dsi_685

exon [2r_8779601_8780401_+]; CDS [2r_8779601_8780401_+]; CDS [2r_8779071_8779535_+]; exon [2r_8779038_8779535_+]; intron [2r_8779536_8779600_+]

##################################################-----------------------------------------------------------------################################################## CCGTTTTCACCAGCGGCAAGGTCAAGCAGATGTATACCCTGATGCAGGAGGTAAGGATGTGTGTTGGAACTTATTTATTCTTCTAGAGGATTAAACATACATATATGCTGTGCAGATTGGAAACGATCTGGAGCTGGCACTGCAGAGGCATGGCGAGAAGAACTC ************************************************(((((.((((((((((.......((((.((((....)))).)))))).)))))))).)).)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M053 female body	M025 embryo	M023 head	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs
.......CACCAGCGGCAAGGTCAAGC..........................................................................................................................................	20	0	1	2.00	2	0	1	0	0	0	0	0	0	1	0
..................................................GTAAGGATGTGTTTTGGAACT..............................................................................................	21	1	1	2.00	2	0	0	2	0	0	0	0	0	0	0
..................................................................................................................GATTGGAAACGATCTGGA.................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................CAAGCAGATGTATACCCTGATGCAGGAGAT.................................................................................................................	30	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................GATTGGAAACGATCTGGAGCT..............................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................AAGCAGATGTATACCCTGATGC........................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................GTCAAGCAGATGTATACCCTGATGCA.......................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................TGTATACCCTGATGCAGG.....................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................GAAACGGTCTGAAGCTGGCAGT........................	22	3	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................CTGGCACTGCAGAGGCATGGCGAGAA......	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..............GGCAAGGTCAAGCAGATG.....................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....TTCACCAGCGGCAAGGTCAAGC..........................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................CTGCAGAGGCATGGCGAGAAGAACTC	26	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0
....................GTCAAGCAGATGTATACCC..............................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................AACGATCTGGAGCTGGCACT........................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................AACGATCTGGAGCTGGCACTGCAGA...................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTGGAGCTGGCACTGCAGAG..................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............GCAAGGTCAAGCAGATGTATACC...............................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................AAGCAGATGTATACCCTGATGCAGGA....................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................TCTGGAGCTGGCACTGCA.....................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................GATTGGAAACGATCTGGAGCTGGCACT........................	27	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................GGAGATTGGAAACGATCTGGAGCT..............................	24	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................GGAAACGATCTGGAGCTGGCACTG.......................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTGGAGCTGGCACTGCAGAGGCATG.............	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
........................................................................................................................AAACGATCTGGAGCTGGCACTGCAGA...................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................TACATATATGCTGTGCAG..................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................ATTGGAAACGATCTGGAGCTGGCACT........................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................AAACGATCTGGAGCTGGCACT........................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................ACGATCTGTAGCTGG............................	15	1	9	0.78	7	0	0	0	0	0	0	5	0	0	2
.................................ATACCCTGATGCAGGAGATTGG..............................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................AAGGATCTGTGTTGGA.................................................................................................	16	1	3	0.33	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................AACGATCTGTAGCTGG............................	16	1	3	0.33	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................AACGATCTGTAGCTGGT...........................	17	2	18	0.11	2	0	0	0	0	0	0	2	0	0	0
.....................................................................................................................TGGAAACGATGTGGAGT...............................	17	2	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.............................................AGCAGGTAAGGATGTC........................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1	0	0	0	0

GGCAAAAGTGGTCGCCGTTCCAGTTCGTCTACATATGGGACTACGTCCTCCATTCCTACACACAACCTTGAATAAATAAGAAGATCTCCTAATTTGTATGTATATACGACACGTCTAACCTTTGCTAGACCTCGACCGTGACGTCTCCGTACCGCTCTTCTTGAG ************************************************(((((.((((((((((.......((((.((((....)))).)))))).)))))))).)).)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body
.............GCCCTTCCAGTTAGTCTACC....................................................................................................................................	20	3	15	0.07	1	1

