dsi_6888

three_prime_UTR [2l_5742949_5743371_+]; CDS [2l_5742915_5742948_+]; exon [2l_5742915_5743371_+]; intron [2l_5742391_5742914_+]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TATCATTGGGAATGTTTTACATTCCCCAAAGAAATCATTCATAATCCCGATTCACATGCATCAGTGTCATTCGTTTTCAGAGTTATATTCAGCCATTTATTTCGTTACATCCCGTAGTCACTGCTAATCCATCGAAATAATATTATTTTCCATCCATTACAAATTAGTTTCCTTCTCTTCTTTTTATATTATTTTTATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAACTGTGTTACACCCAA ***************************************************************************************************(((.........((((...))))........)))................................*********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M024 male body	SRR553485 Chicharo_3 day-old ovaries	O002 Head	M025 embryo	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
..................................................................TCATTGGTTTTCAGA.........................................................................................................................................................................	15	1	20	1.45	29	0	0	21	0	0	4	1	3
.....................................................................................................................................................CCATCCATTACAAATTAG...................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................GATACGTCCATCATGCCGTCGCCAAAACT....................	29	0	1	1.00	1	1	0	0	0	0	0	0	0
..........................................................................................................................................AATATTATTTTCCATCCAT.............................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GTCGCCAAAACTTTAAAC..............	18	0	1	1.00	1	0	0	1	0	0	0	0	0
.............GTTTTACATTCCCCAAAGAA.........................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0
.....................................................................................................TCGTTACATCCCGTAGTCACTGCTAAT..........................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................TAGGGATACGTCCATCATGCC................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................GTCGCCAAAACTTTAAACT.............	19	0	1	1.00	1	0	1	0	0	0	0	0	0
.....................................................................................TATTCAGCCAATAAGTTCGT.................................................................................................................................................	20	3	8	0.75	6	0	3	0	0	3	0	0	0
.....................................................................................TATTCAGCCAATAAGTTCGTT................................................................................................................................................	21	3	4	0.25	1	0	1	0	0	0	0	0	0
.......................................................................CGTTTTCAGAGTTAAA...................................................................................................................................................................	16	1	6	0.17	1	0	0	0	0	0	1	0	0
................................................................TTTCATTGGTTTTCAGAG........................................................................................................................................................................	18	2	20	0.15	3	0	1	0	0	0	0	2	0
..................................................................................................................................................................................................TTGTAGCGATACGTGCATC.....................................	19	3	12	0.08	1	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................ATATTATTTATAGAGGGA...............................................	18	2	20	0.05	1	0	0	1	0	0	0	0	0

