dsi_6858

five_prime_UTR [2r_12083469_12083674_-]; exon [2r_12083414_12083674_-]; intron [2r_12083675_12084404_-]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AAAGCAAAACAAAGTGAATGACAAACGGCGAGAATGAAATGGAAAACCACCCCCCGCACCACCCATTTACTGTTAAACATGTGTGCGCGTGTGTGCGTGGCGCTAATTGAACTCACACAATATATATAATTTATTTTTTTTGGCGCTCCACAAAAGCCACTTACTTGTGAGTCAGCTTACGACTTCCACCTGCCTTCCAGATTGCGTGCTCACAACTCCCGCGAGGACGACAACTACTGCTAACAACTAA ****************************************************************************....(((.((...((((...((((((((.................................)))))))).))))...)))))....(((((((....)))))))******************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M053 female body	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
................................................................................................................................................................TTACTTGTGAGTCAGCTTACGA....................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0
..............................................................................ATGTGTGCGCGTGTGTGCGTGGCG....................................................................................................................................................	24	0	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................................AAAGCCACTTACTTGTGAGTCAGCT.........................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................GCGAGGACGACAACTACTGCTAACAACTAA	30	0	1	1.00	1	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................TACGACGACTACTGCTAAGAAC...	22	3	2	0.50	1	0	0	0	0	1	0	0
......................AAACGTCCAGAATGAAATTGA...............................................................................................................................................................................................................	21	3	7	0.14	1	0	0	0	0	0	1	0
..........................................................................................ATGTGCGTGGCGCTA.................................................................................................................................................	15	1	9	0.11	1	1	0	0	0	0	0	0
...................................................................................TGCGCGTGTGTGCGTG.......................................................................................................................................................	16	0	14	0.07	1	1	0	0	0	0	0	0
.........................................CAAATCCACCCCCCGCA................................................................................................................................................................................................	17	2	18	0.06	1	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................TACGACGACTACTGCTAAG......	19	3	20	0.05	1	0	0	0	0	1	0	0