Species	Coordinate	ID	Alignment
droSim2	2r:8779486-8779650 +	dsi_685	CCGTTTTCACCAGCGGCAAGGTCAAGCAGATGTATACCCTGATGCAGGAGGTAAGGATGTGTGTTGGAACTT--------------------------ATT---T-ATTC---T--TCT-----------------------------AGAGGAT-----------TAAACATA----CATA--T-ATGCTGTGCAGATTGGAAACGATCTGGAGCTG-GCACTG------CAGAGGCATGGCGAGAAGA------ACTC
droSec2	scaffold_1:5618915-5619079 +		CCGTTTTCACCAGCGGCAAGGTCAAGCAGATGTATACCCTGATGCAGGAGGTAAGGATTTGTCTTGGAACTT--------------------------CTT---T-ATTC---C--TAT-----------------------------AGAGGAT-----------TAAACATA----CATA--T-ATGCTGTGCAGATTGGAAACGATCTGGAGCTG-GCACTG------CAGAGGCAAGGCGAGAATA------ACTC
dm3	chr2R:8074358-8074522 +		CCGTTTTCACCAGCGGCAAGGTCAAGCAGATGTACACCCTTATGCAGGAGGTAAGGATTTGTGTTGAAACTT--------------------------ATT---T-ATCC---T--TAT-----------------------------GAGGGAT-----------TTAACATA----CATA--T-ATGCTGTGCAGATTGGAAAGGATCTGGAGCTG-GCACTG------CAGAGGCGTGGAGAGAAGA------ACTC
droEre2	scaffold_4845:17721023-17721181 -		CCGTATTCACCAGCGGAAAGGTTAAGCAGATGTACACCTTGATGCAAGAGGTAAGGATTTGTCCT--AAC---------------C-----------CTTT---A-ATAT---C--AAT-----------------------------AGAAGAC-----------TTA--------AATTA--T-TTGCTTTACAGATTGGAAACGATCTGGAGCTG-GCACTG------AAGAGACATAGCGAAAAGA------GCTC
droYak3	2R:8875673-8875833 -		CCGTTTTCACCAGCGGAAAGGTTAAGCAGATGTACACCTTGATGCAAGAGGTAAGGATTCCTCAT-AATC-C-----------------------AT-TTT---A-T-TCC--T--AAT-----------------------------AGAATAA-----------TTA--------ACGTT--T-TTGCTTTGCAGATTGGAAATGATTTGGAGTTG-GCACTG------AAAAGACATGGAGAGAAGA------GCTC
droEug1	scf7180000409462:2049374-2049540 -		CCGTTTTTACTAGTGGAAAGGTTAAGCAGATGTATACTCTGATGCAAGAGGTAAGAATATTAT---AAAC-------------------------AT-TTT---A-A-ATT--T--AAAGAA-----------------------ATA---TGTAT-----------ACATATGT--ACATA--T-TTTCTATTCAGATTGGCAACGATCTGGAGGCA-GCTCTC------GAAAGACATGGGGAGAACA------GCTC
droBia1	scf7180000301754:1855013-1855166 +		CAGTTTTCACCAGTGGAAAGGTTAAGCAGATGTATACCCTGATGCAAGAGGTAATAAA-TGACC--CAAC---------------T-----------TTCT---A-ATTT---G-------------------------------AAA------T-A------AAA------TA----ATAT--T-TTGCCACACAGATTGGCAAAGATCTGGAAGAC-GCCCTG------AAGAGACATGGAGAGAAGT------GCTC
droTak1	scf7180000415091:126110-126269 +		CAGTTTTTACGAGCGGAAAGGTTAAGCAGATGTATACCCTCATGCAGGAGGTAATTATATGGG----------------------TTTTTATAAGT-TCCT---A-ATTA---G-------------------------------AAA----TAC-----------TTA--------ACTTA--T-TTCCTATACAGATTGGCAGTGATTTGGAGGCG-GCTCTG------AAGAGACATGGGGAGAAAA------ACTC
droEle1	scf7180000490999:108567-108728 +		CAGCCTTTACCACGGGCAAGACCAAGCAAATGTATCCTCTGATGGTGCAGGTAAGTACAAGAA---TAAT--------TGTGGA-TTTT---------TGT-------------------------------------AGTTCCCAAA------C-T------AAA------TA----TTTT--T-TCCTTTTGTAGATTGGAAAGAACCTGGAGGCCAGCGCCG------A--ACGCTTGGGCAGTGGA------TCGT
droRho1	scf7180000777695:31703-31862 -		CTGTTTTTACCAGCGGAAAGGTCAAGCAGATGTATACCTTGATGCAAGAGGTAATAAAATTAA---CAAA-------------------------AT-GCT---TAG-ATA--A---AAAAG-----------------------GTA---TT--------------AA---TAC---TTTT--T-GTTTCGTGCAGATTGGCAACGACTTGGAGAAC-GCTCTA------AAGAGGCATGGCGAGAAGA------GCTC