ATAGTAACCCTTACAAAATGTAAGGGGTTTCTTTAGTAAGTATTAGGGCTAAGTGTACGTAGTCACAGTAAGCAAAAGTCTCAATATAAGTCGGTAAATAAAGCAATGTAGGGCATCAGTGACGATTAGGTAGCTTTATTATAATAAAAGGTAGGTAATGTTTAATCAAAGGAAGAGAAGAAAAATATAATAAAAATATCCCTATGCAGGTAGTACGGCAGCGGTTTTGAAATTTGACACAATGTGGGTT *********************************************************************************(((.........((((...))))........)))................................***************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	M024 male body	O002 Head	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
......................................AGTATTAGGGCTAGGTGTAC................................................................................................................................................................................................	20	1	1	2.00	2	2	0	0	0	0
....................................................................................................................CAGTGACGATTAGGTAGCT...................................................................................................................	19	0	1	1.00	1	0	1	0	0	0
..........................................................................................................TGTAGGGCATCAGTGACGAT............................................................................................................................	20	0	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................TCTCTATGCAGGTAG.....................................	15	1	4	0.75	3	0	0	0	3	0
...........................................................................................................................................AATAATAAGAGGTAGGTA.............................................................................................	18	2	5	0.20	1	0	1	0	0	0
.....................................................................................................................................................................................................GTCTCTATGCAGGTAG.....................................	16	2	20	0.10	2	0	0	0	2	0
.........................................................................................................................................................................................................CTATGGAGGTCGTACGG................................	17	2	16	0.06	1	0	0	0	0	1
..............................................................................TGTCAATATAAGTTGGT...........................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	1
......................................................GTACGTGGTGACAGTAAGA.................................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0
.................................................................................................ATAAAGCATGGTAGGGAAT......................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:5742715-5742964 +	dsi_6888	TATCAT-TGGGAATGTTT-T------------ACATT----------------------CCCCAAAGAA---ATC--ATT--------------------------C----ATAATC-CCG--------------------------ATTCACATGCATCAGTGTCATTCGTT-----------------TTC-AGAGTTATATTCA-----------------------------------------------------------------GC-CATTTATTTC------------------------------------------------------GTTACATCC-------------------CGTAGTCACT-GCTAATC--CATCGAA---ATAA--T---ATTATTTTCCATCCATTAC----AAATTAGTT-TCCTTCTCTTCTTT-T---TATATTAT--TT--TTATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CCAA-----------------
droSec2	scaffold_5:4018314-4018563 +		TATCAT-TGGGAATGTTT-T------------ACATT----------------------CCCCAAAGAA---ATC--ATT--------------------------C----ATAACC-CCG--------------------------ATCCACATGCATCAGTGTCATTCGTT-----------------TTC-AGAGTTATATTCA-----------------------------------------------------------------GC-CATTTATTTC------------------------------------------------------GTTACATCC-------------------CGTAGTCACT-GCTAATC--CATCGAA---ATAA--T---ATTATTTTCCATCCATTAC----AAATTAGTT-TCCTTCTCTTCTTT-T---TATATTAT--TT--TTATAGGGATACTTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CCAA-----------------
dm3	chr2L:5947657-5947906 +		TATTAT-TGGGAATGTTT-A------------ACATT----------------------CCCCAAAGAA---ATC--ATT--------------------------C----ATAATC-CCG--------------------------ATTCACATGCATCAGCGTCATTCGTT-----------------TTC-AGAGTTATATTCA-----------------------------------------------------------------GC-CATTTATTTC------------------------------------------------------GTTACATCC-------------------CGTAGTCACT-ACTAATC--CATCGAA---ATAA--T---ATTATTTTCCATCCATTAC----AAATTAGTT-TCCTTCTCTTCTTT-T---TATATTAT--TT--TTATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CCAA-----------------
droEre2	scaffold_4929:6033065-6033315 +		TACCAC-CAGGAATGTTT-T------------ACATT----------------------CCCCATAGAA---ATC--ATT--------------------------C----ATAATC-CCG--------------------------ATATACATGCATCAGTTTCATTCGTT-----------------TTC-AGACTTATATTCA-----------------------------------------------------------------GC-CATTTATTTC------------------------------------------------------GTTACATCC-------------------CGTAGTCACT-ACTAATC--CATCGAT---ATAA--T---ATTATTTTCCATCCATTAC----AAATTAGTT-TCCTTCTCTTCTTT-T---TATATTAT--TT-TTTATAGGGAAACCTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CTAA-----------------
droYak3	2L:13248506-13248763 -		TATCAC-TAGGAATGTTT-T------------ACATT----------------------CCCCAAAGAA---ATC--ATT------T----------AATCATAATC------AATC-CCA--------------------------ATATACATGCATCAGTTTCATTCGTT-----------------TTC-AGAGTTATATTCA-----------------------------------------------------------------GC-CATTTATTTC------------------------------------------------------GTTACATCC-------------------CGTAGTCACT-GCTAATC--CATCGAA---ATAA--T---ATTATTTTCCATTCATTAC----AAATTAGTT-TCCTTCTCTTCTTT-T---TATATTAT--TT--TTATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CTAA-----------------