TTTCGTTTTGTTTCACTTACTGTTTGCCGCTCTTACTTTACCTTTTGGTGGGGGGCGTGGTGGGTAAATGACAATTTGTACACACGCGCACACACGCACCGCGATTAACTTGAGTGTGTTATATATATTAAATAAAAAAAACCGCGAGGTGTTTTCGGTGAATGAACACTCAGTCGAATGCTGAAGGTGGACGGAAGGTCTAACGCACGAGTGTTGAGGGCGCTCCTGCTGTTGATGACGATTGTTGATT ******************************************************************....(((.((...((((...((((((((.................................)))))))).))))...)))))....(((((((....)))))))****************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries
..........................................................................................................................................................................................................ACGAACGAATGTTGAGGGC.............................	19	2	1	1.00	1	1	0	0	0	0	0	0	0
................................................................................................................AGTGTGTTATATATAT..........................................................................................................................	16	0	3	0.33	1	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................AGGGCGCTCATGATGTTGAAGA............	22	3	3	0.33	1	1	0	0	0	0	0	0	0
.............................................TGGTAGGGGGCGTAGTGAGTAA.......................................................................................................................................................................................	22	3	3	0.33	1	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................ACGAGTGTTAAGGGCG............................	16	1	3	0.33	1	0	0	0	1	0	0	0	0
............................................TTGGTGGGGGGCGTGGAGGTT.........................................................................................................................................................................................	21	2	3	0.33	1	0	1	0	0	0	0	0	0
.....................................................................................................................................AAAAAAAACCTCGCGGTGTCTT...............................................................................................	22	3	5	0.20	1	0	1	0	0	0	0	0	0
......................................................................................................................................AAAAAAGCCGCAAGGTGT..................................................................................................	18	2	8	0.13	1	0	0	0	0	0	1	0	0
...................................................GGGGCATGGTGGATAAATT....................................................................................................................................................................................	19	3	9	0.11	1	0	0	0	0	0	0	1	0
............................................GCGGTGGGGGGCGTGGTGCGT.........................................................................................................................................................................................	21	3	10	0.10	1	0	0	1	0	0	0	0	0
.....................................................................GGCAATTTGTACACA......................................................................................................................................................................	15	1	12	0.08	1	0	0	0	0	0	0	0	1
......................................................................................................................................................GTGTTCGGTCAATGAAC...................................................................................	17	2	20	0.05	1	0	0	0	1	0	0	0	0
......................................................................................................GATGAACTTGAGCGTGT...................................................................................................................................	17	2	20	0.05	1	0	0	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:12083625-12083874 -	dsi_6858	AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAAACCACCCC--------------------------------------------------------C-----CGCA------------------------------------------------CCA--CCCATTTAC--TGTT-AAACATGTGTGCGCGTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTAT---------TTTTTTTGG-CG-------CT-----------CCACAAAAG---------------------CCACTTAC------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------TCAC--AACTCCCGCGAGGAC--GACAACT-------------A--CTGCT------------AACAACTAA
droSec2	scaffold_1:8909290-8909537 -		AAAGCAAAACAAAGTGAATGACAAA----CAGCGAGAATGAAATGGAAAACCACCCC--------------------------------------------------------C-----CGCA------------------------------------------------CCA--CCCATTTAC--TGTT-AGACATGTGTGCGCGTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTAT---------TTTTTTTGG-CG-------CT-----------CCACAAAAG---------------------CC--TTAC------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------TCAC--AACTCCCGCGAGGAC--GACAACT-------------A--CTGCT------------AACAACCAA
dm3	chr2R:11418851-11419100 -		AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAACGAAATGGAAAACCACCCC--------------------------------------------------------C-----CGCA------------------------------------------------CCA--CCCACTTAC--TGTT-AGACATGTGTGCGCGTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTAT---------TTTTTTTGG-CG-------CT-----------CCACAAAAG---------------------CCACTTAC------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------TCAT--AACTCCCGCGAGGAC--GACAACT-------------A--CCGCT------------AACAACTAA