droFic1	scf7180000453778:467669-467828 -		CTGTTTTTACCAGTGGAAAAGTCAAGCAGTTGTATACCCTAATGCAGGAGGTAATGTAAT-------------------------CCTACGAAATAT-CTC---A-A-TTG--T-------------------------------AAA--TGGTAT-----------AA---TA---GTTTA----TTTTCTCACAGATTGGCACCGACTTGGAAGGA-GCTCTG------AAAAGACATGGAGAGAAGA------GTTC
droKik1	scf7180000302411:838357-838510 +		CTGTCTTTACCAGCGGCAAGGTCAAGCAGATGTACAGTCTGATGCAAGAGGTAATCTA-TAGT----------------------T-------------CTT--A-G-ATC--T---ACAAG-----------------------AAA------T-----------GTA---AGT---TTAT--GGTGCCCCTACAGATTGGCAAAGACCTGGAGATT-ACTCTT------CAGAAACACGGGGAGAAGA------GCTC
droAna3	scaffold_13266:5367985-5368145 +		CTGTTTTTACAAGCGGAAAGGTCAAACAGATGTATCCACTGATGCAAGAGGTACTATTTAGAG---TAACTTATTAGCTG-----------------------------------------------TTTCTTTATTTAGTT-------------------------------CC-T-ACTT--T-TACCTTCCAAGATTGGCAGAGACCTGGAGGCA-GCTCTG------AAAAGACACGGCGAGGAGA------GCTC
droBip1	scf7180000395751:1149940-1150105 +		CTGTTTTTACGAGCGGAAAGGTTAAGCAGATGTACCCACTGATGCAAGAGGTACATTAAC------------------TGGG---CCTT---------------T-TTCC---T--TCT---GGGCGTTTCTT------------TAA------T-T------AAT----T--CT-T-CCTT--T-ACTTCTCCAAGATTGGCAGAGACCTGGAGGCA-GCTTTA------AAAAGACACGGCGAGGAGA------GCTC
dp5	3:2944615-2944786 -		CGGTTTTCACCAGTGGAAAGGTTAAGCAAATGTATACCTTGATGCTGGAGGTAAATACCTCAT---GT------------------ATTT------------AA-AA-G-TAAGTT---------------------------TCAGTT-CGA--TTTCAGTT----------CG-T-CCTC--T-TTTCCATGCAGATAGCTCACGATCTAGAGGAA-CATCTG------AAGAAGCATGTCCAGAACAATAGCAATTC
droPer2	scaffold_73:70328-70484 -		CTGTTTTCACCACTGGCAAGATCAAGCAGATGTATCCATTGATGGTGAAGGTAAGCACAAGAA---GAATCT--------ATAGGT-------------C----T-A-T----C--GAT-----------------------------TCAGGAAT-----------AACAATATTT-CTTCTTT-GCCATCCGCAGATCGGCAAAAATCTAGAGGCG-AATGTT------GG----------CCGT--G------AACC
droWil2	scf2_1100000004513:5880359-5880509 +		CTGTCTTTACCAGTGGCAAGATCAAGCAAATGTATCCTCTGATGGTGGAGGTGAGTGTAACTA---GAAG--------TATTTGG-TC----------------C-A-C-T---------------------------CTTTTCTAATCCTACGA-----------TTC--------AA-------TGATTTTGCAGATTGCCAAAGATTTGGAAACC-AATCTG------TCCAAAC------------------GTTC
droVir3	scaffold_12875:4790251-4790398 +		CCGTGTTCACCAGCGGCAAGATCAAGCAAATGTATCCATTGATGTTGGAGGTGAGTGCCAGAG---GCTT-A-----------ATT-----------TTTTGC-G-ATCT-------G---------------------------AAA------T-T------CATTT----------AAAT--T-ATGAACCGCAGATCGGCAAGAATCTTGAAGCG-AATCTG-----------------GCAGAACT------ACCC
droMoj3	scaffold_6496:13429564-13429726 +		CGGTTTTCACCAGCGGAAAGATGAAGCAGATGTATCCACTCATGCAGGAGGTGGGTTCTTCAC---ACT-----------------ATCG--------T----T-AA-A-T---------------------------AGTTTCCAATTTAAAGC-----------TTA--------ATTGA--T-CCACCTTATAGATAGCCGCAGATCTAGAGTCT-ATGCTAG-----CCAAGGAGAGGCCA-GCAA------ACGG
droGri2	scaffold_15112:1665783-1665946 -		CGGTTTTCACCAGCGGAAAGCTGAAGCAAATGTATCCTTTGATGCAGGAGGTGTGTTC-TGAC----------------------TCTTT------------GG-AA-A-TAATTT---------------------------TGTATT-AAA--TCTCAAGC---CGC--------A--------AAAATTTCTAGATTGCTGACGATTTAGAAGCG-CATCTCGCCCAGCAGAAGACTGGTCAGGACG------C--C