droEug1	scf7180000409004:19364-19569 -		TATCAT--------------------------AAATT----------------------CTTAAACAAT---ATC--GTT--------------------------C----ATATTC-CCG---------------------------TTCAT-------------------T----------------------------TTATCA-----------------------------------------------------------------GC-CATTTATTTC------------------------------------------------------GTCACATCC-------------------CATTATCATT-GCTAGAA--CATA--A---AAAC--C---GTTAATTTCCAT-CATTAC----AAATTAGTT-TTCTTCTCTTCTTT-T---TATATTAT--TT-TTCATAGGGATACTTCCATCATGCCGACGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CTAA-----------------
droBia1	scf7180000301629:28109-28287 +		TTACAT-A------------------------------------------------------AAAAAAA---ATC--ATT--------------------------C----ACAATT-TCG--------------------------ATTCACATCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACT-------------------CTTAGTCATT-GCTAATT--CATA--A---AAGC--T---AATATTTTTCGTTCATTAA----AAATAAGTT-ATCTT---TTCTTT-T---TATGTTAC--TT--TCATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAT-CCAA-----------------
droTak1	scf7180000413260:7748-7973 +		TATCCT-CAGAAAT-----------------------------------------------------TT---ATC--ATT--------------------------T----ATATTC-CCG--------------------------ATTCAC----ATCAATGTTATTCGTT-----------------TTC-AATGTAATATTAA-----------------------------------------------------------------CC-CATTTATTTC------------------------------------------------------G-CACATCC-------------------CATTGTCA-T-GCTAATA--CATA--A---GAAC--T---GTTATTTTTCCTTCATTAC----AAATTAGTT-TTCTTCTCTTCTTT-T---TATATTAT--TTTTTCATAGGGACACGTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------ATGTATCACAC-ACAA-----------------
droEle1	scf7180000491120:18570-18810 -		GATCTT-T-------TTT-G------------ATATT----------------------CTTAAAATAA---ATC--ATT-----------------AATCA--CTC-------ATT-CCG--------------------------AATCAC----ATCTGTGCCATTCGCT-----------------TTC-GATGTATTATTCA-----------------------------------------------------------------GC-CATTTATGTC------------------------------------------------------ATTACCTCC-------------------CGTAGTCATT-GCCAATG--CCTA--A---AAAC-------TTATTTTTCTTCCATTAC----AAATTAGTT-TTCTTCTCTTCTTTTT---TATATTAT--TT-TTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAG-------------------------------------CTGTGTTACAC-CTAA-----------------
droRho1	scf7180000777871:1855-2080 -		AATTC---------------------------GCATT----------------------CTATAAATAA---ATC--ACT--------------------------C----A---TT-CCA--------------------------ATTCTC----ATCAGTGTCATTCATT-----------------TTC-GATGTATTATTCA-----------------------------------------------------------------GC-CATTCATTAC------------------------------------------------------GTTTCCTCC-------------------CGTAGTCATT-CCCAATG--CTTA--A---ACAC-------TTAATTTTCTTCCATTAC----AAATTAGTT-TTC-TCTCTTCTTT-T---TTTATTAT--TT-TTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CTAA-----------------
droFic1	scf7180000453813:102237-102460 -		TGCTGT---------------------------CTTT----------------------CTCTT---AA---TTC--ATT--------------------------C----ATAATC-CCG--------------------------ATTCAT----CTCAGCCTCATTTATG-----------------TTC-AAATTATTATTCC-----------------------------------------------------------------TA-CATTTATTTT------------------------------------------------------GTTTCATCC-------------------CGTAGTCATT-GCTAATA--CTTA--A---CG-C--C---GTTGT-TTTCTTTCATTAA----AAATTAGTT-T-ATTCTCTT--TT-T---TATATTAT--TT-TTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CTTA-----------------
droKik1	scf7180000300796:53928-54165 -		ATT-AT-TG----------TA--TCTTC-TTT-CAAAATTGTGATTACCAATCCAAAATCCTCATCAAA---ATC--CAT------------------------TTC------ATAC-CCA---------------------------------------------------------------------------ATTATTATTCA-----------------------------------------------------------------GC-CAT--ATTTC------------------------------------------------------A------GC-------------------CGTAGTCATT-GCAAATTTTCA----AGTTCAAATTG---ATTATTTTTCATCCATAAC----ATATTTGTT-TTCTTCTCTTCTTTTT---TATATTATACTT-TTCATAGGGACACGTCCATCATGCCGTCGCCAAAACTCTAAA-------------------------------------CTGTGTTACAC-CCAA-----------------
droAna3	scaffold_12916:11360759-11360956 +		TGAAA----AAAGTA----TATATTTTC-T-------------------------------------GA---ATC--A-----------------------------------------------TCATATC----G---------------T----ATCAG---------------------------------------------GCCATTCACAA--------------------------------------TCCCCCATGTTATTCAGC-CATTT----CA-----------------------------------------------------------------------------------------------------------ATATTT----CATT-ATGTTTTTCATCCATAAC--ATATATTTGTT-TTCTTATTTTCTTT-C---TATATTAT--TT-CTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTCTAAA-------------------------------------CTGTGTTACAC-CCAA-----------------
droBip1	scf7180000396572:1027569-1027770 +		AAATGAAAAAAAGTA----TA--TC----TT--------------------------------TTCGAA---ATC--A-----------------------------------------------TCATATC----G---------------T----ATCGG---------------------------------------------GCCATTCACAA----------------------------------------CCCCATGTTATTCAGC-CATTT----CA-----------------------------------------------------------------------------------------------------------ATATTCTC--CATT-ATGTTCTTCATCCATGAC--ATGTATTTGTT-TTCTTATTTTCTTT-C---TATATTAT--TT-TTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTCTAAA-------------------------------------CTGTGTTACAC-CCAA-----------------