droEre2	scaffold_4845:14449858-14450111 +		AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAAACCACCCC--------------------------------------------------------C-----CGCA------------------------------------------------CCA--CCCACTTAC--TGTT-AGAC----GTGCGCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTAT---------T-TTTTTGG-CG-------CT-----------CCACAATAG---------------------CCCCATAT------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACAA--AACTCCCGCGAGGAC--GACAACTA----CGACAACTA--CAGCT------------AACAACTAA
droYak3	2R:17574545-17574806 +		AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAACCCAACCC--------------------------------------------------------C-----CGCA------------------------------------------------CCA--CCCGCTTAC--TGTT-AGAC----GTGCGCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTAT---------TTTTTTTGG-CG-------CT-----------CCACAAAAG---------------------CCACATAT------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACAC--AACTCCCGCGAGGAC--GGCAACTA----CGACAACTA--CAGCTAACAAC-----TAACAACTAA
droEug1	scf7180000409672:294648-294906 -		AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAAAGCACCCCCTT---GCCCAGTTA--------------------------------CCCG-CC--C-----CA-A------------------------------------------------CCC--ACCATTTAC--TATTTAGAA----TTGCGCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTAT---------T-TTTTTGG-CG-------CT-----------CCACAAAAG--------------------GCCATATAT------------TTGTGAGTCAACT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACAC--AACTCCCGCGAGGAC--GACAACTA--------------------------------AACAACTAA
droBia1	scf7180000302292:4263887-4264146 +		AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAAGCCACCCCCTGCCGC------C----------------------GC-CCA-----CTCGCC-----------CA------------------------------------------------CCC--CCCACTTAC--TGCT-AGAA----CTGCCCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATATATGTATAA----TTTAT---------T--TTTTGG-CG-------CT-----------CCACAA-AG---------------------CC-CGTAT------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACAC--CATTCCCGCGGGGAC--GCCAACTA---------------CGA--------------CACAACTAA
droTak1	scf7180000414536:50812-51078 +		AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAAACCACCCCCAGCTCC----------------------------------CC----CCCA-CCCCC-----CCTAC--T--------------------------------------------CCA--CCCACTTAC--TGTT-AGAA----TTGCCCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT--GTATAA----TTTAT---------TTTTTTTGGTCG-------CT-----------CCACCAGAG---------------------CCACATAT------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACAC--AATTCCCGCGAGGAC--GACAACAA------------A--CCG--------------ACTAACTAA
droEle1	scf7180000491214:4298834-4299093 -		AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAATCCACCCCCCT---A-----------------------------AC-CCAC----TTCA-CCCT-----------------------------------------------------------------CTTTTAC--TGTT-AGAA----GTGCCCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTATTTTAG--TTTTTTTTTCG-CG-------CT-----------CCACAAAAG---------------------CCACATAT------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACAC--AACTCCCGCGAGGAC--GACAAA--------------A--CAACC------------AGCAACTAA
droRho1	scf7180000776849:386710-386969 +		AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAATCCACCCCCCG---T------C----------------------AC-CCA------CCA-CCCT----------------------------------------------------------------CCTTTTAC--TGTT-AGAA----GTGCGCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTATTTAAGTTGTTTTTTTTGG-CG-------CT-----------CCACAA-AG---------------------CCACATAT------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACAC--AACTCCCGCGAGGAC--AACAAATA-----------------ACC------------AGCAACTAA
droFic1	scf7180000453342:513069-513321 +		AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAATCCACCCCCCT---T------------------------------------------CGC----C-----CGTG------------------------------------------------CCC--CCCTTTTAC--TGTT-AGAA----GTGCGCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTATA------TTTTTCTTTGG-CG-------CT-----------CCACAAAAG---------------------CCACATAT------------TTGTGAGTCACCT--------TACGACT-ACT---TCCACCTGAATTCC---------------------------AGATTGCGTGC-------------ACAC--AACTCCCGCGAGGAC--AACAACT---------------------------------AACAACTAG
droKik1	scf7180000302476:461283-461580 -		AAAGCAAAACAAAGTGAATGACAAAAAGTCGACGAGAATGAAATGGAAATCCACCCTCTC---CCC--------------------------CTTGCCACCCCATCCGCCCATC-----CGCGT------------------------------------------------------GTGTTAC--TGTT-AGAC----CTGCGCCTGTGT-GTGTGTGGCGCTAATTGAA---CAAGTGTATAAGTGTACACAAATATAT----AT-A----TTCAT---------TCTTTTTGG-CG-------CT-----------CCA--------------------------------TAT------------TTGTGAGTCAGCT--------TACGACTGACTTGCTCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACACAATATTCCCGCGAGGAC--GACTAG--------------AGGCAGCCGAGCATAATAATAATAGCAGA
droAna3	scaffold_13266:7839971-7840277 -		AAAGCAAAACAAAGTGAATGACAAA----AGTGGAGAATGAAATGGAAATCCAACCAACC---A------------------------CCCACTT-CCAC----CCCA-CCACC-----CCCACGG---A------------------------------------------------CTCTCTC--TATT----T----GTGCGCCTGTGT-GTGTGTGGCGCTAATTGAAGAGCC------------CACAAAG-TT--C----TCTA----CTTACT------TTTTTTTTTGG-CG-------CT-----------TTTCATAATATAGTTGGAATATATATATGTTTCTGTGT------------TTGTGAGTCAGCC--------TACAACT-------TCCACCTGCTTTCC---------------------------AGATTGCGTGC-------------ACACCCAATTCCCGCGAGGAC--AACAGTAAAAAAAAAAAAAAA--CAGCC------------AAATAATAA
droBip1	scf7180000396759:985445-985730 +		AAAGCAAAACAAAGTGAATGACAAA----AGTGGAGAATGAAATGGAAATCCACCCAACC---A------------------------CCCCCT----------CTTA-CTCTC-----TTCCT----------------------------------------------------------AAC--GGAC-ATAA----GTGCGCCTGT---GTGCGTGGCGCTAATTGAAGAGCC------------CACAAAG-TT--C----TCTATATATCTTT---------TTTTTTTGG-CG-------CT-----------TCATATAATATAAATGGAATATATGTATG-T-TTGTGT------------TTGTGAGTCAGCC--------TACAACT-------TCCACCTGCTTTCC---------------------------AGATTGCGTGC-------------ACACACGATTCCCGCGAGGAC--AACAAA--------------A--CAGCCAAAAAT------AAT-AATAA