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CCGTTTTCACCAGCGGCAAGGTCAAGCAGATGTATACCCTGATGCAGGAGGTAAGGATGTGTGTTGGAACTT--------------------------ATT---T-ATTC---T--TCT-----------------------------AGAGGAT-----------TAAACATA----CATA--T-ATGCTGTGCAGATTGGAAACGATCTGGAGCTG-GCACTG------CAGAGGCATGGCGAGAAGA------ACTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......CACCAGCGGCAAGGTCAAGC.........................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................GATTGGAAACGATCTGGA..............................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GATTGGAAACGATCTGGAGCT...........................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AAGCAGATGTATACCCTGATGC.......................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTCAAGCAGATGTATACCCTGATGCA......................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TGTATACCCTGATGCAGG....................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CTG-GCACTG------CAGAGGCATGGCGAGAA............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GGCAAGGTCAAGCAGATG....................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTCACCAGCGGCAAGGTCAAGC.........................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CTG------CAGAGGCATGGCGAGAAGA------ACTC	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................GTCAAGCAGATGTATACCC.............................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AACGATCTGGAGCTG-GCACT....................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AACGATCTGGAGCTG-GCACTG------CAGA.........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CTGGAGCTG-GCACTG------CAGAG........................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GCAAGGTCAAGCAGATGTATACC..............................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AAGCAGATGTATACCCTGATGCAGGA...................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TCTGGAGCTG-GCACTG------CA...........................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GATTGGAAACGATCTGGAGCTG-GCACT....................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................GGAAACGATCTGGAGCTG-GCACTG------.............................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CTGGAGCTG-GCACTG------CAGAGGCATG...................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AAACGATCTGGAGCTG-GCACTG------CAGA.........................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TA----CATA--T-ATGCTGTGCAG...............................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................ATTGGAAACGATCTGGAGCTG-GCACT....................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AAACGATCTGGAGCTG-GCACT....................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CCGTTTTCACCAGCGGCAAGGTCAAGCAGATGTATACCCTGATGCAGGAGGTAAGGATTTGTCTTGGAACTT--------------------------CTT---T-ATTC---C--TAT-----------------------------AGAGGAT-----------TAAACATA----CATA--T-ATGCTGTGCAGATTGGAAACGATCTGGAGCTG-GCACTG------CAGAGGCAAGGCGAGAATA------ACTC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..GTTTTCACCAGCGGCAAGGTCAAGC.........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................GAAACGATCTGGAGCTG-GCA......................................	20	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................TGGAGCTG-GCACTG------CAGAGGC......................	21	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................AAACGATCTGGAGCTG-GCACTG------CAGA.........................	26	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................CTGGAGCTG-GCACTG------CAGAGGC......................	22	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................TGGAGCTG-GCACTG------CAGAGG.......................	20	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................AAACGATCTGGAGCTG-GCACTG------.............................	22	1	1.00	1	0	1	0	0

