ID:

dsi_6855

 Coordinate:

3r:4170789-4170938 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-1.5 -1.3 -1.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

GTCCTCCTTCGATACATTAAATTGACTTTGGTTCTTCGCTGGATTTTATGCATACGAAAAATACTTAAACTAACAATAACCCCTTTGTTAAAATAATATATTATATTATTATTCAAAAGATTCCCAACAAACACATAAGGAAATTTAAAAAAATCCTTAAATGCACCGCTTATTGGCCAAGACAAATCAACACTACGGACATTTTCTGGCGAACTGCAAGTGCCCTCCTTTCCATCCTATTCCACCAAAT
**********************************************************************************************************************************************************...........(((....((((..........)))).....)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
..................................................................................................................................................................................................ACGGACATTTTCTGGCGAACT................................... 21 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................ACTACGGACATTTTCTGGCG....................................... 20 0 1 5.00 5 3 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TACGGACATTTTCTGGCGAACT................................... 22 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CACTACGGACATTTTCTGGCG....................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TGGCCAAGACAAATCAACACTACGGACATT............................................... 30 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CTTTCCATCCTATTCCACCAAAT 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTCTGGCGAACTGCAAGTGCCCT........................ 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.................................CTTCGCTGGATTTTATGC....................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GACAAATCAACACTACGGAC.................................................. 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CAACACTACGGACATTTTCT........................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ATCAACACTACGGACATTTTCTGGC........................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CCTTAAATGCACCGCTTATTG........................................................................... 21 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTCTGGCGAACTGCAAGTGCCCTCCT..................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................AATCAACACTACGGACAT................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ATTTTCTGGCGAACTGCAAGTGCCCTCCT..................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TTTAAGAAAATCCTTAAATGCACCA.................................................................................. 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CTGGCGAACTGCAAGTGCC.......................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............TACATTAAATTGACTTTGGTT......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CATTTTCTGGCGAACTGCAAGTGCC.......................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................ACTTTGGTTCTTCGCT.................................................................................................................................................................................................................. 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACACTACGGACATTTTCTGGCGAACTGCA................................ 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................AACACTACGGACATTTTCTGGCGG...................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GACAAATCAACACTACGGACATTTT............................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................AATTGACTTTGGTTCTTCGCTG................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GCCAAGACAAATCAACACTACGGA................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTCTGGCGAACTGCAAGTGCC.......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........ATACATTAAATTGACTTTGGGTCTT...................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......CTTCGATACATAAAATAGACTTCGGT.......................................................................................................................................................................................................................... 26 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............ATTAAATTGACTTTGGTTCTTCGCT.................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............CATTAAATTGACTTTGGTTCTT...................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CTACGGACATTTTCTGGC........................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CTAACAATAACCCCTTTGT.................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............TATTAAATAGACTTTGGTTCTTCGCTGGA............................................................................................................................................................................................................... 29 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................CACTACGGACATTTTCTGGCGAACTGCA................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............TACATTAAATAGACTTTGGT.......................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AAGACAAATCAACACTACGGACATT............................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................ATCAACACTACGGACATTTTCT........................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................AGACAAATCAACACTACGGACAC................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CAACACTACGGACATTTTCTGGC........................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ATCAACACTACGGACATTTTCTG.......................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AACACTACGGACATTTTCTGGCGAACTGC................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACGGACATTTTCTGGCGAACTGCA................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................TGGTTCTTCGCTGGATTTTATGCA...................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................ATTTTCTGGCGAACTGCAAGTGCCCT........................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CGAACTGCAAGTGCCCTCCT..................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................TGGATTTTATGCATACGAAAAGTACT......................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACACTACGGACATTTTCTGGCGA...................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................AACACTACGGACATTTTCTGGCGAAC.................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................TTTCTGGCGAACTGCAAGTGC........................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AGACAAATCAACACTACGGACAT................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................ACAAATCAACACTACGGAC.................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CAAGACAAATCAACACTACGGAC.................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................TTGGTTCTTCGCTGGATT............................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............ACATTAAATTGACTTTGGTTCTTCGCT.................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................TTGGTTCTTCGCTGGATTTTATGCA...................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................AACACTACGGACATTTTCTGGCGA...................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACACTACGGACATTTTCTGGC........................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GCGAACTGCAAGTGCCCTCCT..................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................ACATTTTCTGGCGAACTG.................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
................TTAAATTGACTTTGGTTCTTCGCTGGA............................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTTTCTGGCGAACTGCAAGTGCCCT........................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACGGACATTTTCTGGCCAACT................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........TCGATACATAAAATAGACTTCGGTTC........................................................................................................................................................................................................................ 26 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................CAAGACAAATCAACACTACGGACATTTT............................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TACGGACATTTTCTGGCGAACTGCAAG.............................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACACTACGGACATTTTCTGGCGAACT................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACGGACATTTTCTGGCGAACTGC................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GACATTTTCTGGCGAACTGC................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TAAGAAAATCCTTAAATGCACCAC................................................................................. 24 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
....................ATTGATTTTGGTTCGTCGCT.................................................................................................................................................................................................................. 20 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
...CTCCTTCGATACATTAAATTGAC................................................................................................................................................................................................................................ 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TCAAAAGATTCCCAACAAACACATAAGGA............................................................................................................. 29 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
................TTAAATTGACTGTGGGCCTT...................................................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................TGAGGAAATTTAAAAA................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CAGGAGGAAGCTATGTAATTTAACTGAAACCAAGAAGCGACCTAAAATACGTATGCTTTTTATGAATTTGATTGTTATTGGGGAAACAATTTTATTATATAATATAATAATAAGTTTTCTAAGGGTTGTTTGTGTATTCCTTTAAATTTTTTTAGGAATTTACGTGGCGAATAACCGGTTCTGTTTAGTTGTGATGCCTGTAAAAGACCGCTTGACGTTCACGGGAGGAAAGGTAGGATAAGGTGGTTTA
**************************************************...........(((....((((..........)))).....)))..********************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
..................................................................................................................TTTTCTAAGGGTTGTTTG...................................................................................................................... 18 0 2 1.00 2 2 0 0 0 0
CAGGAGGAAGCTATGTAATTTA.................................................................................................................................................................................................................................... 22 0 2 0.50 1 0 1 0 0 0
..........................................................................................................................................................................................................................TCACGGGAGGATGGGTA............... 17 2 9 0.11 1 0 0 1 0 0
...............................................................................................................................................................................................................CCGCTTGACGTTCTC............................ 15 1 20 0.05 1 0 0 0 0 1
.............................................................................TTGGTCAGACAATTTTATTA......................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0

Generated: 04/23/2015 at 09:49 PM