dp5	3:12077625-12077891 -		-------------GTGAATGACGAA----AGTCAAGAATGAAAGGGAAATATGCCTCCTC---C--CAGGAACTGGCAAAGGCAAACACACACAC-ACAG----TCCA-CCCCC-----CGCATGACGTA----------------------------------------------TATATGTAT--TGTT-GGAT----GTGGGTCTGT---CTGCGCGGCGCTAATTGAATAGCT------------CACACAA-T----------------------------------TTTGG-CGCA-----CT-----------CC-------------------------------CCCCC------------TCGCTAGTCCGCTTAGAGCCTTACAACT-------TCCACCTGCCTTAT---------------------------AGATTGCGTGC-------------GCAC--GACTCCCCCGAGGAC--AACAAA--------------A--CCAGC------------CAAAAATAT
droPer2	scaffold_44:266120-266385 -		-------------GTGAATGACGAA----AGTCAAGAATGAAAGGGAAATATGCCTCCCC---CCCCAGGCACAGGCAAAGGCAAACAC--ACAC-ACAG----TCCA-CCCCC-----CGCATGACATA----------------------------------------------TATATGTAT--TGTT-GGAT----GTGGGTCTGT---CTGCGCGGCGCTAATTGAATAGCT------------CACACAA-T----------------------------------TTTGG-CGCA-----CT-----------CCC--------------------------------CCC------------TCGCTAGTCCGCTTAGAGCCTTACAACT-------TCCACCTGCCTTAT---------------------------AGATTGCGTGC-------------GCAC--GACTCCCCCGAGGAC--AACAAA--------------A--CCATC------------AAAAAATAT
droWil2	scf2_1100000004954:2970019-2970291 +		AGAGTGTGACAGAGTGAGCGTTATA----GGGGAA------------------------------------------------------------------------------------------------CGGGAATGTAATAAAAACAATAACAAAGAATGA----A--CTG--G--ACTTTTTGTTTT-TG------------GTGTTTGCTGCGTGGCGCTAATTGAAACGCT------------CACACAA-TTTAT-----TAG----TTCAC---------TCTCTACTT-CA-------CTTTACTATTGCTTTCCGC--------GTGCGTATGTGTGAGTGTTTGTGT------------ATGTGAGTCACCT--------CTTACTC-------TGCACCTGCTTAGT------------------------AA-GGATTGCGTGCTA--------A--GCGA--AATTCCTGCGAGACC--CCCACC---------------------C------------CCCAACTAA
droVir3	scaffold_12875:20432652-20432918 -		TA-----------ATAAATAGCGCA----AGTCAAGAATGAAATGGAAATACAGCCCCCC---G----------------------------CTT-GCAC----TCCG-CC--C-----CACATGACGTA-----------------------------------------CCAGCTACAGCTAC--TGTT-AG------------GCGT---GTGCGTGGCGCTAATTGAAACGCT------------CAC--TA-TT--C----A-AG----C-------------TTGAGCTAG-CGCCCATCC-T-----------CC---------------------------------CCC-------TCGCATTGTGAGTC-----------------------------ACCTGCCACCA-AAAAAAAAAAAAAAAACCAAAATAA-AAATTGCGTGCCA--------CACACAT--AATTCTCGGCGGG-CTCAAAAAC--------------A--AAAACAAGAAC------AAC-AACAA
droMoj3	scaffold_6496:5706553-5706668 +		AAATGGAAACAG------------------------------------------CTC--------------------------------------------------------CCCCACTACATGACGTACCTCTGCCACAATAATAACAACAACAAATACAGCTATAGCTCCATTTACAGTTAC--TTTT-AG------------GCGT---GTGCGTGGCGCTAATTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15245:11116943-11117208 +		ACAACAA----CAGCGAGCAGCGCA----AGTCAAGAATGAAGTGGAAATACATCCCCCC---C---------------------------AATC-GTAA----TTCG-CC--C-----CACATGA------------------------------------------------------CGTAT--TTTT-AG------------GCGT---GTGCGTGGCGCTAATTGAAA--CT------------CTCACAA-AATTC----GAAG----CTTAC---------T----TCAG-CTCACTTCT-T-----------TC-------------------------------CCCTTTTGTGCGTCTCCTCGTGAGTCA-----------------------------CCTGCGCGCCCGC-----------AAGCCAAAT-AAGAGATTGCGTGCCACTTTGCTACACACAC--AATTCTCG-GCGGGC--AAAACTT-------------A--AATTT------------AATATCAAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAAACCACCCC--------------------------------------------------------C-----CGCA------------------------------------------------CCA--CCCATTTAC--TGTT-AAACATGTGTGCGCGTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTAT---------TTTTTTTGG-CG-------CT-----------CCACAAAAG---------------------CCACTTAC------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------TCAC--AACTCCCGCGAGGAC--GACAACT-------------A--CTGCT------------AACAACTAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................TTAC------------TTGTGAGTCAGCT--------TACGA..................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATGTGTGCGCGTGT---GTGCGTGGCG...............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................AAAG---------------------CCACTTAC------------TTGTGAGTCAGCT--------.......................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGAC--GACAACT-------------A--CTGCT------------AACAACTAA	30	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGCGCGTGT---GTGCGTG..................................................................................................................................................................................................................................................................................................................................	16	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AAAGCAAAACAAAGTGAATGACAAA----CAGCGAGAATGAAATGGAAAACCACCCC--------------------------------------------------------C-----CGCA------------------------------------------------CCA--CCCATTTAC--TGTT-AGACATGTGTGCGCGTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTAT---------TTTTTTTGG-CG-------CT-----------CCACAAAAG---------------------CC--TTAC------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------TCAC--AACTCCCGCGAGGAC--GACAACT-------------A--CTGCT------------AACAACCAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................................................................................................................................................................................................................................................T---------TTTTTTTGG-CG-------CT-----------CCACA.........................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAC--AACTCCCGCGAGGAC--GA...............................................	21	1	1.00	1	0	0	1	0