dm3

CCGTTTTCACCAGCGGCAAGGTCAAGCAGATGTACACCCTTATGCAGGAGGTAAGGATTTGTGTTGAAACTT--------------------------ATT---T-ATCC---T--TAT-----------------------------GAGGGAT-----------TTAACATA----CATA--T-ATGCTGTGCAGATTGGAAAGGATCTGGAGCTG-GCACTG------CAGAGGCGTGGAGAGAAGA------ACTC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................AGAGGCGTGGAGAGAAGA------....	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CTGGAGCTG-GCACTG------CAGA.........................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CTGGAGCTG-GCACTG------CAGAGG.......................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................GATTGGAAAGGATCTGGAGCTG-GC.......................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AAAGGATCTGGAGCTG-GCAC.....................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.....................................................................................................................................................................................................ATTGGAAAGGATCTGGAGC............................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AGATTGGAAAGGATCTGGAGCTG-GC.......................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GCTG-GCACTG------CAGAGGCGTGGA.................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................ACTG------CAGAGGCGTGGAGAGAATC------....	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GGAAAGGATCTGGAGCTG-GCTG.....................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GAAAGGATCTGGAGCTG-GCACTG------CAG..........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................CAGATGTACACCCTTATGCA......................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GTTTTCACCAGCGGCAAGG...............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................GTAAGGATTTGTGTTGAAAC..............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................TCTGGAGCTG-GCACTG------CAATC........................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CCGTATTCACCAGCGGAAAGGTTAAGCAGATGTACACCTTGATGCAAGAGGTAAGGATTTGTCCT--AAC---------------C-----------CTTT---A-ATAT---C--AAT-----------------------------AGAAGAC-----------TTA--------AATTA--T-TTGCTTTACAGATTGGAAACGATCTGGAGCTG-GCACTG------AAGAGACATAGCGAAAAGA------GCTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................GTACACCTTGATGCAAGAG..................................................................................................................................................................................................................	19	1	10.00	10	1	0	0	0	8	1	0
...........................AGATGTACACCTTGATGCAAGAG..................................................................................................................................................................................................................	23	1	7.00	7	0	0	0	0	6	1	0
.........................................................................................................................................................................................................................G-GCACTG------AAGAGACATAGC.................	19	1	5.00	5	0	0	0	0	5	0	0
.....................................................................................................................................................................................................ATTGGAAACGATCTGGAGCT...........................................	20	1	4.00	4	0	0	0	0	3	1	0
..GTATTCACCAGCGGAAAGGT..............................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	4	0	0
.....................................................................................................................................................................................................ATTGGAAACGATCTGGAGCTG-GCA......................................	24	1	3.00	3	1	0	1	0	1	0	0
..GTATTCACCAGCGGAAAGG...............................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	3	0	0
....................................................................................................................................................................................................GATTGGAAACGATCTGGAGCTG-GC.......................................	24	1	3.00	3	0	0	0	0	3	0	0
....................................................................................................................................................................................................GATTGGAAACGATCTGGAGCT...........................................	21	1	3.00	3	0	0	0	0	2	1	0
.......................................................................................................................................................................................................................CTG-GCACTG------AAGAGACATAGC.................	21	1	2.00	2	0	0	0	0	2	0	0
.................................................................................................................................................................................................................CTGGAGCTG-GCACTG------AAGAGA.......................	21	1	2.00	2	0	0	0	0	1	1	0
....ATTCACCAGCGGAAAGGTTAAGC.........................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0	0
............................GATGTACACCTTGATGCAAGAG..................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	2	0	0
.....................TTAAGCAGATGTACACCTTGATGCAAGA...................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	2	0	0
.............................................................................................................................................................................................................................ACTG------AAGAGACATAGCGAAAAGA------....	23	1	2.00	2	0	0	0	0	2	0	0
.....................................................................................................................................................................................................ATTGGAAACGATCTGGAGCTG-GC.......................................	23	1	2.00	2	0	0	0	0	2	0	0
.........................................................................................................................................................................................................................G-GCACTG------AAGAGACATAGCGAAAAGA------GC..	28	1	2.00	2	0	0	0	0	2	0	0
..........................................................................................................................................................................................................AAACGATCTGGAGCTG-GC.......................................	18	1	2.00	2	0	0	0	0	2	0	0
........................................................................................................................................................................................................GGAAACGATCTGGAGCTG-GCACT....................................	23	1	2.00	2	0	0	0	0	2	0	0
........................AGCAGATGTACACCTTGATGCAAGAG..................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
............................GATGTACACCTTGATGCAAG....................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................GCTG-GCACTG------AAGAGACATAGC.................	22	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................G-GCACTG------AAGAGACATAGCGAAAAGA------....	26	1	1.00	1	0	0	0	0	1	0	0
....................GTTAAGCAGATGTACACCTTGATGC.......................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
............GCGGAAAGGTTAAGCAGAT.....................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................GAAACGATCTGGAGCTG-GCACTG------A............................	24	1	1.00	1	0	0	0	0	1	0	0
..................AGGTTAAGCAGATGTACACCTTGAT.........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................GAGCTG-GCACTG------AAGAGA.......................	18	1	1.00	1	0	0	0	0	1	0	0
....ATTCACCAGCGGAAAGGTTAAGCAGATG....................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................G------AAGAGACATAGCGAAAAGA------....	20	1	1.00	1	0	0	0	0	1	0	0
.............................ATGTACACCTTGATGCAAGAG..................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................G------AAGAGACATAGCGAAAAGA------GC..	22	1	1.00	1	0	0	0	0	1	0	0
....................GTTAAGCAGATGTACACCTTGATG........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
....ATTCACCAGCGGAAAGGTT.............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................AACGATCTGGAGCTG-GCACTG------AAGA.........................	25	1	1.00	1	0	0	0	0	0	1	0
.....................TTAAGCAGATGTACACCTT............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................CTGGAGCTG-GCACTG------AAGA.........................	19	2	1.00	2	0	0	0	0	2	0	0
................................................................................................................................................................................................................TCTGGAGCTG-GCACTG------AAGA.........................	20	1	1.00	1	1	0	0	0	0	0	0
.......CACCAGCGGAAAGGTTAAGCAGAT.....................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................CTGGAGCTG-GCACTG------AAGAGACATA...................	25	1	1.00	1	0	0	0	0	1	0	0
.......CACCAGCGGAAAGGTTAAGC.........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.......CACCAGCGGAAAGGTTAAGCA........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..GTATTCACCAGCGGAAAGGG..............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................CTGGAGCTG-GCACTG------AAGAGAC......................	22	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................CTGGAGCTG-GCACTG------AAGAGACATAGC.................	27	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................AGACATAGCGAAAAGA------GCT.	19	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................TGGAGCTG-GCACTG------AAGAGA.......................	20	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................ATTGGAAACGATCTGGAGCTG-.........................................	21	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................ATTGGAAACGATCTGGAGC............................................	19	1	1.00	1	0	0	0	0	1	0	0
......................TAAGCAGATGTACACCTTGAT.........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
..GTATTCACCAGCGGAAAGGTTAAGCA........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................ACTG------AAGAGACATAGCGAAAA............	21	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................GAAACGATCTGGAGCTG-GCACTG------AAGA.........................	27	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................ATCTGGAGCTG-GCACTG------AAG..........................	20	1	1.00	1	0	0	0	0	1	0	0
....ATTCACCAGCGGAAAGGTTAAGCA........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
....ATTCACCAGCGGAAAGGTTAA...........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
........................AGCAGATGTACACCTTGATGC.......................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
............................GATGTACACCTTGATGCAAGA...................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................G-GCACTG------AAGAGACATAGCGAAAAGA------GCT.	29	1	1.00	1	0	0	0	0	1	0	0
..GTATTCACCAGCGGAAAGGTTA............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................AAACGATCTGGAGCTG-GCACTG------AAG..........................	25	1	1.00	1	0	0	0	0	1	0	0
........................AGCAGATGTACACCTTGATGCAAGA...................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
....ATTCACCAGCGGAAAGGT..............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
......................TAAGCAGATGTACACCTTG...........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................AACGATCTGGAGCTG-GCACTG------AA...........................	23	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................GGAAACGATCTGGAGCTG-GC.......................................	20	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................CTGGAGCTG-GCACTG------AAG..........................	18	2	0.50	1	0	0	0	0	1	0	0