dp5	4_group1:345181-345463 -		TCAAAA-ATGAAGTGTTTGTACATTTTC-TTT---------------------------C--TATCGAA---AAC--AT----------------------------------ATCC-CCCACCATCATATCAGAAGTATCAGTCATAATCAT----ATCAATGTCCTTTGATTAATATCCATACA--------------------------------------------------------------------------------------------------C------------------------------------------------------GT----TTC-------------------TGTAGACATTTACTAATA--CAACCAA---CAAC--AATTATTG-TTTTCATTCATAAA--ACG-ATTTGTTTTTCTTCTCTTCTTTTTCTATATATTAT--TTTCTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTCTAAAAATCAA--------------------AACCAAAACCACTGTGTTACAC-CCCA-----------------
droPer2	scaffold_1:340638-340913 -		TGA--------AGTGTTTGTACATTTTT-TTT---------------------------C--TATCGAA---AAC--AT----------------------------------ATCC-CCCACCATCATATCAGAAATATCAGTCATACTCAT----ATCAATGTCCTTTGTTTAATATCCATACA--------------------------------------------------------------------------------------------------C------------------------------------------------------GT----TTC-------------------TGTAGACATTTACTAATA--CAACCAA---CAAC--AATTATTG-TTTTCATTCATAAA--ACG-ATTTGTTTTTCTTCTCTTCTTTTTCTATATATTAT--TTTCTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTCTAAAAATCAA--------------------AACCAAAACCACTGTGTTACAC-CCCA-----------------
droWil2	scf2_1100000004521:8044706-8045037 -		TATAAT-T-------TC------------TT-TCAGT----------------------ATCAACATAA---ATTTCATGTAAATCAAATCATAAATCATCA--CTT----A----------------TATA----G---------------T----GTATG---------------------------------------------CATATTCAT-----------------------------------------TTACTTTATTATTCAGCTCATTT----TAAATATATATAATCTTAACCCAAATCCTCCCAAATACATACATCCATACATCTTTTAACAAAT-------------------TGCATATATT-G------------------------T---TTTATGTTTCATCCAAT-CA-A-ATATTTGTTATTTTTTTCTTCTTTTTTCTTATATGAT--TT-CTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTCTAAAAAACAAGAAACAGACAGAATAAATAAAAAAAAAAAACCTGTGTTACAC-CAAA-----------------
droVir3	scaffold_12963:3218119-3218395 +	dvi_10276	AGTTTT-TAATAATATAT--ATATTTTTCT--------------------------------TTTAGAAATTATC--GCT--------------------------CATTCCCAATTCC--------------------------------CCCTTCATAATAG---------------CTC-ATACATATTA-AACCCTACATCTA----------------------ATCCCAATCCAACTAATAGA------------------------------------------------------------------------------------------------TCCTGCATATCATGTACATTTCTAAAAACAA--GCAAAAA--CAATCAA---CGAC--T---TTTATGTTTCATCAACAAA--AC-AATTTGTT-TTCTTCTCTTCTTTTT---TATATGAT--TT-CTCATAGGGATACGTTCATCATGCCGTCGCCAAAACTCTAAA-------------------------------------CTGTGTTAAAC-CAAA-----------------
droMoj3	scaffold_6500:13585043-13585280 +		TATTTT-T------C--------------T------T----------------------CTACAA--TT---CTC--ATT--------------------------C----AT--TC-CCA--------------------------ATTCCCATGCAT-AGT--------------AGCTAGACACATATCCTAATCCCACATTAAACCTTTTCCAA--------------------------------------T-----------------------------------------------------------------------------------CCCCATTT-------------------CGTATGCATT-TTTA-----CA----ATATCAAC--T---TTTATGTTTCATCAACAACAAACAAATTTGTT-TTCTTCTCTTCTTTTT---TATATGAT--TT-CTCATAGGGACTCGTTCATCATGCCGTCGCCAAAACTCTAAA-------------------------------------CTGTGTTAAACACCAA-----------------
droGri2	scaffold_15252:2810870-2811155 +		TATTCA-AAATAGTATTT-CATATTTTTCTTAATATA----------------------CT-----------GTA--AAT--------------------------CATTTCAAATT-CCA--------------------------ATTCAT----ATCAATG-CATTC------------------------AAAAACAC--------------AACCCTCCATATAACCTCAATCCACTTACTAAACCTCCAAC-----------------------------------------------------------------------------------ATCCTTTT-------------------CATGTACATT-TCTAAAA--CAAA--A--CCAAC--T---TTTATGTTTCATCAA-CAA----AAATTTGTT-TTCTTCTCTTCTTTTT---TATATGAT--TT-CTCATAGGGATACGACCATCATGCCGTCGCCAAAACTCTA-A-------------------------------------CTGTGTTACAC-CAAATATGTAAAAACAATCAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TATCAT-TGGGAATGTTT-T------------ACATT----------------------CCCCAAAGAA---ATC--ATT--------------------------C----ATAATC-CCG--------------------------ATTCACATGCATCAGTGTCATTCGTT-----------------TTC-AGAGTTATATTCA-----------------------------------------------------------------GC-CATTTATTTC------------------------------------------------------GTTACATCC-------------------CGTAGTCACT-GCTAATC--CATCGAA---ATAA--T---ATTATTTTCCATCCATTAC----AAATTAGTT-TCCTTCTCTTCTTT-T---TATATTAT--TT--TTATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CCAA-----------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................CCATCCATTAC----AAATTAG...................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACGTCCATCATGCCGTCGCCAAAACT...........................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AA--T---ATTATTTTCCATCCAT.................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCAAAACTTTAAA-------------------------------------C................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............GTTT-T------------ACATT----------------------CCCCAAAGAA---................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TC------------------------------------------------------GTTACATCC-------------------CGTAGTCACT-GCTAAT........................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGGATACGTCCATCATGCC.......................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCAAAACTTTAAA-------------------------------------CT...............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TATCAT-TGGGAATGTTT-T------------ACATT----------------------CCCCAAAGAA---ATC--ATT--------------------------C----ATAACC-CCG--------------------------ATCCACATGCATCAGTGTCATTCGTT-----------------TTC-AGAGTTATATTCA-----------------------------------------------------------------GC-CATTTATTTC------------------------------------------------------GTTACATCC-------------------CGTAGTCACT-GCTAATC--CATCGAA---ATAA--T---ATTATTTTCCATCCATTAC----AAATTAGTT-TCCTTCTCTTCTTT-T---TATATTAT--TT--TTATAGGGATACTTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CCAA-----------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