dm3

AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAACGAAATGGAAAACCACCCC--------------------------------------------------------C-----CGCA------------------------------------------------CCA--CCCACTTAC--TGTT-AGACATGTGTGCGCGTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTAT---------TTTTTTTGG-CG-------CT-----------CCACAAAAG---------------------CCACTTAC------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------TCAT--AACTCCCGCGAGGAC--GACAACT-------------A--CCGCT------------AACAACTAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................GCGAGAACGAAATGGAAAACCACCCC--------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AATGGAAAACCACCCC--------------------------------------------------------C-----CGCA------------------------------------------------CCA--CCCAC.........................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TGAATGACAAA----CGGCGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTTCC---------------------------AGATTGCGTG......................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCCGCGAGGAC--GACAACT-------------A--CCGCT------------AAC......	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGC-------------TCAT--AACTCCCGCGAGGAC--G................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TGTGTGCGCGTGT---GTGCGTGGCG...............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCGTGC-------------TCAT--AACTCC............................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AAAACCACCCC--------------------------------------------------------C-----CGCA------------------------------------------------CCA--CCC...........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GTGGCGCTAATTGAA---CT------------CACAC................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGC-------------TCAT--AACTCCCGCGAGGAC--GA...............................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................AGTCAGCT--------TACGACT-------TCCACCT..................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................ACAAAAG---------------------CCACTTAC------------TTGTGAGTC...................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GTGCGCGTGT---GTGCGTGGCG...............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--AACTCCCGCGAGGAC--GACAACT-------------A--CC........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGCCTTCC---------------------------AGATTGCGT.......................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droEre2

AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAAACCACCCC--------------------------------------------------------C-----CGCA------------------------------------------------CCA--CCCACTTAC--TGTT-AGAC----GTGCGCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTAT---------T-TTTTTGG-CG-------CT-----------CCACAATAG---------------------CCCCATAT------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACAA--AACTCCCGCGAGGAC--GACAACTA----CGACAACTA--CAGCT------------AACAACTAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............AGTGAATGACAAA----CGGCGAGAATGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTA----CGACAACTA--CAGCT------------AACAACC..	27	1	1.00	1	0	1	0	0	0	0	0