droYak3

CCGTTTTCACCAGCGGAAAGGTTAAGCAGATGTACACCTTGATGCAAGAGGTAAGGATTCCTCAT-AATC-C-----------------------AT-TTT---A-T-TCC--T--AAT-----------------------------AGAATAA-----------TTA--------ACGTT--T-TTGCTTTGCAGATTGGAAATGATTTGGAGTTG-GCACTG------AAAAGACATGGAGAGAAGA------GCTC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................................................................................................................................................................GCACTG------AAAAGACATGGAGA...............	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.CGTTTTCACCAGCGGAAAGGTTAAGC.........................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...........AGCGGAAAGGTTAAGCAGATGTACACCTT............................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................AGATTGGAAATGATTTGGAGTTG-GCACT....................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................AAGGTTAAGCAGATGTACAC...............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................GATTGGAAATGATTTGGAGTTG-GCACT....................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GTTTTCACCAGCGGAAAGGTTAAGCA........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................GATTGGAAATGATTTGGAGTTG-GC.......................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................GTTG-GCACTG------AAAAGACATGGAGAG..............	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................AATGATTTGGAGTTG-GCACT....................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.CGTTTTCACCAGCGGAAAGGTTAAGCAGA......................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................GAAATGATTTGGAGTTG-G........................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................GATTGGAAATGATTTGGAGTTG-.........................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................G------AAAAGACATGGAGAGAAGA------G...	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................GCACTG------AAAAGACATGGAGAGA.............	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................ATGATTTGGAGTTG-GCACT....................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CCGTTTTTACTAGTGGAAAGGTTAAGCAGATGTATACTCTGATGCAAGAGGTAAGAATATTAT---AAAC-------------------------AT-TTT---A-A-ATT--T--AAAGAA-----------------------ATA---TGTAT-----------ACATATGT--ACATA--T-TTTCTATTCAGATTGGCAACGATCTGGAGGCA-GCTCTC------GAAAGACATGGGGAGAACA------GCTC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAGTTTTCACCAGTGGAAAGGTTAAGCAGATGTATACCCTGATGCAAGAGGTAATAAA-TGACC--CAAC---------------T-----------TTCT---A-ATTT---G-------------------------------AAA------T-A------AAA------TA----ATAT--T-TTGCCACACAGATTGGCAAAGATCTGGAAGAC-GCCCTG------AAGAGACATGGAGAGAAGT------GCTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAGTTTTTACGAGCGGAAAGGTTAAGCAGATGTATACCCTCATGCAGGAGGTAATTATATGGG----------------------TTTTTATAAGT-TCCT---A-ATTA---G-------------------------------AAA----TAC-----------TTA--------ACTTA--T-TTCCTATACAGATTGGCAGTGATTTGGAGGCG-GCTCTG------AAGAGACATGGGGAGAAAA------ACTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAGCCTTTACCACGGGCAAGACCAAGCAAATGTATCCTCTGATGGTGCAGGTAAGTACAAGAA---TAAT--------TGTGGA-TTTT---------TGT-------------------------------------AGTTCCCAAA------C-T------AAA------TA----TTTT--T-TCCTTTTGTAGATTGGAAAGAACCTGGAGGCCAGCGCCG------A--ACGCTTGGGCAGTGGA------TCGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTGTTTTTACCAGCGGAAAGGTCAAGCAGATGTATACCTTGATGCAAGAGGTAATAAAATTAA---CAAA-------------------------AT-GCT---TAG-ATA--A---AAAAG-----------------------GTA---TT--------------AA---TAC---TTTT--T-GTTTCGTGCAGATTGGCAACGACTTGGAGAAC-GCTCTA------AAGAGGCATGGCGAGAAGA------GCTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTGTTTTTACCAGTGGAAAAGTCAAGCAGTTGTATACCCTAATGCAGGAGGTAATGTAAT-------------------------CCTACGAAATAT-CTC---A-A-TTG--T-------------------------------AAA--TGGTAT-----------AA---TA---GTTTA----TTTTCTCACAGATTGGCACCGACTTGGAAGGA-GCTCTG------AAAAGACATGGAGAGAAGA------GTTC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTGTCTTTACCAGCGGCAAGGTCAAGCAGATGTACAGTCTGATGCAAGAGGTAATCTA-TAGT----------------------T-------------CTT--A-G-ATC--T---ACAAG-----------------------AAA------T-----------GTA---AGT---TTAT--GGTGCCCCTACAGATTGGCAAAGACCTGGAGATT-ACTCTT------CAGAAACACGGGGAGAAGA------GCTC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CTGTTTTTACAAGCGGAAAGGTCAAACAGATGTATCCACTGATGCAAGAGGTACTATTTAGAG---TAACTTATTAGCTG-----------------------------------------------TTTCTTTATTTAGTT-------------------------------CC-T-ACTT--T-TACCTTCCAAGATTGGCAGAGACCTGGAGGCA-GCTCTG------AAAAGACACGGCGAGGAGA------GCTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................AGAGACCTGGAGGCA-GCT......................................	18	1	2.00	2	1	0	0	1	0	0
.......................AAACAGATGTATCCACTGATGCAAGAG..................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	1	1
...............................................................................................................................................................................................................................TG------AAAAGACACGGCGAGGAGA------....	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................GACCTGGAGGCA-GCTCTG------A............................	19	1	1.00	1	0	1	0	0	0	0
........................AACAGATGTATCCACTGATGCAAGAT..................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
........................AACAGATGTATCCACTGATGCAAGAG..................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................TGGAGGCA-GCTCTG------AAAAGACACGGC.................	26	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................TACCTTCCAAGATTGGCAG.......................................................	19	1	1.00	1	0	0	0	0	0	1
....TTTTACAAGCGGAAAGGTC.............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................GACCTGGAGGCA-GCTCTG------AAAAGAC......................	25	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................GACCTGGAGGCA-GCTCTG------AAAAGACAC....................	27	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................CAGAGACCTGGAGGCA-GC.......................................	18	1	1.00	1	1	0	0	0	0	0
..............GGAAAGGTCAAACAGATGT...................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................ATTGGCAGAGACCTGGAGGC...........................................	20	1	1.00	1	0	0	0	0	1	0
......................CAAACAGATGTATCCACTGATGCAAGAG..................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
....TTTTACAAGCGGAAAGGT..............................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................GGCAGAGACCTGGAGGCA-GCTC.....................................	22	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................G------AAAAGACACGGCGAGGAG...........	19	1	1.00	1	0	1	0	0	0	0
.TGTTTTTACAAGCGGAAAGGTCAAAC.........................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........................ACAGATGTATCCACTGATGCAAGAG..................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
.TGTTTTTACAAGCGGAAAG................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...............................GTATCCACTGATGCAAGAG..................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................GATTGGCAGAGACCTGGAGGC...........................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................GCAGAGACCTGGAGGCA-GC.......................................	19	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................GATTGGCAGAGACCTGGAGGCA-GCT......................................	25	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................CTG------AAAAGACACGGCGAGGA............	20	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................GAGACCTGGAGGCA-GCTCTG------AAA..........................	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................GACCTGGAGGCA-GCTCTG------AAAAG........................	23	1	1.00	1	0	1	0	0	0	0
...............................GTATCCACTGATGCAAGAGA.................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................AGACCTGGAGGCA-GCTCTG------AAAA.........................	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................GACCTGGAGGCA-GCTCTG------AAAAGA.......................	24	1	1.00	1	1	0	0	0	0	0
..GTTTTTACAAGCGGAAAGGTC.............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
......................CAAACAGATGTATCCACTGAT.........................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droBip1