TATTAT-TGGGAATGTTT-A------------ACATT----------------------CCCCAAAGAA---ATC--ATT--------------------------C----ATAATC-CCG--------------------------ATTCACATGCATCAGCGTCATTCGTT-----------------TTC-AGAGTTATATTCA-----------------------------------------------------------------GC-CATTTATTTC------------------------------------------------------GTTACATCC-------------------CGTAGTCACT-ACTAATC--CATCGAA---ATAA--T---ATTATTTTCCATCCATTAC----AAATTAGTT-TCCTTCTCTTCTTT-T---TATATTAT--TT--TTATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CCAA-----------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTCCATCATGCCGTCGCC.................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACGTCCATCATGCCGT.....................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGTCCATCATGCCGTCGCCA................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAAA-------------------------------------CTGTGTTACAC-CC...................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGCCGTCGCCAAAAC............................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TTCACATGCATCAGCGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACGTCCATCATGCCGTCGCC.................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................ATT----------------------CCCCAAAGAA---ATC--ATT--------------------------C----A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTCGCCAAAACTTTAA.......................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................C----AAATTAGTT-TCCTTCTCTTCTTT-T---TATA.........................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAAACTTTAAA-------------------------------------CTGTGT...........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................G--------------------------ATTCACATGCATCAGCGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGT...........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TACCAC-CAGGAATGTTT-T------------ACATT----------------------CCCCATAGAA---ATC--ATT--------------------------C----ATAATC-CCG--------------------------ATATACATGCATCAGTTTCATTCGTT-----------------TTC-AGACTTATATTCA-----------------------------------------------------------------GC-CATTTATTTC------------------------------------------------------GTTACATCC-------------------CGTAGTCACT-ACTAATC--CATCGAT---ATAA--T---ATTATTTTCCATCCATTAC----AAATTAGTT-TCCTTCTCTTCTTT-T---TATATTAT--TT-TTTATAGGGAAACCTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CTAA-----------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................................................................................................ATTTATTTC------------------------------------------------------GTTACATCC-------------------CGT......................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACCTCCATCATGCCGTCGCCA................................................................................	24	1	2.00	2	1	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAAACTTTAAA-------------------------------------CTGTGTT..........................	22	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACCTCCATCATGCCGTCGCC.................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCTCCATCATGCCGTCGCCA................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAAACTTTAAA-------------------------------------CTGTGTTAC........................	24	1	1.00	1	0	0	1	0	0	0	0