droYak3

AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAACCCAACCC--------------------------------------------------------C-----CGCA------------------------------------------------CCA--CCCGCTTAC--TGTT-AGAC----GTGCGCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTAT---------TTTTTTTGG-CG-------CT-----------CCACAAAAG---------------------CCACATAT------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACAC--AACTCCCGCGAGGAC--GGCAACTA----CGACAACTA--CAGCTAACAAC-----TAACAACTAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCC---------------------------AGATTGCGTGC-------------ACAC--AACT..............................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAAAGCACCCCCTT---GCCCAGTTA--------------------------------CCCG-CC--C-----CA-A------------------------------------------------CCC--ACCATTTAC--TATTTAGAA----TTGCGCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTAT---------T-TTTTTGG-CG-------CT-----------CCACAAAAG--------------------GCCATATAT------------TTGTGAGTCAACT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACAC--AACTCCCGCGAGGAC--GACAACTA--------------------------------AACAACTAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAAGCCACCCCCTGCCGC------C----------------------GC-CCA-----CTCGCC-----------CA------------------------------------------------CCC--CCCACTTAC--TGCT-AGAA----CTGCCCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATATATGTATAA----TTTAT---------T--TTTTGG-CG-------CT-----------CCACAA-AG---------------------CC-CGTAT------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACAC--CATTCCCGCGGGGAC--GCCAACTA---------------CGA--------------CACAACTAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAAACCACCCCCAGCTCC----------------------------------CC----CCCA-CCCCC-----CCTAC--T--------------------------------------------CCA--CCCACTTAC--TGTT-AGAA----TTGCCCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT--GTATAA----TTTAT---------TTTTTTTGGTCG-------CT-----------CCACCAGAG---------------------CCACATAT------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACAC--AATTCCCGCGAGGAC--GACAACAA------------A--CCG--------------ACTAACTAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAATCCACCCCCCT---A-----------------------------AC-CCAC----TTCA-CCCT-----------------------------------------------------------------CTTTTAC--TGTT-AGAA----GTGCCCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTATTTTAG--TTTTTTTTTCG-CG-------CT-----------CCACAAAAG---------------------CCACATAT------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACAC--AACTCCCGCGAGGAC--GACAAA--------------A--CAACC------------AGCAACTAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAATCCACCCCCCG---T------C----------------------AC-CCA------CCA-CCCT----------------------------------------------------------------CCTTTTAC--TGTT-AGAA----GTGCGCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTATTTAAGTTGTTTTTTTTGG-CG-------CT-----------CCACAA-AG---------------------CCACATAT------------TTGTGAGTCAGCT--------TACGACT-------TCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACAC--AACTCCCGCGAGGAC--AACAAATA-----------------ACC------------AGCAACTAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAAGCAAAACAAAGTGAATGACAAA----CGGCGAGAATGAAATGGAAATCCACCCCCCT---T------------------------------------------CGC----C-----CGTG------------------------------------------------CCC--CCCTTTTAC--TGTT-AGAA----GTGCGCCTGT---GTGCGTGGCGCTAATTGAA---CT------------CACACAA-TATAT----ATAA----TTTATA------TTTTTCTTTGG-CG-------CT-----------CCACAAAAG---------------------CCACATAT------------TTGTGAGTCACCT--------TACGACT-ACT---TCCACCTGAATTCC---------------------------AGATTGCGTGC-------------ACAC--AACTCCCGCGAGGAC--AACAACT---------------------------------AACAACTAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAGCAAAACAAAGTGAATGACAAAAAGTCGACGAGAATGAAATGGAAATCCACCCTCTC---CCC--------------------------CTTGCCACCCCATCCGCCCATC-----CGCGT------------------------------------------------------GTGTTAC--TGTT-AGAC----CTGCGCCTGTGT-GTGTGTGGCGCTAATTGAA---CAAGTGTATAAGTGTACACAAATATAT----AT-A----TTCAT---------TCTTTTTGG-CG-------CT-----------CCA--------------------------------TAT------------TTGTGAGTCAGCT--------TACGACTGACTTGCTCCACCTGCCTTCC---------------------------AGATTGCGTGC-------------ACACAATATTCCCGCGAGGAC--GACTAG--------------AGGCAGCCGAGCATAATAATAATAGCAGA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AAAGCAAAACAAAGTGAATGACAAA----AGTGGAGAATGAAATGGAAATCCAACCAACC---A------------------------CCCACTT-CCAC----CCCA-CCACC-----CCCACGG---A------------------------------------------------CTCTCTC--TATT----T----GTGCGCCTGTGT-GTGTGTGGCGCTAATTGAAGAGCC------------CACAAAG-TT--C----TCTA----CTTACT------TTTTTTTTTGG-CG-------CT-----------TTTCATAATATAGTTGGAATATATATATGTTTCTGTGT------------TTGTGAGTCAGCC--------TACAACT-------TCCACCTGCTTTCC---------------------------AGATTGCGTGC-------------ACACCCAATTCCCGCGAGGAC--AACAGTAAAAAAAAAAAAAAA--CAGCC------------AAATAATAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGC-------------ACACCCAATTCCCGCGAGGAC--.................................................	25	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA--CAGCC------------AAA......	19	2	0.50	1	0	0	1	0	0	0

droBip1

AAAGCAAAACAAAGTGAATGACAAA----AGTGGAGAATGAAATGGAAATCCACCCAACC---A------------------------CCCCCT----------CTTA-CTCTC-----TTCCT----------------------------------------------------------AAC--GGAC-ATAA----GTGCGCCTGT---GTGCGTGGCGCTAATTGAAGAGCC------------CACAAAG-TT--C----TCTATATATCTTT---------TTTTTTTGG-CG-------CT-----------TCATATAATATAAATGGAATATATGTATG-T-TTGTGT------------TTGTGAGTCAGCC--------TACAACT-------TCCACCTGCTTTCC---------------------------AGATTGCGTGC-------------ACACACGATTCCCGCGAGGAC--AACAAA--------------A--CAGCCAAAAAT------AAT-AATAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