CTGTTTTTACGAGCGGAAAGGTTAAGCAGATGTACCCACTGATGCAAGAGGTACATTAAC------------------TGGG---CCTT---------------T-TTCC---T--TCT---GGGCGTTTCTT------------TAA------T-T------AAT----T--CT-T-CCTT--T-ACTTCTCCAAGATTGGCAGAGACCTGGAGGCA-GCTTTA------AAAAGACACGGCGAGGAGA------GCTC	Size	Hit Count	Total Norm	Total
No Reads

dp5

CGGTTTTCACCAGTGGAAAGGTTAAGCAAATGTATACCTTGATGCTGGAGGTAAATACCTCAT---GT------------------ATTT------------AA-AA-G-TAAGTT---------------------------TCAGTT-CGA--TTTCAGTT----------CG-T-CCTC--T-TTTCCATGCAGATAGCTCACGATCTAGAGGAA-CATCTG------AAGAAGCATGTCCAGAACAATAGCAATTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................GTATACCTTGATGCTGGA...................................................................................................................................................................................................................	18	1	3.00	3	0	1	0	0	2	0	0	0	0	0
................................................................................................................................................................................................................................................GTCCAGAACAATAGCAATT.	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.GGTTTTCACCAGTGGAAAGG...............................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.............................ATGTATACCTTGATGCTGGA...................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................ATAGCTCACGATCTAGAGGAA-.........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................AGCATGTCCAGAACAATAGCA....	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................ATAGCTCACGATCTAGAGGAA-C........................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................GGTTAAGCAAATGTATACCTTGATGCT......................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................AAATGTATACCTTGATGCT......................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GATAGCTCACGATCTAGAGG............................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
CGGTTTTCACCAGTGGAAAGG...............................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TCACGATCTAGAGGAA-CATCTG------A............................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................TTAAGCAAATGTATACCTTGATGCTGGA...................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............GTGGAAAGGTTAAGCAAAT.....................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................TAAGCAAATGTATACCTTGATGCTGGAG..................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................ATCTG------AAGAAGCATGTCCAGA.............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................TTAAGCAAATGTATACCTTGA..........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................ATCTG------AAGAAGCATGTCCAGAACA..........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................GTATACCTTGATGCTGGAGGT................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GATCTAGAGGAA-CATCTG------AAGAAGCAT....................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GGTTTTCACCAGTGGAAAG................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GGAA-CATCTG------AAGAAGCAT....................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GCTCACGATCTAGAGGAA-CATCTG------AAGA.........................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................GTATACCTTGATGCTGGAG..................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CATCTG------AAGAAGCATGTCC................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CATCTG------AAGAAGCATGTCCAGA.............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GATAGCTCACGATCTAGAGGAA-C........................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................ATCTG------AAGAAGCATGTCCAGAAC...........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................AAGCAAATGTATACCTTGATGCT......................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................TCTAGAGGAA-CATCTG------AAGAAGCATG...................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................GAAGCATGTCCAGAACAATAGCAATT.	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................AGAGGAA-CATCTG------AAGAAGCAT....................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CTGTTTTCACCACTGGCAAGATCAAGCAGATGTATCCATTGATGGTGAAGGTAAGCACAAGAA---GAATCT--------ATAGGT-------------C----T-A-T----C--GAT-----------------------------TCAGGAAT-----------AACAATATTT-CTTCTTT-GCCATCCGCAGATCGGCAAAAATCTAGAGGCG-AATGTT------GG----------CCGT--G------AACC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................AGATCAAGCAGATGTATCC...............................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0