droYak3

TATCAC-TAGGAATGTTT-T------------ACATT----------------------CCCCAAAGAA---ATC--ATT------T----------AATCATAATC------AATC-CCA--------------------------ATATACATGCATCAGTTTCATTCGTT-----------------TTC-AGAGTTATATTCA-----------------------------------------------------------------GC-CATTTATTTC------------------------------------------------------GTTACATCC-------------------CGTAGTCACT-GCTAATC--CATCGAA---ATAA--T---ATTATTTTCCATTCATTAC----AAATTAGTT-TCCTTCTCTTCTTT-T---TATATTAT--TT--TTATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CTAA-----------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAACTTTAAA-------------------------------------CTGTGT...........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAACTTTAAA-------------------------------------CTGTGTT..........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAA-------------------------------------CTGTGTTACAC-CTAA-----------------	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-C....................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TATCAT--------------------------AAATT----------------------CTTAAACAAT---ATC--GTT--------------------------C----ATATTC-CCG---------------------------TTCAT-------------------T----------------------------TTATCA-----------------------------------------------------------------GC-CATTTATTTC------------------------------------------------------GTCACATCC-------------------CATTATCATT-GCTAGAA--CATA--A---AAAC--C---GTTAATTTCCAT-CATTAC----AAATTAGTT-TTCTTCTCTTCTTT-T---TATATTAT--TT-TTCATAGGGATACTTCCATCATGCCGACGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CTAA-----------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTACAT-A------------------------------------------------------AAAAAAA---ATC--ATT--------------------------C----ACAATT-TCG--------------------------ATTCACATCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACT-------------------CTTAGTCATT-GCTAATT--CATA--A---AAGC--T---AATATTTTTCGTTCATTAA----AAATAAGTT-ATCTT---TTCTTT-T---TATGTTAC--TT--TCATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAT-CCAA-----------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TATCCT-CAGAAAT-----------------------------------------------------TT---ATC--ATT--------------------------T----ATATTC-CCG--------------------------ATTCAC----ATCAATGTTATTCGTT-----------------TTC-AATGTAATATTAA-----------------------------------------------------------------CC-CATTTATTTC------------------------------------------------------G-CACATCC-------------------CATTGTCA-T-GCTAATA--CATA--A---GAAC--T---GTTATTTTTCCTTCATTAC----AAATTAGTT-TTCTTCTCTTCTTT-T---TATATTAT--TTTTTCATAGGGACACGTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------ATGTATCACAC-ACAA-----------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GATCTT-T-------TTT-G------------ATATT----------------------CTTAAAATAA---ATC--ATT-----------------AATCA--CTC-------ATT-CCG--------------------------AATCAC----ATCTGTGCCATTCGCT-----------------TTC-GATGTATTATTCA-----------------------------------------------------------------GC-CATTTATGTC------------------------------------------------------ATTACCTCC-------------------CGTAGTCATT-GCCAATG--CCTA--A---AAAC-------TTATTTTTCTTCCATTAC----AAATTAGTT-TTCTTCTCTTCTTTTT---TATATTAT--TT-TTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAG-------------------------------------CTGTGTTACAC-CTAA-----------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AATTC---------------------------GCATT----------------------CTATAAATAA---ATC--ACT--------------------------C----A---TT-CCA--------------------------ATTCTC----ATCAGTGTCATTCATT-----------------TTC-GATGTATTATTCA-----------------------------------------------------------------GC-CATTCATTAC------------------------------------------------------GTTTCCTCC-------------------CGTAGTCATT-CCCAATG--CTTA--A---ACAC-------TTAATTTTCTTCCATTAC----AAATTAGTT-TTC-TCTCTTCTTT-T---TTTATTAT--TT-TTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CTAA-----------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGCTGT---------------------------CTTT----------------------CTCTT---AA---TTC--ATT--------------------------C----ATAATC-CCG--------------------------ATTCAT----CTCAGCCTCATTTATG-----------------TTC-AAATTATTATTCC-----------------------------------------------------------------TA-CATTTATTTT------------------------------------------------------GTTTCATCC-------------------CGTAGTCATT-GCTAATA--CTTA--A---CG-C--C---GTTGT-TTTCTTTCATTAA----AAATTAGTT-T-ATTCTCTT--TT-T---TATATTAT--TT-TTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTTTAAA-------------------------------------CTGTGTTACAC-CTTA-----------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATT-AT-TG----------TA--TCTTC-TTT-CAAAATTGTGATTACCAATCCAAAATCCTCATCAAA---ATC--CAT------------------------TTC------ATAC-CCA---------------------------------------------------------------------------ATTATTATTCA-----------------------------------------------------------------GC-CAT--ATTTC------------------------------------------------------A------GC-------------------CGTAGTCATT-GCAAATTTTCA----AGTTCAAATTG---ATTATTTTTCATCCATAAC----ATATTTGTT-TTCTTCTCTTCTTTTT---TATATTATACTT-TTCATAGGGACACGTCCATCATGCCGTCGCCAAAACTCTAAA-------------------------------------CTGTGTTACAC-CCAA-----------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGAAA----AAAGTA----TATATTTTC-T-------------------------------------GA---ATC--A-----------------------------------------------TCATATC----G---------------T----ATCAG---------------------------------------------GCCATTCACAA--------------------------------------TCCCCCATGTTATTCAGC-CATTT----CA-----------------------------------------------------------------------------------------------------------ATATTT----CATT-ATGTTTTTCATCCATAAC--ATATATTTGTT-TTCTTATTTTCTTT-C---TATATTAT--TT-CTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTCTAAA-------------------------------------CTGTGTTACAC-CCAA-----------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TT-CTCATAGGGATACGTCCAT.............................................................................................	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGTCCATCATGCCGTCGCCAAAACT...........................................................................	28	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGATACGTCCATCATGCCGTCGCC.................................................................................	26	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACGTCCATCATGCCGT.....................................................................................	19	1	1.00	1	0	1	0	0	0	0

