTTAAACATTTATT-ATATATATATATATT-------------------TATATTATAT-----ATTTTTGAATTGCTCAAG---------------------------------------ATSizeHit CountTotal NormTotal
No Reads
droRho1
GGTTT----------------------TTGGGCGTTAGAGTGGGCGTGGCAAACTTTTATTAG-----------------------------------------------GCCAATCGATATTTA-----------TTGACGAAACA---------------------------------------------AATACAT-------------------------------------AT------------------CAA------------------TTAAAATTTTCA--------------------------------------------------------------TAATATCA----------TCAAAAC-----------------------------------------------------------------------------TGTGGCCACCATTTTGAAACAA--------------------ACTTGCGC-----------------------------TGCGTAGAAACTC---CTAAAATC-----------------------------------------------------------------------------------------TA-CATGCAAAATGCCAATCC----------TC-------------------TAGCTTTTAT-----AGTTTCC----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AGAATTAA------------------------TTTTAAAAAGAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGCTATT-----------------------------------------------------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA----------CA-------------------ATTTTTATTT-----TGGTTTCAGTTGGTTAAAATGGAACAACTGCCCGAACGTGGATCGTGGTCCTCCAAAATSizeHit CountTotal NormTotal
No Reads
droKik1
TAATAAAA----------------------------------------------------------------------------------------------------------CCAT------------------------------------------TGAAAATTATCA-------------------------------------------------ACAATTCGTTTTCTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTTAATAAT--------------------GAATGCAC-----------------------------CAAATTTATATTCAAATTGAAATTGATTAAGTCATCATTTTCGG-CTT-G-----------------------------------------------------------------AGCC--ATAAAATTATTAA----------TATAAATTCAAT---------AATTTTTGAG-----GGAATTCAATTAA------------TTCCATCAAATCACAGCGCATAAAATGCCAAA--SizeHit CountTotal NormTotal
No Reads
droAna3
ATATAAAC----------AGATATTATTCAGATT------------GAACAGAAATAT-TTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACATTTC-----------------------------------------------------------------------------------------------------AGGTATAAAACAT--------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAAGTA-----------------------------------------------------------------------------------------AATTTTATTTATTTTTATATT----------TT-------------------ATAATTTTAT-----AA-TTTCAGCTTATTAAACTTCAGCCCCTTCCTGAACGTGGATCATGGTCTTCAAAGCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TACCAAAA----------------------------------------------------------------------------------------------------------CATT--------------------------------------------------------------------------TATACATTTATTCCCTCTAGCATTTATGGATACATTGTTCTTTACTTAATATCGCATATGTATTCGT----AATGATGGTATTTACAAAAAGCT-------GACA-----------------------------------------------------ATAATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-------------------TAAAACTGTT-----ATTTTTCAGCTCATTAAAATTCAGTCCCTGCCTGAACGTGGATCGTGGTCATCAAAGTTSizeHit CountTotal NormTotal
No Reads
dp5
TAAAAAAA----------------------------------------------------------------------------------------------------------AA----------------------AACATACAT---------------------------------------------------------------------------------------------------------------A------------------ATAAAATCGGGAA------------------------------------------------------------AAAACATTAAA-AA-----------------------------------------------------------------------------------------ATTTT------------------------------------------------------------------------------------------------------------------------------------------------------GATTTTAAGCCGTGTTATTTCAAAACCGTGTAAAAACAAAATA----AGGTGTATATT----------TA-------------------CATATTTTAC-----GTTTTTC----------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------------------------------------------------------------------------GATTTTAAGCCGTGTTATTTCAAAACC........................................................................................................................................2811.0010100000000
droPer2
GTGCCAAA---------------------------------------------ATATAGTTTG--------------------------------------------------CATTTGTACAAAGTGCTACGACGTTTGGAAGCTT---------AACAAT--------------TACGT--------------------------------------------------------------------------------------------------GTCAAAGTTTAACTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------GTTCAGGTGCATATTTTCGT-GCTAAAAACAAAATATTGTTATAT--T---------------------------------------------T--TATATTTTATTTTT----------TA-------------------TTTATTTTAT-----ATTTTTGGATTAATAAA------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CGTGCAGG-----------AAAAGTTTGTA----------TTTGCAAAGCAAAA-------------------------------------------------------------------GATA-----------TAATC--------------------GAAAATTAAA----------------------------------------------------------------------------AT------ACAACTTTG-------------TTTTATAATCTGT------------------------------------------------------------AAAATATATTTTAC-------------------------------------------------------------------------------------------------------------ATACTTGCTCTAACTATAAAACTATAA-AAAACACGCACCTTTTTATGCATATGT-ATATA--TTT-----------------------------------ATA-----------------------TAT------------------------------------------AAATATATATATATATATATA----------CGTTA-------TTATATATATATATTTTAT-----AATATTC----------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ATATAAAA----------------------------------------------------------------------------------------------------------ACTT------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTGAAAACATATTTTATTTTCTAATATATCCTAT------------------------------CGAAACCCAGCACCAAGTAT--------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAAATT-----------------------------------------------------------------------------------------AATACATTTCATTTTTATGTG----------T----------------------TATTAAAT-----TAATTGCAGCTAACTAAAATCA---TCCTGCCAGAGCGTGGAAGTTGGAGTTCTAAATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA---TCCTGCCAGAGCGTGGAAGTTGG...........2611.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AAAATGTT----------TGACGTTTTGAGGACA------------TGACAGAAGCAG-TATACATATATGAAGAAAATTTAATACAAATATCATAAAATAAACAGTTTAATGAG--TATAAATA-----------TTCACAGATTCAATGGGAACATTCATAAAAGTCTATGAAATGCTT--------------------------------------------------------------------------------------------------AAAGAAA--AATCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGAAATAAAATACAAATAT-------------------------------------AGG-----------------------AAGTG--TAAGAGTAC-----------------------------GAATCTGTATATTTATTTGTA----------TA-------------------TAAATTTACT-----GCATTTCATTTAG----------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AATGCCGA----------------------------------------------------------------------------------------------------------CA-----------------------------GA---------------------------------------------AATACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------TAAG-AT-----------------------------------------------------------------------------------------TAAGTTTACTT-------------------------------------------------------------------------------------------------------------------------------GTTATTATGT--A-----------------------------------------TTGTTTTTATATTTTTATTTA----------TA-------------------TACATTTTATTTAATACTTTTGGGTTACTGAGA-----------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:29 PM