-------------GTGAATGACGAA----AGTCAAGAATGAAAGGGAAATATGCCTCCTC---C--CAGGAACTGGCAAAGGCAAACACACACAC-ACAG----TCCA-CCCCC-----CGCATGACGTA----------------------------------------------TATATGTAT--TGTT-GGAT----GTGGGTCTGT---CTGCGCGGCGCTAATTGAATAGCT------------CACACAA-T----------------------------------TTTGG-CGCA-----CT-----------CC-------------------------------CCCCC------------TCGCTAGTCCGCTTAGAGCCTTACAACT-------TCCACCTGCCTTAT---------------------------AGATTGCGTGC-------------GCAC--GACTCCCCCGAGGAC--AACAAA--------------A--CCAGC------------CAAAAATAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGC-------------GCAC--GACTCCCCCGAGGA....................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................TA----------------------------------------------TATATGTAT--TGTT-GGAT----GT....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-------------GCAC--GACTCCCCCGAG......................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGC-------------GCAC--GACTCCCCCGA.......................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGC-------------GCAC--GACTCCCCCGAGG.....................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGC-------------GCAC--GACTCCCCCGAGGAA--.................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

-------------GTGAATGACGAA----AGTCAAGAATGAAAGGGAAATATGCCTCCCC---CCCCAGGCACAGGCAAAGGCAAACAC--ACAC-ACAG----TCCA-CCCCC-----CGCATGACATA----------------------------------------------TATATGTAT--TGTT-GGAT----GTGGGTCTGT---CTGCGCGGCGCTAATTGAATAGCT------------CACACAA-T----------------------------------TTTGG-CGCA-----CT-----------CCC--------------------------------CCC------------TCGCTAGTCCGCTTAGAGCCTTACAACT-------TCCACCTGCCTTAT---------------------------AGATTGCGTGC-------------GCAC--GACTCCCCCGAGGAC--AACAAA--------------A--CCATC------------AAAAAATAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................TGTT-GGAT----GTGGGTCTGT---CT.......................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGC-------------GCAC--GACTCCCCCGAGGAC--AACAA............................................	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................GTT-GGAT----GTGGGTCTGT---CTGCT....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGTGC-------------GCAC--GACTCCCCCG........................................................	23	1	1.00	1	0	1	0	0	0	0

droWil2

AGAGTGTGACAGAGTGAGCGTTATA----GGGGAA------------------------------------------------------------------------------------------------CGGGAATGTAATAAAAACAATAACAAAGAATGA----A--CTG--G--ACTTTTTGTTTT-TG------------GTGTTTGCTGCGTGGCGCTAATTGAAACGCT------------CACACAA-TTTAT-----TAG----TTCAC---------TCTCTACTT-CA-------CTTTACTATTGCTTTCCGC--------GTGCGTATGTGTGAGTGTTTGTGT------------ATGTGAGTCACCT--------CTTACTC-------TGCACCTGCTTAGT------------------------AA-GGATTGCGTGCTA--------A--GCGA--AATTCCTGCGAGACC--CCCACC---------------------C------------CCCAACTAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................................................................AATAACAAAGAATGA----A--CTG--G--ACTTTTTT...................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGCTTAGT------------------------AA-GGATTGCG........................................................................................	22	1	2.00	2	0	0	2	0	0
.GAGTGTGACAGAGTGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................GTCACCT--------CTTACTC-------TGCACC...................................................................................................................................	20	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CACCT--------CTTACTC-------TGCACCT..................................................................................................................................	19	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................AAAGAATGA----A--CTG--G--ACTTTT.....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................AAAGAATGA----A--CTG--G--ACTTTTT....................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................CTGCGTGGCGCTAATTGAAAC....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................TTT-TG------------GTGTTTGCTGCGTGGC................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
................................................................................................................................................................ATGA----A--CTG--G--ACTTTTTGT..................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................AATAACAAAGAATGA----A--CTG--G--A..........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................TG------------GTGTTTGCTGCGTGGCGCT.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AGT------------------------AA-GGATTGCGTGCTA--------A--GCGA--AAT...............................................................	26	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCCTGCGAGACC--CCCACC---------------------C------------CCCAACT..	29	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................CA-------CTTTACTATTGCTTTCCGC--------................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................TT-TG------------GTGTTTGCTGCGTGGCGCT.............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................CTACTT-CA-------CTTTACTATTGCTTTCCGC--------................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
......................ATA----GGGGAA------------------------------------------------------------------------------------------------CGGGAATGTAAT...............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................GAATGA----A--CTG--G--ACTTTTTGTTTT-..............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GT------------------------AA-GGATTGCGTGCTA--------A--GCGA--A.................................................................	23	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGT------------------------AA-GGATTGCGTG......................................................................................	18	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................TGCTTTCCGC--------GTGCGTATGTGTGA..................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------AA-GGATTGCGTGCTA--------A--GCG.....................................................................	20	1	1.00	1	0	0	1	0	0
...................GTTATA----GGGGAA------------------------------------------------------------------------------------------------CGGGAATGTAATAAA............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAGT------------------------AA-GGATTGCGTGCTA--------A--G.......................................................................	24	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................TTTT-TG------------GTGTTTGCTGCGTGG.................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................TGTTTT-TG------------GTGTTTGCTGCGTGGC................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
...........................................................................................................................................................................................................................................................CACAA-TTTAT-----TAG----TTCAC---------T.............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................ATTGCTTTCCGC--------GTGCGTATG.......................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GT------------------------AA-GGATTGCGTGCTA--------A--G.......................................................................	19	1	1.00	1	0	0	1	0	0
.......GACAGAGTGAGCGTTATA----GGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGTGCTA--------A--GCGA--AATTCCTGCGA.......................................................	26	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................CTTTTTGTTTT-TG------------GTGTTTGCTGCGT...................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................TG------------GTGTTTGCTGCGTGGCG...............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................GTGTGAGTGTTTGTGT------------ATG.........................................................................................................................................................................	19	3	0.33	1	0	0	0	1	0