droBip1

AAATGAAAAAAAGTA----TA--TC----TT--------------------------------TTCGAA---ATC--A-----------------------------------------------TCATATC----G---------------T----ATCGG---------------------------------------------GCCATTCACAA----------------------------------------CCCCATGTTATTCAGC-CATTT----CA-----------------------------------------------------------------------------------------------------------ATATTCTC--CATT-ATGTTCTTCATCCATGAC--ATGTATTTGTT-TTCTTATTTTCTTT-C---TATATTAT--TT-TTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTCTAAA-------------------------------------CTGTGTTACAC-CCAA-----------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

TCAAAA-ATGAAGTGTTTGTACATTTTC-TTT---------------------------C--TATCGAA---AAC--AT----------------------------------ATCC-CCCACCATCATATCAGAAGTATCAGTCATAATCAT----ATCAATGTCCTTTGATTAATATCCATACA--------------------------------------------------------------------------------------------------C------------------------------------------------------GT----TTC-------------------TGTAGACATTTACTAATA--CAACCAA---CAAC--AATTATTG-TTTTCATTCATAAA--ACG-ATTTGTTTTTCTTCTCTTCTTTTTCTATATATTAT--TTTCTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTCTAAAAATCAA--------------------AACCAAAACCACTGTGTTACAC-CCCA-----------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................AGACATTTACTAATA--CAACC................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................AATA--CAACCAA---CAAC--AATTATTG-T...........................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTCATAAA--ACG-ATTTGTT.................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................AAC--AT----------------------------------ATCC-CCCACCATCATATCAGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

TGA--------AGTGTTTGTACATTTTT-TTT---------------------------C--TATCGAA---AAC--AT----------------------------------ATCC-CCCACCATCATATCAGAAATATCAGTCATACTCAT----ATCAATGTCCTTTGTTTAATATCCATACA--------------------------------------------------------------------------------------------------C------------------------------------------------------GT----TTC-------------------TGTAGACATTTACTAATA--CAACCAA---CAAC--AATTATTG-TTTTCATTCATAAA--ACG-ATTTGTTTTTCTTCTCTTCTTTTTCTATATATTAT--TTTCTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTCTAAAAATCAA--------------------AACCAAAACCACTGTGTTACAC-CCCA-----------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCAAAACTCTAAAAAT...................................................................	20	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATGCCGTCGCCAAAACTCTAAAA.....................................................................	27	1	1.00	1	1	0	0	0	0	0

droWil2

TATAAT-T-------TC------------TT-TCAGT----------------------ATCAACATAA---ATTTCATGTAAATCAAATCATAAATCATCA--CTT----A----------------TATA----G---------------T----GTATG---------------------------------------------CATATTCAT-----------------------------------------TTACTTTATTATTCAGCTCATTT----TAAATATATATAATCTTAACCCAAATCCTCCCAAATACATACATCCATACATCTTTTAACAAAT-------------------TGCATATATT-G------------------------T---TTTATGTTTCATCCAAT-CA-A-ATATTTGTTATTTTTTTCTTCTTTTTTCTTATATGAT--TT-CTCATAGGGATACGTCCATCATGCCGTCGCCAAAACTCTAAAAAACAAGAAACAGACAGAATAAATAAAAAAAAAAAACCTGTGTTACAC-CAAA-----------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................................................TCTTAACCCAAATCCTCCCA...........................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGCCAAAACTCTAAAA.....................................................................	19	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACGTCCATCATGCCGTCGCC.................................................................................	23	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACGTCCATCATGCCGT.....................................................................................	19	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCCATCATGCCGTCGCC.................................................................................	20	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGAAACAGACAGAATAAA...............................................	22	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAAAAAAAAAAACCTGTGT...........................	22	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTCATCCAAT-CA-A-AT........................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGACAGAATAAATAAAAA.........................................	21	1	1.00	1	0	0	0	1	0