droWil2

CTGTCTTTACCAGTGGCAAGATCAAGCAAATGTATCCTCTGATGGTGGAGGTGAGTGTAACTA---GAAG--------TATTTGG-TC----------------C-A-C-T---------------------------CTTTTCTAATCCTACGA-----------TTC--------AA-------TGATTTTGCAGATTGCCAAAGATTTGGAAACC-AATCTG------TCCAAAC------------------GTTC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................TCAAGCAAATGTATCCTCT............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
........ACCAGTGGCAAGATCAAG..........................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.......................AAGCAAATGTATCCTCTGATGGT......................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................GATTGCCAAAGATTTGGA..............................................	18	1	1.00	1	0	0	0	1	0
....CTTTACCAGTGGCAAGATCAAGCA........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
......................CAAGCAAATGTATCCTCTGATGGTGGA...................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
......................CAAGCAAATGTATCCTCTGATGGT......................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0

droVir3

CCGTGTTCACCAGCGGCAAGATCAAGCAAATGTATCCATTGATGTTGGAGGTGAGTGCCAGAG---GCTT-A-----------ATT-----------TTTTGC-G-ATCT-------G---------------------------AAA------T-T------CATTT----------AAAT--T-ATGAACCGCAGATCGGCAAGAATCTTGAAGCG-AATCTG-----------------GCAGAACT------ACCC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........AGCGGCAAGATCAAGCAAATGTA..................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................TTGAAGCG-AATCTG-----------------GCAGAACT------ACC.	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................G-AATCTG-----------------GCAGAACT------ACC.	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ATCAAGCAAATGTATCCATTGATGTTGG....................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................CATTT----------AAAT--T-ATGAACCGCAGA..............................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGGTTTTCACCAGCGGAAAGATGAAGCAGATGTATCCACTCATGCAGGAGGTGGGTTCTTCAC---ACT-----------------ATCG--------T----T-AA-A-T---------------------------AGTTTCCAATTTAAAGC-----------TTA--------ATTGA--T-CCACCTTATAGATAGCCGCAGATCTAGAGTCT-ATGCTAG-----CCAAGGAGAGGCCA-GCAA------ACGG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................................................................CT-ATGCTAG-----CCAAGGAGAGGCC................	22	1	1.00	1	1	0	0	0	0	0
.......CACCAGCGGAAAGATGAAGCA........................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....TTCACCAGCGGAAAGATGAAGCAGATGT...................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
...............GAAAGATGAAGCAGATGTAT.................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................AGATAGCCGCAGATCTAGAGT............................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................TAGCCGCAGATCTAGAGTCT-ATGCT....................................	25	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................GCAGATCTAGAGTCT-ATGCTAG-----.............................	22	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................AG-----CCAAGGAGAGGCCA-GCAA------ACGG	24	1	1.00	1	1	0	0	0	0	0
....................................CACTCATGCAGGAGGTGGGTTCTT........................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droGri2

CGGTTTTCACCAGCGGAAAGCTGAAGCAAATGTATCCTTTGATGCAGGAGGTGTGTTC-TGAC----------------------TCTTT------------GG-AA-A-TAATTT---------------------------TGTATT-AAA--TCTCAAGC---CGC--------A--------AAAATTTCTAGATTGCTGACGATTTAGAAGCG-CATCTCGCCCAGCAGAAGACTGGTCAGGACG------C--C	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................................................................................................................................GAAGCG-CATCTCGCCCAGCA...........................	20	2	3.50	7	7	0
.........................................................................................................................................................................................................................................GAAGACTGGTCAGGACG------C--C	19	2	2.00	4	2	2
..........................................................................................................................................................................................................................................AAGACTGGTCAGGACG------C--C	18	2	1.00	2	2	0
.....................................................................................................................................................................................................................AAGCG-CATCTCGCCCAGCAGAAG.......................	23	2	0.50	1	1	0
........ACCAGCGGAAAGCTGAAGCAAATG....................................................................................................................................................................................................................................	24	2	0.50	1	0	1
.....................TGAAGCAAATGTATCCTTTGATG........................................................................................................................................................................................................................	23	2	0.50	1	1	0
.........................................................................................................................................................................................................CTGACGATTTAGAAGCG-CATCTCGCCC...............................	27	2	0.50	1	1	0
.......................................................................................................................................................................................................................................CAGAAGACTGGTCAGGACG------C--.	20	2	0.50	1	1	0
...............................................................................................................................................................................................................ATTTAGAAGCG-CATCTCGCC................................	20	2	0.50	1	0	1
..................AGCTGAAGCAAATGTATC................................................................................................................................................................................................................................	18	2	0.50	1	1	0
....................................................................................................................................................................................................................GAAGCG-CATCTCGCCCAGCAGAAGACT....................	27	2	0.50	1	0	1
.........................................................................................................................................................................................................................G-CATCTCGCCCAGCAGAAGACTGGTCAG..............	28	2	0.50	1	1	0
...........................................................................................................................................................................................................................CATCTCGCCCAGCAGAAGACTGGTCAG..............	27	2	0.50	1	1	0
......................................................................................................................................................................................................................AGCG-CATCTCGCCCAGCAG..........................	19	2	0.50	1	1	0
........ACCAGCGGAAAGCTGAAGCAAATGTA..................................................................................................................................................................................................................................	26	2	0.50	1	1	0
.......CACCAGCGGAAAGCTGAAGCA........................................................................................................................................................................................................................................	21	2	0.50	1	1	0

dsi_685

2r:8779536-8779600 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-11.0	-10.7	-10.5