ID:

dsi_6788

 Coordinate:

3l:11816411-11816560 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-23.2 -23.0 -23.0 -22.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCTGCAGGGACAGCAGGGCCAGCCCGCTCCGCCCACCAAGGAAGTCATCGGTAAGGCTGAAACTCGCATGTTAAACCCAATTCCCAACCAATTTCATTCATGTGCCGCGAACACATGGCGGCTGCTACCAAAATAGCAATGAAAAAAAGGAGGAAAAAAAGAACAAGAAACATGCCTCCCTGCGCTCGTCGCACTCCATCTGTGTGTGTGCGTGTGTGTGTTTTGAGTCTTAAAATATACGCGCGTCGGC
**************************************************...((..........((((((.........((((...((..(((((((..((((((((.........)))))..........)))..)))))))....)).))))..............))))))))************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M024
male body
...........................TCCGCCCACCAAGGAAGTCATCGCC...................................................................................................................................................................................................... 25 2 1 3.00 3 0 1 1 0 0 1 0 0
............................................................................................................................................................AAAAGAACAAGAAACATGCCT......................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0
..................................................GTAAGGCTGAAACTC......................................................................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0
............................CCGCCCACCAAGGAAGTC............................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................AAAAAAGAACAAGAAACATGC........................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
..................................................GCAAGGCTGAAACTC......................................................................................................................................................................................... 15 1 5 0.80 4 2 1 1 0 0 0 0 0
.................................................CGTAAGGCTGAAACTC......................................................................................................................................................................................... 16 1 2 0.50 1 0 1 0 0 0 0 0 0
..................................................................................................................ATGGCGGCTGTTACC......................................................................................................................... 15 1 6 0.50 3 0 2 1 0 0 0 0 0
...............................................................................................................................................AAAAAGGAGGAAAAAGAGA........................................................................................ 19 1 4 0.25 1 1 0 0 0 0 0 0 0
...................................................................................................................TGGCGGCTGTTACCAAGA..................................................................................................................... 18 2 4 0.25 1 0 0 0 1 0 0 0 0
..................................................CTAAGGGTGAAACTCGCCT..................................................................................................................................................................................... 19 3 17 0.18 3 0 0 0 0 0 0 0 3
....................................................AAGGCTGAAACTCGAAGG.................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 1
...................................................TAAGGCTGAAACTCA........................................................................................................................................................................................ 15 1 15 0.13 2 2 0 0 0 0 0 0 0
.................................................CGTAAGGCTGAAACTCA........................................................................................................................................................................................ 17 2 8 0.13 1 1 0 0 0 0 0 0 0
..................................................GTAAGTGTGAAACTCGCCT..................................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 1
..................................................................................................................................................................................CCTGCGCTCCTCGCACA....................................................... 17 2 20 0.10 2 2 0 0 0 0 0 0 0
................................................................................................................................................................................TTCCTGCGCTCTTCGCA......................................................... 17 2 20 0.10 2 2 0 0 0 0 0 0 0
....CAGGGACAGCAGGGCA...................................................................................................................................................................................................................................... 16 1 13 0.08 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................TGTGTGTGCGTGTGTGTGTT............................ 20 0 14 0.07 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................CCTGCGCTCTTCGCACA....................................................... 17 2 14 0.07 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTGTTTGGAGTCGTAAAAA.............. 20 3 17 0.06 1 0 0 0 0 0 1 0 0
...............................................................................................................CACACGGCGGCTGCT............................................................................................................................ 15 1 17 0.06 1 0 0 1 0 0 0 0 0
............................................................................................................................................................AAAAGAACAAGAAAGA.............................................................................. 16 1 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

CGACGTCCCTGTCGTCCCGGTCGGGCGAGGCGGGTGGTTCCTTCAGTAGCCATTCCGACTTTGAGCGTACAATTTGGGTTAAGGGTTGGTTAAAGTAAGTACACGGCGCTTGTGTACCGCCGACGATGGTTTTATCGTTACTTTTTTTCCTCCTTTTTTTCTTGTTCTTTGTACGGAGGGACGCGAGCAGCGTGAGGTAGACACACACACGCACACACACAAAACTCAGAATTTTATATGCGCGCAGCCG
*************************************************************************...((..........((((((.........((((...((..(((((((..((((((((.........)))))..........)))..)))))))....)).))))..............))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
.........................................................ACTTTGAGCGTACAATTTGGG............................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................................GGAGGGACTCGAGCGG............................................................ 16 2 20 0.65 13 9 0 0 4 0 0 0
..................................................................................................................................................................................GGACGCTAGCAGCCTGA....................................................... 17 2 7 0.57 4 3 0 0 0 0 1 0
..........................................................................GGGGTTCAGGGTTGGTTAA............................................................................................................................................................. 19 2 5 0.20 1 0 0 0 0 1 0 0
.................................................................................................................................................................................GGGACGCTAGCAGCCTG........................................................ 17 2 7 0.14 1 1 0 0 0 0 0 0
.....................CGGGCGACGCAGATGGTTCC................................................................................................................................................................................................................. 20 3 8 0.13 1 0 0 1 0 0 0 0
.....................CGGGCGACGCAGATGGTTC.................................................................................................................................................................................................................. 19 3 17 0.12 2 0 1 1 0 0 0 0
..........................GAGGCGGGTGGTTGC................................................................................................................................................................................................................. 15 1 20 0.10 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................................................CAGAAAACTAAGAATTTT............... 18 2 10 0.10 1 1 0 0 0 0 0 0
..........................................................................................................................ACGATGGTTGAATCGCTAC............................................................................................................. 19 3 18 0.06 1 0 0 1 0 0 0 0
................................................................................................................................................................................AGGGTCGCTAGCAGCCTGA....................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:38 AM