droVir3

AGTTTT-TAATAATATAT--ATATTTTTCT--------------------------------TTTAGAAATTATC--GCT--------------------------CATTCCCAATTCC--------------------------------CCCTTCATAATAG---------------CTC-ATACATATTA-AACCCTACATCTA----------------------ATCCCAATCCAACTAATAGA------------------------------------------------------------------------------------------------TCCTGCATATCATGTACATTTCTAAAAACAA--GCAAAAA--CAATCAA---CGAC--T---TTTATGTTTCATCAACAAA--AC-AATTTGTT-TTCTTCTCTTCTTTTT---TATATGAT--TT-CTCATAGGGATACGTTCATCATGCCGTCGCCAAAACTCTAAA-------------------------------------CTGTGTTAAAC-CAAA-----------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTCGCCAAAACTCT.........................................................................	18	2	1.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AATTATC--GCT--------------------------CATTCCCAATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTCC--------------------------------CCCTTCATAATAG---------------CT...................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTT-TTCTTCTCTTCTTTT.................................................................................................................................	20	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
......................................................................................................................................................................................................................................................................................................................................................................................AA--GCAAAAA--CAATCAA---CGAC--.....................................................................................................................................................................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATTA-AACCCTACATCTA----------------------ATCCCAAT...........................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................GAC--T---TTTATGTTTCATCAACAAA--AC-A........................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................ACTAATAGA------------------------------------------------------------------------------------------------TCCTGCATATCATGTACA.............................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGCCGTCGCCAAAACC...........................................................................	20	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AAAACAA--GCAAAAA--CAATCAA---C..........................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ACATTTCTAAAAACAA--GCAAAAA--C....................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAT--TT-CTCATAGGGAT.....................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACGTTCATCATGCCGTCGCCA................................................................................	24	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCAAAACTCTAAA-------------------------------------CTGTGT...........................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCGCCAAAACTCTAAA-------------------------------------.................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACGTTCATCATGCCGTCGCCAC...............................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTCATCATGCCGTCGCCAAA..............................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................A--AC-AATTTGTT-TTCTTCTCTTC.....................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACGTTCATCATGCCGTC....................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCATGCCGTCGCCAAAACTCT.........................................................................	26	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACGTTCATCATGCCGT.....................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGCCGTCGCCAAAACTCT.........................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCTAAA-------------------------------------CTGTGTTAAAC-CAAA-----------------	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TATATGAT--TT-CTCATAGGGATACGT.................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TATTTT-T------C--------------T------T----------------------CTACAA--TT---CTC--ATT--------------------------C----AT--TC-CCA--------------------------ATTCCCATGCAT-AGT--------------AGCTAGACACATATCCTAATCCCACATTAAACCTTTTCCAA--------------------------------------T-----------------------------------------------------------------------------------CCCCATTT-------------------CGTATGCATT-TTTA-----CA----ATATCAAC--T---TTTATGTTTCATCAACAACAAACAAATTTGTT-TTCTTCTCTTCTTTTT---TATATGAT--TT-CTCATAGGGACTCGTTCATCATGCCGTCGCCAAAACTCTAAA-------------------------------------CTGTGTTAAACACCAA-----------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................AAC--T---TTTATGTTTCATCAACAACAAACAA........................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGTTCATCATGCCGTCGCCAAA..............................................................................	24	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCATGCCGTCGCC.................................................................................	18	1	1.00	1	0	0	0	0	1	0

droGri2

TATTCA-AAATAGTATTT-CATATTTTTCTTAATATA----------------------CT-----------GTA--AAT--------------------------CATTTCAAATT-CCA--------------------------ATTCAT----ATCAATG-CATTC------------------------AAAAACAC--------------AACCCTCCATATAACCTCAATCCACTTACTAAACCTCCAAC-----------------------------------------------------------------------------------ATCCTTTT-------------------CATGTACATT-TCTAAAA--CAAA--A--CCAAC--T---TTTATGTTTCATCAA-CAA----AAATTTGTT-TTCTTCTCTTCTTTTT---TATATGAT--TT-CTCATAGGGATACGACCATCATGCCGTCGCCAAAACTCTA-A-------------------------------------CTGTGTTACAC-CAAATATGTAAAAACAATCAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_6888

2l:5742765-5742914 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-1.5	-1.3