droVir3

TA-----------ATAAATAGCGCA----AGTCAAGAATGAAATGGAAATACAGCCCCCC---G----------------------------CTT-GCAC----TCCG-CC--C-----CACATGACGTA-----------------------------------------CCAGCTACAGCTAC--TGTT-AG------------GCGT---GTGCGTGGCGCTAATTGAAACGCT------------CAC--TA-TT--C----A-AG----C-------------TTGAGCTAG-CGCCCATCC-T-----------CC---------------------------------CCC-------TCGCATTGTGAGTC-----------------------------ACCTGCCACCA-AAAAAAAAAAAAAAAACCAAAATAA-AAATTGCGTGCCA--------CACACAT--AATTCTCGGCGGG-CTCAAAAAC--------------A--AAAACAAGAAC------AAC-AACAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--AATTCTCGGCGGG-CTCA................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GCTAC--TGTT-AG------------GCGT---GTGCGTGGC................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................GTGCGTGGCGCTAATTGAA......................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AGCTAC--TGTT-AG------------GCGT---GTGCGTGGCGCT.............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................C--TA-TT--C----A-AG----C-------------TTGAGCTAG-CGCC................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..............................................AAATACAGCCCCCC---G----------------------------CTT-GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CAAGAATGAAATGGAAATACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................AG----C-------------TTGAGCTAG-CGCCCATCC-T-----------CC---------------------------------C..........................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.A-----------ATAAATAGCGCA----AGTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAATGGAAACAG------------------------------------------CTC--------------------------------------------------------CCCCACTACATGACGTACCTCTGCCACAATAATAACAACAACAAATACAGCTATAGCTCCATTTACAGTTAC--TTTT-AG------------GCGT---GTGCGTGGCGCTAATTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................TTTT-AG------------GCGT---GTGCGTGGCGCT.............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droGri2

ACAACAA----CAGCGAGCAGCGCA----AGTCAAGAATGAAGTGGAAATACATCCCCCC---C---------------------------AATC-GTAA----TTCG-CC--C-----CACATGA------------------------------------------------------CGTAT--TTTT-AG------------GCGT---GTGCGTGGCGCTAATTGAAA--CT------------CTCACAA-AATTC----GAAG----CTTAC---------T----TCAG-CTCACTTCT-T-----------TC-------------------------------CCCTTTTGTGCGTCTCCTCGTGAGTCA-----------------------------CCTGCGCGCCCGC-----------AAGCCAAAT-AAGAGATTGCGTGCCACTTTGCTACACACAC--AATTCTCG-GCGGGC--AAAACTT-------------A--AATTT------------AATATCAAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................................................................................................................................................................................TTT-AG------------GCGT---GTGCGTGGCGC..............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTTTGCTACACACAC--..................................................................	18	1	1.00	1	1	0

dsi_6858

2r:12083675-12083824 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-23.6	-23.2	-23.1