ID:

dsi_6883

 Coordinate:

2r:5296596-5296859 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-23.3 -23.0 -23.0

Flybase annnotation

CDS [2r_5296429_5296595_-]; exon [2r_5296273_5296595_-]; CDS [2r_5296860_5297036_-]; exon [2r_5296860_5297036_-]; intron [2r_5296596_5296859_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGCAAGCGAAACGACAGCTCAGAAAGTGAATCATCCGACGATGACTCCGGTATATATTCAATCAGATTGGGGAGACCCGTAGTATATAGTCATTTTATTGGAATTCTTGTCACTAACTTTCAGTGGGCTTGTCTAATTATTATTACTTGTATAAGTTAGGTTCGTCTATCGGTTATCTAGTGAAAAGCATAGCAAATAACTGACGCTGAACTAGGTAGCACTGACGAAATTAACTTCTGCTAGTAATTTGAAAATAGTTTCTCAATATTATCACTGAAAAACGACCCAACTGAAGTACTCATTTCTTTTTTAGATAAAGAGCCATCTGCACGAAGAGCCCTGCTTCAAAAGGTGCCATCTGGT
**************************************************************************************...((((.((..(((..((.(((.((((((....((.((((((...(((((((..(((.....)))..)))))))...)))))).)).....)))))).))).))..)))..)).)))).....********************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M025
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................................................................................................................................................................................................CACGAAGAGCCCTGCTTCAAAAGG........... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................ATAGTCATTTTATTGGAA.................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0
.........AAACGAAAGCTCAGAAAGTGAAT............................................................................................................................................................................................................................................................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................AATAACTGACGCTGA.......................................................................................................................................................... 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0
GAACAAGCGAAACGAAAGCTCAGAA................................................................................................................................................................................................................................................................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................GTTCGTCTATCGGTTAGG.......................................................................................................................................................................................... 18 2 3 0.67 2 1 0 0 0 0 0 0 0 1
...............................................................................................................................................................CGTTCGTCTATCGGTTA............................................................................................................................................................................................ 17 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................CAGATAAAGAGCCATCTCC.................................. 19 2 2 0.50 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................TGTGAAAATGGTTTGTCAATATT.............................................................................................. 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0
.......CGGAACGACAGCTCAGCACGT................................................................................................................................................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................................GTTCGTCTATCGGTTAGGA......................................................................................................................................................................................... 19 3 16 0.31 5 0 1 0 0 0 0 4 0 0
..................................................................................................................................................................TCGTCTATCGGTTAG........................................................................................................................................................................................... 15 1 8 0.25 2 0 0 0 0 2 0 0 0 0
.................................................................................................................................................................TTCGTCTATCGGTTAGG.......................................................................................................................................................................................... 17 2 12 0.25 3 0 0 0 0 3 0 0 0 0
...................................................................................................................................................................................................CATAACTGACGCTGA.......................................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................GTTCGTCTATCGGTTAGGG......................................................................................................................................................................................... 19 3 12 0.17 2 0 0 0 0 0 0 2 0 0
...............................................................................................................................................................CCTTCGTCTATCGGTTA............................................................................................................................................................................................ 17 2 8 0.13 1 0 0 0 0 1 0 0 0 0
...........................................................................................CATTTTATTGGAATT.................................................................................................................................................................................................................................................................. 15 0 10 0.10 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................TTTCTTTTTTCGATAAA............................................. 17 1 11 0.09 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................CTAATAACTGAGGCTGA.......................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................TTACTTGTGTAGGATAGGT.......................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................TAGTAATTGCAAAATCGTTTC...................................................................................................... 21 3 18 0.06 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................TACTATCAATGAAAAACGAT.............................................................................. 20 3 19 0.05 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................TCTTGTATAACTTAGG........................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTCGTTCGCTTTGCTGTCGAGTCTTTCACTTAGTAGGCTGCTACTGAGGCCATATATAAGTTAGTCTAACCCCTCTGGGCATCATATATCAGTAAAATAACCTTAAGAACAGTGATTGAAAGTCACCCGAACAGATTAATAATAATGAACATATTCAATCCAAGCAGATAGCCAATAGATCACTTTTCGTATCGTTTATTGACTGCGACTTGATCCATCGTGACTGCTTTAATTGAAGACGATCATTAAACTTTTATCAAAGAGTTATAATAGTGACTTTTTGCTGGGTTGACTTCATGAGTAAAGAAAAAATCTATTTCTCGGTAGACGTGCTTCTCGGGACGAAGTTTTCCACGGTAGACCA
**********************************************************************************************************************************************************...((((.((..(((..((.(((.((((((....((.((((((...(((((((..(((.....)))..)))))))...)))))).)).....)))))).))).))..)))..)).)))).....************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
 M053
female body
...........................................................................................................................................................................................................................................................................................TTGGGTTCACGTCATGAGTAA............................................................ 21 3 2 0.50 1 0 1 0 0 0 0 0
.....................TCTTTCACTCAGTAGCCTG.................................................................................................................................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................GGGACGAAGTTTTGGATGG....... 19 3 12 0.08 1 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................TGGGTTGAGTTCATG................................................................. 15 1 13 0.08 1 0 0 1 0 0 0 0
.........................TCACTTAGTAGGCTACTT................................................................................................................................................................................................................................................................................................................................. 18 2 14 0.07 1 0 0 0 0 1 0 0
.........................................................................................................AGAACAGTGATTAAAATTC................................................................................................................................................................................................................................................ 19 2 15 0.07 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................GCAACGAAGTTTTGCACGG....... 19 3 18 0.06 1 0 0 0 0 0 1 0
............................................................................................................................................................................................................................................................TTTGCCAAAGAGTTAT................................................................................................ 16 2 20 0.05 1 1 0 0 0 0 0 0
..............................................................................GCATGGTCTATCAGTAAA............................................................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1
..............................................................................................................AGTGATTGAGGGTCAC.............................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................TGGTGACTGCGTTAATTGT................................................................................................................................ 19 3 20 0.05 1 0 0 0 1 0 0 0

Generated: 04/23/2015 at 12:09 PM